RNA–Protein interactions for RNA: ENST00000393120.6

MKS1-203, Transcript of Meckel syndrome, type 1, humanhuman

TSL 2

Gene MKS1, Length 1,926 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MKS1-203ENST00000393120 NISCHQ9Y2I1 1504 aa31.01■■■□□ 2.55
MKS1-203ENST00000393120 CCDC180Q9P1Z9 1646 aa26.7■■□□□ 1.86
MKS1-203ENST00000393120 ZCCHC6Q5VYS8 1495 aaKnown RBP26.16■■□□□ 1.78
MKS1-203ENST00000393120 SHROOM4Q9ULL8 1493 aa25.68■■□□□ 1.7
MKS1-203ENST00000393120 DCAF1Q9Y4B6 1507 aa25.66■■□□□ 1.7
MKS1-203ENST00000393120 DCAF8L2P0C7V8 631 aa25.43■■□□□ 1.66
MKS1-203ENST00000393120 MYO15BQ96JP2 1530 aa25.15■■□□□ 1.62
MKS1-203ENST00000393120 SUPT5HO00267 1087 aaKnown RBP25.02■■□□□ 1.6
MKS1-203ENST00000393120 NACADO15069 1562 aa24.79■■□□□ 1.56
MKS1-203ENST00000393120 ABCC9O60706 1549 aa24.78■■□□□ 1.56
MKS1-203ENST00000393120 SCRIBQ14160 1630 aa24.64■■□□□ 1.53
MKS1-203ENST00000393120 RB1CC1Q8TDY2 1594 aa24.41■■□□□ 1.5
MKS1-203ENST00000393120 RSF1Q96T23 1441 aaPredicted RBP24.31■■□□□ 1.48
MKS1-203ENST00000393120 CHIC1Q5VXU3 224 aa24.3■■□□□ 1.48
MKS1-203ENST00000393120 CECR2Q9BXF3 1484 aa24.06■■□□□ 1.44
MKS1-203ENST00000393120 MROH2BQ7Z745 1585 aa23.97■■□□□ 1.43
MKS1-203ENST00000393120 BAZ1AQ9NRL2 1556 aaPredicted RBP23.88■■□□□ 1.41
MKS1-203ENST00000393120 UNC13AQ9UPW8 1703 aa23.87■■□□□ 1.41
MKS1-203ENST00000393120 WIZO95785 1651 aa23.77■■□□□ 1.4
MKS1-203ENST00000393120 BICRAQ9NZM4 1560 aa23.69■■□□□ 1.38
MKS1-203ENST00000393120 SMARCA4P51532 1647 aa23.68■■□□□ 1.38
MKS1-203ENST00000393120 TOP2AP11388 1531 aaKnown RBP23.56■■□□□ 1.36
MKS1-203ENST00000393120 PABPN1Q86U42 306 aaKnown RBP eCLIP23.53■■□□□ 1.36
MKS1-203ENST00000393120 TRIM41Q8WV44 630 aa23.51■■□□□ 1.35
MKS1-203ENST00000393120 PEG3Q9GZU2 1588 aa23.4■■□□□ 1.34
MKS1-203ENST00000393120 EIF4G1Q04637 1599 aaKnown RBP23.39■■□□□ 1.34
MKS1-203ENST00000393120 LOC105371045A0A1W2PR82 267 aa23.38■■□□□ 1.33
MKS1-203ENST00000393120 CCDC88BA6NC98 1476 aa23.36■■□□□ 1.33
MKS1-203ENST00000393120 SMARCA2P51531 1590 aa23.36■■□□□ 1.33
MKS1-203ENST00000393120 ATAD2BQ9ULI0 1458 aa23.19■■□□□ 1.3
MKS1-203ENST00000393120 BAZ1BQ9UIG0 1483 aaKnown RBP23.07■■□□□ 1.28
MKS1-203ENST00000393120 FAM9AQ8IZU1 332 aaPredicted RBP23.06■■□□□ 1.28
MKS1-203ENST00000393120 ABCC8Q09428 1581 aa23.01■■□□□ 1.27
MKS1-203ENST00000393120 NCAPD3P42695 1498 aa22.92■■□□□ 1.26
MKS1-203ENST00000393120 PCGF6Q9BYE7 350 aa22.9■■□□□ 1.26
MKS1-203ENST00000393120 HMGXB3Q12766 1538 aa22.89■■□□□ 1.25
MKS1-203ENST00000393120 WRNQ14191 1432 aaPredicted RBP eCLIP22.84■■□□□ 1.25
MKS1-203ENST00000393120 EEA1Q15075 1411 aa22.84■■□□□ 1.25
MKS1-203ENST00000393120 TRIM26Q12899 539 aaPredicted RBP22.79■■□□□ 1.24
MKS1-203ENST00000393120 HRCP23327 699 aa22.75■■□□□ 1.23
MKS1-203ENST00000393120 SOGA1O94964 1423 aa22.75■■□□□ 1.23
MKS1-203ENST00000393120 SYNJ1O43426 1573 aa22.69■■□□□ 1.22
MKS1-203ENST00000393120 CSRNP3Q8WYN3 585 aa22.69■■□□□ 1.22
MKS1-203ENST00000393120 EHMT2Q96KQ7 1210 aa22.68■■□□□ 1.22
MKS1-203ENST00000393120 RUSC2Q8N2Y8 1516 aa22.62■■□□□ 1.21
MKS1-203ENST00000393120 TNIKQ9UKE5 1360 aa22.6■■□□□ 1.21
MKS1-203ENST00000393120 CFTRP13569 1480 aa22.56■■□□□ 1.2
MKS1-203ENST00000393120 TOP2BQ02880 1626 aa22.56■■□□□ 1.2
MKS1-203ENST00000393120 GOLGA3Q08378 1498 aa22.52■■□□□ 1.2
MKS1-203ENST00000393120 BIVM-ERCC5R4GMW8 1640 aa22.5■■□□□ 1.19
MKS1-203ENST00000393120 CEP162Q5TB80 1403 aa22.48■■□□□ 1.19
MKS1-203ENST00000393120 CEP164Q9UPV0 1460 aa22.47■■□□□ 1.19
MKS1-203ENST00000393120 KIF21BO75037 1637 aa22.46■■□□□ 1.19
MKS1-203ENST00000393120 CC2D2AQ9P2K1 1620 aa22.42■■□□□ 1.18
MKS1-203ENST00000393120 UBTFP17480 764 aaKnown RBP22.41■■□□□ 1.18
MKS1-203ENST00000393120 CADPSQ9ULU8 1353 aa22.37■■□□□ 1.17
MKS1-203ENST00000393120 CUX1P39880 1505 aa22.37■■□□□ 1.17
MKS1-203ENST00000393120 PRDM2Q13029 1718 aa22.34■■□□□ 1.17
MKS1-203ENST00000393120 RAPGEF2Q9Y4G8 1499 aa22.25■■□□□ 1.15
MKS1-203ENST00000393120 PRXQ9BXM0 1461 aa22.23■■□□□ 1.15
MKS1-203ENST00000393120 ERICH3Q5RHP9 1530 aa22.22■■□□□ 1.15
MKS1-203ENST00000393120 KIF27Q86VH2 1401 aa22.22■■□□□ 1.15
MKS1-203ENST00000393120 ZEB1P37275 1124 aaPredicted RBP22.2■■□□□ 1.14
MKS1-203ENST00000393120 PPARGC1BQ86YN6 1023 aaKnown RBP22.19■■□□□ 1.14
MKS1-203ENST00000393120 CLIP1P30622 1438 aa22.19■■□□□ 1.14
MKS1-203ENST00000393120 FANCD2Q9BXW9 1451 aa22.09■■□□□ 1.13
MKS1-203ENST00000393120 VPS8Q8N3P4 1428 aa22.08■■□□□ 1.13
MKS1-203ENST00000393120 FGD5Q6ZNL6 1462 aa22.03■■□□□ 1.12
MKS1-203ENST00000393120 CUX2O14529 1486 aa22.01■■□□□ 1.11
MKS1-203ENST00000393120 IGF1RP08069 1367 aa22■■□□□ 1.11
MKS1-203ENST00000393120 LAMC3Q9Y6N6 1575 aa21.98■■□□□ 1.11
MKS1-203ENST00000393120 DNMBPQ6XZF7 1577 aa21.98■■□□□ 1.11
MKS1-203ENST00000393120 NESP48681 1621 aa21.94■■□□□ 1.1
MKS1-203ENST00000393120 TOPBP1Q92547 1522 aa21.91■■□□□ 1.1
MKS1-203ENST00000393120 ARAP1Q96P48 1450 aa21.89■■□□□ 1.09
MKS1-203ENST00000393120 ABCA10Q8WWZ4 1543 aa21.88■■□□□ 1.09
MKS1-203ENST00000393120 APLP2Q06481 763 aa21.88■■□□□ 1.09
MKS1-203ENST00000393120 CARMIL1Q5VZK9 1371 aa21.88■■□□□ 1.09
MKS1-203ENST00000393120 TTBK1Q5TCY1 1321 aaPredicted RBP21.86■■□□□ 1.09
MKS1-203ENST00000393120 POLA1P09884 1462 aaPredicted RBP21.85■■□□□ 1.09
MKS1-203ENST00000393120 PDS5BQ9NTI5 1447 aa21.84■■□□□ 1.09
MKS1-203ENST00000393120 RANGAP1P46060 587 aaPredicted RBP21.82■■□□□ 1.08
MKS1-203ENST00000393120 ARHGAP35Q9NRY4 1499 aa21.79■■□□□ 1.08
MKS1-203ENST00000393120 RAD54L2Q9Y4B4 1467 aa21.79■■□□□ 1.08
MKS1-203ENST00000393120 URB2Q14146 1524 aaKnown RBP21.78■■□□□ 1.08
MKS1-203ENST00000393120 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP21.77■■□□□ 1.08
MKS1-203ENST00000393120 CCER1Q8TC90 406 aaPredicted RBP21.76■■□□□ 1.07
MKS1-203ENST00000393120 DNAJC5BQ9UF47 199 aa21.74■■□□□ 1.07
MKS1-203ENST00000393120 CUL7Q14999 1698 aa21.68■■□□□ 1.06
MKS1-203ENST00000393120 WDR97A6NE52 1622 aa21.68■■□□□ 1.06
MKS1-203ENST00000393120 MAP3K1Q13233 1512 aa21.62■■□□□ 1.05
MKS1-203ENST00000393120 KIF21AQ7Z4S6 1674 aa21.61■■□□□ 1.05
MKS1-203ENST00000393120 KANK4Q5T7N3 995 aaPredicted RBP21.61■■□□□ 1.05
MKS1-203ENST00000393120 ABCA5Q8WWZ7 1642 aa21.6■■□□□ 1.05
MKS1-203ENST00000393120 GAPVD1Q14C86 1478 aa21.57■■□□□ 1.04
MKS1-203ENST00000393120 FHAD1B1AJZ9 1412 aa21.55■■□□□ 1.04
MKS1-203ENST00000393120 HNRNPUL2Q1KMD3 747 aaKnown RBP21.55■■□□□ 1.04
MKS1-203ENST00000393120 TDRD9Q8NDG6 1382 aaKnown RBP21.55■■□□□ 1.04
MKS1-203ENST00000393120 EFCAB5A4FU69 1503 aa21.54■■□□□ 1.04
MKS1-203ENST00000393120 RRBP1Q9P2E9 1410 aaKnown RBP21.54■■□□□ 1.04
Retrieved 100 of 20,778 RNA–protein pairs in 71.2 ms