Protein–RNA interactions for Protein: P49711

CTCF, Transcriptional repressor CTCF, humanhuman

Predicted RBP Predictions only

Length 727 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CTCFP49711 ETV2-208ENST00000621247 941 ntTSL 5 BASIC18.12■□□□□ 0.49
CTCFP49711 TMEM130-202ENST00000345589 2261 ntTSL 1 (best) BASIC18.12■□□□□ 0.49
CTCFP49711 FAM184A-201ENST00000338891 4141 ntAPPRIS P4 TSL 1 (best) BASIC18.12■□□□□ 0.49
CTCFP49711 ZNF333-209ENST00000601134 1392 ntTSL 5 BASIC18.12■□□□□ 0.49
CTCFP49711 HSD17B7P2-202ENST00000494540 1401 ntTSL 1 (best) BASIC18.12■□□□□ 0.49
CTCFP49711 CCDC197-206ENST00000640978 1429 ntAPPRIS ALT2 TSL 5 BASIC18.12■□□□□ 0.49
CTCFP49711 ABLIM2-203ENST00000361737 3396 ntAPPRIS ALT2 TSL 2 BASIC18.12■□□□□ 0.49
CTCFP49711 CSNK2A1-203ENST00000400217 1451 ntTSL 2 BASIC18.12■□□□□ 0.49
CTCFP49711 TOM1L1-221ENST00000575882 2507 ntAPPRIS P2 TSL 1 (best) BASIC18.12■□□□□ 0.49
CTCFP49711 SGSH-203ENST00000570923 1546 ntTSL 2 BASIC18.12■□□□□ 0.49
CTCFP49711 NKILA-202ENST00000614771 2598 ntBASIC18.12■□□□□ 0.49
CTCFP49711 TGIF1-205ENST00000401449 1670 ntTSL 2 BASIC18.12■□□□□ 0.49
CTCFP49711 PSENEN-202ENST00000587708 1661 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
CTCFP49711 LINC01168-201ENST00000461291 5254 ntTSL 2 BASIC18.12■□□□□ 0.49
CTCFP49711 CLYBL-203ENST00000376355 6771 ntAPPRIS P1 TSL 2 BASIC18.12■□□□□ 0.49
CTCFP49711 FAM210A-201ENST00000322247 4340 ntAPPRIS P1 TSL 2 BASIC18.12■□□□□ 0.49
CTCFP49711 ARHGEF5-202ENST00000471847 1862 ntAPPRIS ALT2 TSL 1 (best) BASIC18.12■□□□□ 0.49
CTCFP49711 GABRB2-202ENST00000353437 1963 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
CTCFP49711 PFKFB3-215ENST00000536985 2094 ntTSL 2 BASIC18.11■□□□□ 0.49
CTCFP49711 PTDSS1-202ENST00000517309 5177 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
CTCFP49711 SFT2D3-201ENST00000310981 3735 ntAPPRIS P1 BASIC18.11■□□□□ 0.49
CTCFP49711 ORAOV1-206ENST00000536870 2274 ntTSL 1 (best) BASIC18.11■□□□□ 0.49
CTCFP49711 H2AFV-201ENST00000222690 3804 ntAPPRIS ALT1 TSL 2 BASIC18.11■□□□□ 0.49
CTCFP49711 QPCTL-201ENST00000012049 2310 ntAPPRIS P1 TSL 2 BASIC18.11■□□□□ 0.49
CTCFP49711 TPD52L1-213ENST00000534000 2356 ntAPPRIS P3 TSL 1 (best) BASIC18.11■□□□□ 0.49
CTCFP49711 NAP1L4-201ENST00000380542 2511 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
CTCFP49711 INSIG1-203ENST00000344756 2623 ntTSL 5 BASIC18.11■□□□□ 0.49
CTCFP49711 DENR-201ENST00000280557 2769 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
CTCFP49711 GNA13-201ENST00000439174 4922 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
CTCFP49711 AP000347.2-202ENST00000421064 3041 ntTSL 1 (best) BASIC18.11■□□□□ 0.49
CTCFP49711 PCDHA8-202ENST00000531613 5260 ntAPPRIS P2 TSL 1 (best) BASIC18.11■□□□□ 0.49
CTCFP49711 HMGN3-201ENST00000275036 831 ntTSL 1 (best) BASIC18.11■□□□□ 0.49
CTCFP49711 HMGN3-202ENST00000344726 872 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
CTCFP49711 TRO-205ENST00000399736 1115 ntAPPRIS ALT2 TSL 1 (best) BASIC18.11■□□□□ 0.49
CTCFP49711 LINC01006-202ENST00000418309 640 ntTSL 3 BASIC18.11■□□□□ 0.49
CTCFP49711 AL355483.2-201ENST00000421637 675 ntTSL 3 BASIC18.11■□□□□ 0.49
CTCFP49711 CDRT15-202ENST00000431716 655 ntAPPRIS ALT2 TSL 1 (best) BASIC18.11■□□□□ 0.49
CTCFP49711 AL691459.1-201ENST00000438589 407 ntTSL 3 BASIC18.11■□□□□ 0.49
CTCFP49711 AC061961.1-201ENST00000443901 432 ntTSL 3 BASIC18.11■□□□□ 0.49
CTCFP49711 IQCF3-203ENST00000444293 450 ntTSL 1 (best) BASIC18.11■□□□□ 0.49
CTCFP49711 AC245884.1-201ENST00000457113 529 ntTSL 3 BASIC18.11■□□□□ 0.49
CTCFP49711 CLDN11-207ENST00000486975 1139 ntTSL 2 BASIC18.11■□□□□ 0.49
CTCFP49711 RAB1B-202ENST00000527397 991 ntTSL 3 BASIC18.11■□□□□ 0.49
CTCFP49711 TMEM258-204ENST00000537328 575 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
CTCFP49711 CMTM3-215ENST00000568477 687 ntTSL 3 BASIC18.11■□□□□ 0.49
CTCFP49711 AC023824.4-202ENST00000569557 849 ntTSL 3 BASIC18.11■□□□□ 0.49
CTCFP49711 AC127024.7-201ENST00000625101 200 ntBASIC18.11■□□□□ 0.49
CTCFP49711 AC006453.1-201ENST00000636037 1257 ntBASIC18.11■□□□□ 0.49
CTCFP49711 MAEA-207ENST00000505177 1340 ntTSL 5 BASIC18.11■□□□□ 0.49
CTCFP49711 PPP1CA-201ENST00000312989 1389 ntTSL 1 (best) BASIC18.11■□□□□ 0.49
CTCFP49711 CFAP36-201ENST00000339012 1373 ntTSL 1 (best) BASIC18.11■□□□□ 0.49
CTCFP49711 NELFE-201ENST00000375425 1405 ntAPPRIS ALT2 TSL 2 BASIC18.11■□□□□ 0.49
CTCFP49711 BCL2L11-201ENST00000308659 1522 ntAPPRIS ALT2 TSL 2 BASIC18.11■□□□□ 0.49
CTCFP49711 TP73-209ENST00000603362 1668 ntTSL 5 BASIC18.11■□□□□ 0.49
CTCFP49711 ERO1A-201ENST00000395686 5285 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
CTCFP49711 HPN-202ENST00000392226 1783 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
CTCFP49711 PODXL-201ENST00000322985 2011 ntAPPRIS ALT2 TSL 1 (best) BASIC18.11■□□□□ 0.49
CTCFP49711 MEI1-215ENST00000540833 2326 ntTSL 5 BASIC18.11■□□□□ 0.49
CTCFP49711 SRGAP2B-207ENST00000641863 2367 ntAPPRIS P5 BASIC18.11■□□□□ 0.49
CTCFP49711 AC011676.5-201ENST00000624864 2660 ntBASIC18.11■□□□□ 0.49
CTCFP49711 ADAMTSL5-201ENST00000330475 2857 ntAPPRIS P1 TSL 2 BASIC18.11■□□□□ 0.49
CTCFP49711 AKIRIN1-202ENST00000432648 2741 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
CTCFP49711 ALOX12-201ENST00000251535 2358 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
CTCFP49711 FN1-208ENST00000426059 2388 ntTSL 1 (best) BASIC18.1■□□□□ 0.49
CTCFP49711 SLC47A1-209ENST00000575023 2224 ntTSL 1 (best) BASIC18.1■□□□□ 0.49
CTCFP49711 C17orf62-203ENST00000434650 2050 ntTSL 2 BASIC18.1■□□□□ 0.49
CTCFP49711 ZBTB4-202ENST00000380599 5866 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
CTCFP49711 SPDEF-201ENST00000374037 1895 ntAPPRIS P3 TSL 1 (best) BASIC18.1■□□□□ 0.49
CTCFP49711 TVP23C-204ENST00000438826 1852 ntAPPRIS ALT1 TSL 1 (best) BASIC18.1■□□□□ 0.49
CTCFP49711 RDH12-201ENST00000267502 1833 ntAPPRIS P1 TSL 5 BASIC18.1■□□□□ 0.49
CTCFP49711 RBM4-204ENST00000408993 1763 ntAPPRIS P1 TSL 5 BASIC18.1■□□□□ 0.49
CTCFP49711 PRSS54-204ENST00000567164 1799 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
CTCFP49711 AC093525.9-201ENST00000624961 1746 ntBASIC18.1■□□□□ 0.49
CTCFP49711 SYT12-203ENST00000525457 1678 ntAPPRIS P1 TSL 2 BASIC18.1■□□□□ 0.49
CTCFP49711 GRN-214ENST00000589265 1632 ntTSL 5 BASIC18.1■□□□□ 0.49
CTCFP49711 CHRDL1-205ENST00000482160 1537 ntTSL 2 BASIC18.1■□□□□ 0.49
CTCFP49711 SEC13-201ENST00000337354 1363 ntAPPRIS ALT1 TSL 1 (best) BASIC18.1■□□□□ 0.49
CTCFP49711 SHOX-202ENST00000381575 1351 ntTSL 1 (best) BASIC18.1■□□□□ 0.49
CTCFP49711 TPM1-202ENST00000288398 1295 ntTSL 1 (best) BASIC18.1■□□□□ 0.49
CTCFP49711 STK39-201ENST00000355999 3820 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
CTCFP49711 GABARAPL2-201ENST00000037243 1002 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
CTCFP49711 CXCL12-202ENST00000374426 470 ntTSL 1 (best) BASIC18.1■□□□□ 0.49
CTCFP49711 PSME1-202ENST00000382708 1136 ntTSL 2 BASIC18.1■□□□□ 0.49
CTCFP49711 PUS10-202ENST00000398658 1227 ntTSL 1 (best) BASIC18.1■□□□□ 0.49
CTCFP49711 SERPINE3-201ENST00000400389 1218 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
CTCFP49711 RPL7P35-201ENST00000446943 740 ntBASIC18.1■□□□□ 0.49
CTCFP49711 AL353637.1-201ENST00000451571 732 ntBASIC18.1■□□□□ 0.49
CTCFP49711 AC106794.1-201ENST00000506935 792 ntBASIC18.1■□□□□ 0.49
CTCFP49711 AC026410.3-201ENST00000514280 936 ntBASIC18.1■□□□□ 0.49
CTCFP49711 TVP23C-205ENST00000518321 1080 ntAPPRIS P2 TSL 1 (best) BASIC18.1■□□□□ 0.49
CTCFP49711 AC012044.1-201ENST00000603431 297 ntBASIC18.1■□□□□ 0.49
CTCFP49711 MAPRE1-201ENST00000375571 2623 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
CTCFP49711 PDCD1-201ENST00000334409 2114 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
CTCFP49711 OVOL1-203ENST00000532448 1774 ntTSL 1 (best) BASIC18.09■□□□□ 0.49
CTCFP49711 VRK1-201ENST00000216639 1745 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
CTCFP49711 MINDY2-202ENST00000450403 4820 ntAPPRIS ALT2 TSL 1 (best) BASIC18.09■□□□□ 0.49
CTCFP49711 KLK10-202ENST00000358789 1508 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
CTCFP49711 CCDC62-201ENST00000253079 3546 ntAPPRIS P2 TSL 1 (best) BASIC18.09■□□□□ 0.49
CTCFP49711 SLC22A3-201ENST00000275300 3348 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
CTCFP49711 PSMC3IP-202ENST00000393795 1416 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
Retrieved 100 of 98,524 protein–RNA pairs in 39.2 ms