Protein–RNA interactions for Protein: Q6DD88

ATL3, Atlastin-3, humanhuman

Predictions only

Length 541 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ATL3Q6DD88 CD300LG-205ENST00000586233 942 ntAPPRIS ALT2 TSL 1 (best) BASIC17.96■□□□□ 0.47
ATL3Q6DD88 RAMP2-205ENST00000589683 858 ntTSL 3 BASIC17.96■□□□□ 0.47
ATL3Q6DD88 AC011467.4-201ENST00000594891 528 ntBASIC17.96■□□□□ 0.47
ATL3Q6DD88 DUSP13-212ENST00000605915 1015 ntTSL 5 BASIC17.96■□□□□ 0.47
ATL3Q6DD88 LIMS1-202ENST00000338045 1876 ntTSL 1 (best) BASIC17.96■□□□□ 0.47
ATL3Q6DD88 KCNH3-201ENST00000257981 3867 ntAPPRIS P1 TSL 1 (best) BASIC17.96■□□□□ 0.47
ATL3Q6DD88 SEMA7A-201ENST00000261918 3885 ntAPPRIS P1 TSL 1 (best) BASIC17.96■□□□□ 0.47
ATL3Q6DD88 PSMD2-201ENST00000310118 3449 ntAPPRIS P1 TSL 1 (best) BASIC17.96■□□□□ 0.47
ATL3Q6DD88 DNAJC7-202ENST00000426588 1774 ntTSL 2 BASIC17.96■□□□□ 0.47
ATL3Q6DD88 UBE2J1-201ENST00000435041 4290 ntAPPRIS P1 TSL 1 (best) BASIC17.96■□□□□ 0.47
ATL3Q6DD88 P3H1-201ENST00000236040 2993 ntAPPRIS ALT2 TSL 2 BASIC17.96■□□□□ 0.47
ATL3Q6DD88 GABARAPL1-218ENST00000546017 2294 ntTSL 2 BASIC17.96■□□□□ 0.47
ATL3Q6DD88 NT5DC3-201ENST00000392876 7207 ntAPPRIS P1 TSL 1 (best) BASIC17.96■□□□□ 0.46
ATL3Q6DD88 TMEM225B-202ENST00000431679 1314 ntAPPRIS P1 TSL 5 BASIC17.96■□□□□ 0.46
ATL3Q6DD88 COMMD5-203ENST00000450361 1573 ntAPPRIS P1 TSL 1 (best) BASIC17.96■□□□□ 0.46
ATL3Q6DD88 POLG2-201ENST00000539111 1564 ntAPPRIS P1 TSL 1 (best) BASIC17.96■□□□□ 0.46
ATL3Q6DD88 REPIN1-201ENST00000397281 3292 ntAPPRIS P3 TSL 2 BASIC17.96■□□□□ 0.46
ATL3Q6DD88 MZF1-201ENST00000215057 2905 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
ATL3Q6DD88 CA10-203ENST00000451037 3189 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
ATL3Q6DD88 FHL2-201ENST00000322142 1462 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
ATL3Q6DD88 CHAF1A-201ENST00000301280 3339 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
ATL3Q6DD88 KIAA1841-201ENST00000295031 3116 ntTSL 1 (best) BASIC17.95■□□□□ 0.46
ATL3Q6DD88 GRN-214ENST00000589265 1632 ntTSL 5 BASIC17.95■□□□□ 0.46
ATL3Q6DD88 APP-208ENST00000439274 2517 ntTSL 1 (best) BASIC17.95■□□□□ 0.46
ATL3Q6DD88 DDHD2-201ENST00000397166 4921 ntAPPRIS P1 TSL 2 BASIC17.95■□□□□ 0.46
ATL3Q6DD88 STOM-202ENST00000347359 870 ntTSL 2 BASIC17.95■□□□□ 0.46
ATL3Q6DD88 ZUFSP-201ENST00000368573 1225 ntTSL 5 BASIC17.95■□□□□ 0.46
ATL3Q6DD88 MIR940-201ENST00000401276 94 ntBASIC17.95■□□□□ 0.46
ATL3Q6DD88 FBLN7-204ENST00000409667 1124 ntTSL 1 (best) BASIC17.95■□□□□ 0.46
ATL3Q6DD88 NKIRAS1-204ENST00000416026 795 ntAPPRIS P2 TSL 3 BASIC17.95■□□□□ 0.46
ATL3Q6DD88 KRT18P32-201ENST00000424695 1287 ntBASIC17.95■□□□□ 0.46
ATL3Q6DD88 GHSR-202ENST00000427970 912 ntBASIC17.95■□□□□ 0.46
ATL3Q6DD88 PTGES3-204ENST00000448157 1017 ntTSL 2 BASIC17.95■□□□□ 0.46
ATL3Q6DD88 CEND1P1-201ENST00000451006 455 ntBASIC17.95■□□□□ 0.46
ATL3Q6DD88 ALG1L5P-201ENST00000482043 771 ntBASIC17.95■□□□□ 0.46
ATL3Q6DD88 AC008406.2-201ENST00000507058 532 ntTSL 3 BASIC17.95■□□□□ 0.46
ATL3Q6DD88 YBX1P5-201ENST00000509441 847 ntBASIC17.95■□□□□ 0.46
ATL3Q6DD88 AC009720.1-201ENST00000511867 586 ntTSL 2 BASIC17.95■□□□□ 0.46
ATL3Q6DD88 NDUFA4L2-206ENST00000556732 883 ntTSL 3 BASIC17.95■□□□□ 0.46
ATL3Q6DD88 RN7SL828P-201ENST00000607615 303 ntBASIC17.95■□□□□ 0.46
ATL3Q6DD88 CHMP4A-211ENST00000609024 735 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
ATL3Q6DD88 PTENP1-AS-201ENST00000627688 873 ntTSL 5 BASIC17.95■□□□□ 0.46
ATL3Q6DD88 KRT85-201ENST00000257901 2447 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
ATL3Q6DD88 CXorf40A-209ENST00000441248 2411 ntAPPRIS P3 TSL 1 (best) BASIC17.95■□□□□ 0.46
ATL3Q6DD88 PTGES3L-AARSD1-204ENST00000421990 2150 ntAPPRIS P1 TSL 2 BASIC17.95■□□□□ 0.46
ATL3Q6DD88 LINC00528-201ENST00000600723 2160 ntBASIC17.95■□□□□ 0.46
ATL3Q6DD88 NEO1-202ENST00000339362 7342 ntAPPRIS P3 TSL 5 BASIC17.95■□□□□ 0.46
ATL3Q6DD88 LINC02228-204ENST00000642115 2962 ntBASIC17.95■□□□□ 0.46
ATL3Q6DD88 NDRG2-207ENST00000397847 2084 ntTSL 1 (best) BASIC17.95■□□□□ 0.46
ATL3Q6DD88 RUNDC3B-202ENST00000338056 4099 ntTSL 2 BASIC17.95■□□□□ 0.46
ATL3Q6DD88 TLE3-223ENST00000560939 3021 ntTSL 5 BASIC17.95■□□□□ 0.46
ATL3Q6DD88 PEX11B-201ENST00000369306 1740 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
ATL3Q6DD88 SLC22A7-203ENST00000372589 2549 ntAPPRIS ALT2 TSL 2 BASIC17.95■□□□□ 0.46
ATL3Q6DD88 PCCB-218ENST00000490504 1613 ntTSL 3 BASIC17.94■□□□□ 0.46
ATL3Q6DD88 CPSF1-213ENST00000620219 4462 ntAPPRIS P1 TSL 1 (best) BASIC17.94■□□□□ 0.46
ATL3Q6DD88 TMEM115-201ENST00000266025 2197 ntAPPRIS P1 TSL 1 (best) BASIC17.94■□□□□ 0.46
ATL3Q6DD88 KIF18B-204ENST00000593135 2745 ntAPPRIS P3 TSL 5 BASIC17.94■□□□□ 0.46
ATL3Q6DD88 KLC4-204ENST00000453940 1945 ntTSL 2 BASIC17.94■□□□□ 0.46
ATL3Q6DD88 CRH-201ENST00000276571 1543 ntAPPRIS P1 TSL 1 (best) BASIC17.94■□□□□ 0.46
ATL3Q6DD88 PLIN3-202ENST00000585479 1535 ntAPPRIS ALT1 TSL 1 (best) BASIC17.94■□□□□ 0.46
ATL3Q6DD88 TCP11-206ENST00000412155 1690 ntAPPRIS ALT2 TSL 2 BASIC17.94■□□□□ 0.46
ATL3Q6DD88 RAB3IP-204ENST00000378815 2386 ntTSL 2 BASIC17.94■□□□□ 0.46
ATL3Q6DD88 CEACAM19-202ENST00000403660 1982 ntAPPRIS P3 TSL 1 (best) BASIC17.94■□□□□ 0.46
ATL3Q6DD88 C11orf71-202ENST00000623205 1980 ntAPPRIS ALT2 BASIC17.94■□□□□ 0.46
ATL3Q6DD88 ARHGAP23-221ENST00000620417 3663 ntAPPRIS ALT2 TSL 5 BASIC17.94■□□□□ 0.46
ATL3Q6DD88 SPAG7-201ENST00000206020 1058 ntAPPRIS P1 TSL 1 (best) BASIC17.94■□□□□ 0.46
ATL3Q6DD88 CD82-202ENST00000342935 967 ntTSL 5 BASIC17.94■□□□□ 0.46
ATL3Q6DD88 AL157935.1-209ENST00000415141 1105 ntTSL 2 BASIC17.94■□□□□ 0.46
ATL3Q6DD88 AL627223.1-201ENST00000416693 442 ntBASIC17.94■□□□□ 0.46
ATL3Q6DD88 LINC00404-201ENST00000418660 428 ntTSL 2 BASIC17.94■□□□□ 0.46
ATL3Q6DD88 FAM58DP-201ENST00000428076 619 ntBASIC17.94■□□□□ 0.46
ATL3Q6DD88 AL589923.1-201ENST00000441473 316 ntTSL 5 BASIC17.94■□□□□ 0.46
ATL3Q6DD88 TARDBPP1-201ENST00000442013 1203 ntBASIC17.94■□□□□ 0.46
ATL3Q6DD88 SSBP1-214ENST00000498107 636 ntAPPRIS P1 TSL 1 (best) BASIC17.94■□□□□ 0.46
ATL3Q6DD88 CNOT8-210ENST00000519404 945 ntTSL 2 BASIC17.94■□□□□ 0.46
ATL3Q6DD88 CNOT8-214ENST00000520671 923 ntTSL 2 BASIC17.94■□□□□ 0.46
ATL3Q6DD88 CNOT8-218ENST00000521583 1151 ntTSL 1 (best) BASIC17.94■□□□□ 0.46
ATL3Q6DD88 AC103736.1-203ENST00000524565 872 ntTSL 3 BASIC17.94■□□□□ 0.46
ATL3Q6DD88 AP002770.1-201ENST00000540547 428 ntTSL 4 BASIC17.94■□□□□ 0.46
ATL3Q6DD88 WASHC3-213ENST00000545679 865 ntTSL 2 BASIC17.94■□□□□ 0.46
ATL3Q6DD88 TNFRSF13B-203ENST00000579315 600 ntAPPRIS ALT2 TSL 3 BASIC17.94■□□□□ 0.46
ATL3Q6DD88 LINC00237-203ENST00000593272 630 ntTSL 4 BASIC17.94■□□□□ 0.46
ATL3Q6DD88 AC010326.2-201ENST00000602124 1020 ntAPPRIS P1 TSL 3 BASIC17.94■□□□□ 0.46
ATL3Q6DD88 AL121894.2-201ENST00000602977 491 ntBASIC17.94■□□□□ 0.46
ATL3Q6DD88 HPSE2-205ENST00000614306 447 ntTSL 5 BASIC17.94■□□□□ 0.46
ATL3Q6DD88 TBCD-202ENST00000539345 3975 ntTSL 5 BASIC17.94■□□□□ 0.46
ATL3Q6DD88 KCNQ2-204ENST00000359125 3253 ntAPPRIS P4 TSL 1 (best) BASIC17.94■□□□□ 0.46
ATL3Q6DD88 ANP32A-203ENST00000465139 2440 ntAPPRIS P2 TSL 1 (best) BASIC17.94■□□□□ 0.46
ATL3Q6DD88 ARNTL2-208ENST00000544915 6785 ntAPPRIS ALT2 TSL 5 BASIC17.94■□□□□ 0.46
ATL3Q6DD88 FAM49B-201ENST00000401979 2024 ntAPPRIS P1 TSL 2 BASIC17.94■□□□□ 0.46
ATL3Q6DD88 SCAMP2-201ENST00000268099 2453 ntAPPRIS P1 TSL 1 (best) BASIC17.94■□□□□ 0.46
ATL3Q6DD88 ALDH3B2-201ENST00000349015 2649 ntAPPRIS P1 TSL 5 BASIC17.94■□□□□ 0.46
ATL3Q6DD88 PPIL6-207ENST00000521072 4128 ntAPPRIS P1 TSL 1 (best) BASIC17.94■□□□□ 0.46
ATL3Q6DD88 AMT-224ENST00000635808 1610 ntTSL 5 BASIC17.94■□□□□ 0.46
ATL3Q6DD88 MBD1-217ENST00000588937 1761 ntAPPRIS ALT2 TSL 1 (best) BASIC17.94■□□□□ 0.46
ATL3Q6DD88 FBXO28-201ENST00000366862 5451 ntAPPRIS P1 TSL 1 (best) BASIC17.94■□□□□ 0.46
ATL3Q6DD88 ANKRD20A5P-207ENST00000581935 2089 ntTSL 2 BASIC17.94■□□□□ 0.46
ATL3Q6DD88 ABCB8-221ENST00000498578 2350 ntTSL 1 (best) BASIC17.94■□□□□ 0.46
ATL3Q6DD88 FAM208A-201ENST00000355628 5239 ntAPPRIS ALT2 TSL 1 (best) BASIC17.94■□□□□ 0.46
ATL3Q6DD88 NCOA6-206ENST00000612493 4082 ntAPPRIS ALT2 TSL 5 BASIC17.93■□□□□ 0.46
Retrieved 100 of 98,524 protein–RNA pairs in 33.2 ms