Protein–RNA interactions for Protein: P16989

YBX3, Y-box-binding protein 3, humanhuman

Known RBP eCLIP

Length 372 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
YBX3P16989 RBCK1-208ENST00000414880 765 ntTSL 318.91■□□□□ 0.622e-6■□□□□ 10.4
YBX3P16989 RBCK1-215ENST00000640614 2599 ntTSL 5 BASIC18.65■□□□□ 0.582e-6■□□□□ 10.4
YBX3P16989 RBCK1-203ENST00000382181 2208 ntTSL 1 (best) BASIC18.36■□□□□ 0.532e-6■□□□□ 10.4
YBX3P16989 RBCK1-202ENST00000356286 2774 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.412e-6■□□□□ 10.4
YBX3P16989 RBCK1-209ENST00000415942 2613 ntTSL 517.51■□□□□ 0.392e-6■□□□□ 10.4
YBX3P16989 RBCK1-201ENST00000353660 2511 ntTSL 1 (best) BASIC17.47■□□□□ 0.392e-6■□□□□ 10.4
YBX3P16989 RBCK1-204ENST00000382214 2752 ntTSL 1 (best)16.44■□□□□ 0.222e-6■□□□□ 10.4
YBX3P16989 RBCK1-207ENST00000411647 593 ntTSL 313.79□□□□□ -0.22e-6■□□□□ 10.4
YBX3P16989 STXBP2-216ENST00000599648 472 ntTSL 224.65■■□□□ 1.544e-8■□□□□ 10.4
YBX3P16989 FLNB-203ENST00000419752 2002 ntTSL 5 BASIC12.55□□□□□ -0.49e-10■□□□□ 10.4
YBX3P16989 FLNB-211ENST00000484981 932 ntTSL 512.1□□□□□ -0.479e-10■□□□□ 10.4
YBX3P16989 PRKCB-203ENST00000463752 599 ntTSL 57.83□□□□□ -1.164e-9■□□□□ 10.4
YBX3P16989 COA1-218ENST00000488813 1641 ntTSL 211.72□□□□□ -0.533e-7■□□□□ 10.4
YBX3P16989 ELF2-209ENST00000511184 1766 ntTSL 533.65■■■□□ 2.989e-6■□□□□ 10.4
YBX3P16989 ELF2-208ENST00000511006 1434 ntTSL 1 (best)31.92■■■□□ 2.79e-6■□□□□ 10.4
YBX3P16989 TMEM120A-214ENST00000493111 1456 ntAPPRIS P1 TSL 1 (best) BASIC31.35■■■□□ 2.619e-6■□□□□ 10.4
YBX3P16989 UBE2G1-203ENST00000571980 984 ntTSL 529.48■■■□□ 2.319e-6■□□□□ 10.4
YBX3P16989 RNASEK-209ENST00000575822 613 ntTSL 327.7■■■□□ 2.029e-6■□□□□ 10.4
YBX3P16989 CDC16-211ENST00000628084 2058 ntTSL 5 BASIC27.47■■□□□ 1.997e-12■□□□□ 10.4
YBX3P16989 UBE2G1-206ENST00000574633 863 ntTSL 227.21■■□□□ 1.959e-6■□□□□ 10.4
YBX3P16989 C1GALT1-203ENST00000419721 591 ntTSL 326.89■■□□□ 1.99e-6■□□□□ 10.4
YBX3P16989 ZNF542P-203ENST00000468396 980 ntTSL 326.06■■□□□ 1.769e-6■□□□□ 10.4
YBX3P16989 CDC16-204ENST00000360383 2211 ntAPPRIS P3 TSL 5 BASIC25.91■■□□□ 1.747e-12■□□□□ 10.4
YBX3P16989 TSC22D4-206ENST00000496728 837 ntTSL 325.74■■□□□ 1.719e-6■□□□□ 10.4
YBX3P16989 TXNL1-211ENST00000590954 1339 ntAPPRIS P1 TSL 2 BASIC25.68■■□□□ 1.79e-6■□□□□ 10.4
YBX3P16989 TMEM120A-202ENST00000431867 872 ntTSL 525.33■■□□□ 1.659e-6■□□□□ 10.4
YBX3P16989 PSMD2-213ENST00000476461 816 ntTSL 324.92■■□□□ 1.581e-10■□□□□ 10.4
YBX3P16989 CDC16-206ENST00000375310 2156 ntTSL 1 (best) BASIC24.88■■□□□ 1.577e-12■□□□□ 10.4
YBX3P16989 CDC16-203ENST00000356221 2203 ntAPPRIS P3 TSL 1 (best) BASIC24.8■■□□□ 1.567e-12■□□□□ 10.4
YBX3P16989 TMEM120A-208ENST00000480538 668 ntTSL 224.62■■□□□ 1.539e-6■□□□□ 10.4
YBX3P16989 TMEM120A-204ENST00000440632 1352 ntTSL 524.61■■□□□ 1.539e-6■□□□□ 10.4
YBX3P16989 UHRF1BP1L-202ENST00000356828 2023 ntAPPRIS ALT2 TSL 1 (best) BASIC24.52■■□□□ 1.529e-6■□□□□ 10.4
YBX3P16989 ANKRD37-203ENST00000507479 649 ntTSL 424.41■■□□□ 1.59e-6■□□□□ 10.4
YBX3P16989 ANKRD37-204ENST00000507753 605 ntTSL 323.99■■□□□ 1.439e-6■□□□□ 10.4
YBX3P16989 C1GALT1-206ENST00000467716 458 ntTSL 523.61■■□□□ 1.379e-6■□□□□ 10.4
YBX3P16989 MAP3K5-201ENST00000359015 5197 ntAPPRIS P1 TSL 1 (best) BASIC23.6■■□□□ 1.379e-6■□□□□ 10.4
YBX3P16989 TSC22D4-202ENST00000393991 1469 ntTSL 2 BASIC23.59■■□□□ 1.379e-6■□□□□ 10.4
YBX3P16989 DDX41-217ENST00000515562 1184 ntTSL 1 (best)23.5■■□□□ 1.359e-6■□□□□ 10.4
YBX3P16989 ANKRD37-201ENST00000335174 1141 ntAPPRIS P1 TSL 1 (best) BASIC22.98■■□□□ 1.279e-6■□□□□ 10.4
YBX3P16989 ORC5-208ENST00000626700 344 ntTSL 3 BASIC22.89■■□□□ 1.259e-6■□□□□ 10.4
YBX3P16989 PSMD2-219ENST00000492191 581 ntTSL 222.43■■□□□ 1.181e-10■□□□□ 10.4
YBX3P16989 ORC5-204ENST00000448563 567 ntTSL 322.23■■□□□ 1.159e-6■□□□□ 10.4
YBX3P16989 UBE2G1-204ENST00000572484 1514 ntTSL 5 BASIC22.21■■□□□ 1.159e-6■□□□□ 10.4
YBX3P16989 NSUN2-208ENST00000513888 1290 ntTSL 220.94■□□□□ 0.949e-6■□□□□ 10.4
YBX3P16989 DHX33-204ENST00000574023 2040 ntTSL 1 (best)20.9■□□□□ 0.949e-6■□□□□ 10.4
YBX3P16989 TMEM120A-203ENST00000439537 1161 ntTSL 1 (best) BASIC20.85■□□□□ 0.939e-6■□□□□ 10.4
YBX3P16989 TMEM120A-201ENST00000417509 1444 ntTSL 2 BASIC20.4■□□□□ 0.869e-6■□□□□ 10.4
YBX3P16989 TXNL1-208ENST00000589329 896 ntTSL 320.22■□□□□ 0.839e-6■□□□□ 10.4
YBX3P16989 DMAC2-201ENST00000221943 1692 ntAPPRIS P1 TSL 2 BASIC20.16■□□□□ 0.829e-6■□□□□ 10.4
YBX3P16989 TMEM208-208ENST00000564087 518 ntTSL 519.79■□□□□ 0.769e-6■□□□□ 10.4
YBX3P16989 FAT1-208ENST00000509647 1852 ntTSL 1 (best)19.79■□□□□ 0.769e-6■□□□□ 10.4
YBX3P16989 TSC22D4-205ENST00000493217 2060 ntTSL 1 (best)19.77■□□□□ 0.759e-6■□□□□ 10.4
YBX3P16989 DMAC2-202ENST00000301183 1134 ntTSL 2 BASIC19.7■□□□□ 0.749e-6■□□□□ 10.4
YBX3P16989 DMAC2-212ENST00000594660 582 ntTSL 319.65■□□□□ 0.749e-6■□□□□ 10.4
YBX3P16989 TMEM120A-209ENST00000480899 765 ntTSL 519.58■□□□□ 0.729e-6■□□□□ 10.4
YBX3P16989 DMAC2-208ENST00000589970 979 ntTSL 2 BASIC19.49■□□□□ 0.719e-6■□□□□ 10.4
YBX3P16989 DMAC2-204ENST00000438807 1454 ntTSL 1 (best) BASIC19.39■□□□□ 0.699e-6■□□□□ 10.4
YBX3P16989 TRPV2-208ENST00000581560 586 ntTSL 219.2■□□□□ 0.669e-6■□□□□ 10.4
YBX3P16989 TMEM208-207ENST00000563953 887 ntTSL 2 BASIC19.19■□□□□ 0.669e-6■□□□□ 10.4
YBX3P16989 TRIM11-206ENST00000602582 682 ntTSL 318.91■□□□□ 0.629e-6■□□□□ 10.4
YBX3P16989 DMAC2-210ENST00000592922 1622 ntTSL 2 BASIC18.85■□□□□ 0.619e-6■□□□□ 10.4
YBX3P16989 TXNL1-205ENST00000587613 934 ntTSL 318.79■□□□□ 0.69e-6■□□□□ 10.4
YBX3P16989 DDX41-206ENST00000506965 560 ntTSL 518.75■□□□□ 0.599e-6■□□□□ 10.4
YBX3P16989 DDX41-210ENST00000509576 819 ntTSL 318.75■□□□□ 0.599e-6■□□□□ 10.4
YBX3P16989 TMEM208-201ENST00000304800 793 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.579e-6■□□□□ 10.4
YBX3P16989 C1GALT1-207ENST00000476068 1186 ntTSL 1 (best)18.58■□□□□ 0.569e-6■□□□□ 10.4
YBX3P16989 TSC22D4-201ENST00000300181 2383 ntAPPRIS P1 TSL 1 (best) BASIC18.43■□□□□ 0.549e-6■□□□□ 10.4
YBX3P16989 DDX54-203ENST00000546869 420 ntTSL 318.39■□□□□ 0.539e-6■□□□□ 10.4
YBX3P16989 CREB3L1-206ENST00000621158 2687 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.539e-6■□□□□ 10.4
YBX3P16989 TRPV2-203ENST00000475513 762 ntTSL 218.31■□□□□ 0.529e-6■□□□□ 10.4
YBX3P16989 TRPV2-204ENST00000493434 483 ntTSL 218.27■□□□□ 0.529e-6■□□□□ 10.4
YBX3P16989 TCOF1-215ENST00000515516 661 ntTSL 518.27■□□□□ 0.529e-6■□□□□ 10.4
YBX3P16989 TMEM208-212ENST00000567193 915 ntTSL 218.21■□□□□ 0.519e-6■□□□□ 10.4
YBX3P16989 TMEM208-202ENST00000561586 698 ntTSL 218.21■□□□□ 0.519e-6■□□□□ 10.4
YBX3P16989 TMEM54-206ENST00000482771 569 ntTSL 218.03■□□□□ 0.489e-6■□□□□ 10.4
YBX3P16989 WIZ-201ENST00000263381 5695 ntAPPRIS P2 TSL 2 BASIC17.71■□□□□ 0.439e-6■□□□□ 10.4
YBX3P16989 SENP3-208ENST00000583277 1578 ntTSL 217.35■□□□□ 0.379e-6■□□□□ 10.4
YBX3P16989 TXNL1-206ENST00000587807 2035 ntTSL 217.06■□□□□ 0.329e-6■□□□□ 10.4
YBX3P16989 TMEM208-203ENST00000562235 775 ntTSL 217.01■□□□□ 0.319e-6■□□□□ 10.4
YBX3P16989 TCOF1-206ENST00000445265 4825 ntAPPRIS ALT2 TSL 5 BASIC17.01■□□□□ 0.319e-6■□□□□ 10.4
YBX3P16989 MKS1-202ENST00000393119 2397 ntAPPRIS P1 TSL 1 (best) BASIC17■□□□□ 0.319e-6■□□□□ 10.4
YBX3P16989 SENP3-204ENST00000580997 679 ntTSL 216.84■□□□□ 0.299e-6■□□□□ 10.4
YBX3P16989 MKS1-204ENST00000537529 2083 ntTSL 1 (best) BASIC16.75■□□□□ 0.279e-6■□□□□ 10.4
YBX3P16989 ELF2-204ENST00000394235 4012 ntAPPRIS P1 TSL 5 BASIC16.53■□□□□ 0.249e-6■□□□□ 10.4
YBX3P16989 TMEM208-204ENST00000563168 1525 ntTSL 216.44■□□□□ 0.229e-6■□□□□ 10.4
YBX3P16989 PRUNE1-205ENST00000368937 1850 ntTSL 1 (best) BASIC16.4■□□□□ 0.229e-6■□□□□ 10.4
YBX3P16989 TRPV2-206ENST00000577865 512 ntTSL 516.23■□□□□ 0.199e-6■□□□□ 10.4
YBX3P16989 TRPV2-207ENST00000580788 530 ntTSL 316.13■□□□□ 0.179e-6■□□□□ 10.4
YBX3P16989 WIZ-206ENST00000599686 3644 ntTSL 5 BASIC16.1■□□□□ 0.179e-6■□□□□ 10.4
YBX3P16989 WIZ-207ENST00000599910 4609 ntAPPRIS ALT2 TSL 5 BASIC15.54■□□□□ 0.089e-6■□□□□ 10.4
YBX3P16989 CDC16-201ENST00000252457 2034 ntAPPRIS ALT1 TSL 1 (best) BASIC15.53■□□□□ 0.087e-12■□□□□ 10.4
YBX3P16989 CDC16-205ENST00000375308 2034 ntTSL 1 (best) BASIC15.53■□□□□ 0.087e-12■□□□□ 10.4
YBX3P16989 MKS1-203ENST00000393120 1926 ntTSL 215.27■□□□□ 0.039e-6■□□□□ 10.4
YBX3P16989 RAE1-204ENST00000411894 588 ntTSL 515.15■□□□□ 0.029e-6■□□□□ 10.4
YBX3P16989 RAE1-205ENST00000429339 480 ntTSL 515.15■□□□□ 0.029e-6■□□□□ 10.4
YBX3P16989 WIZ-202ENST00000389282 4067 ntTSL 1 (best) BASIC15.11■□□□□ 0.019e-6■□□□□ 10.4
YBX3P16989 MRPL27-206ENST00000511860 869 ntTSL 5 BASIC15.09■□□□□ 0.019e-6■□□□□ 10.4
YBX3P16989 ZNF542P-205ENST00000488113 1989 ntTSL 1 (best)15.07■□□□□ 09e-6■□□□□ 10.4
YBX3P16989 TCOF1-202ENST00000377797 5095 ntAPPRIS ALT2 TSL 5 BASIC15.06■□□□□ 09e-6■□□□□ 10.4
YBX3P16989 MRPL27-201ENST00000225969 716 ntAPPRIS P1 TSL 1 (best) BASIC15.05■□□□□ -09e-6■□□□□ 10.4
Retrieved 100 of 29,075 protein–RNA pairs in 335.6 ms