Protein–RNA interactions for Protein: P41235

HNF4A, Hepatocyte nuclear factor 4-alpha, humanhuman

Predictions only

Length 474 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HNF4AP41235 CNN2P3-201ENST00000450201 906 ntBASIC15.33■□□□□ 0.04
HNF4AP41235 SSNA1-204ENST00000464553 723 ntTSL 2 BASIC15.33■□□□□ 0.04
HNF4AP41235 AC125807.1-201ENST00000483097 614 ntBASIC15.33■□□□□ 0.04
HNF4AP41235 AC021744.1-201ENST00000518354 453 ntTSL 3 BASIC15.33■□□□□ 0.04
HNF4AP41235 BRK1-201ENST00000530758 1233 ntAPPRIS P1 TSL 1 (best) BASIC15.33■□□□□ 0.04
HNF4AP41235 UBE2Q2L-201ENST00000558195 498 ntAPPRIS P1 TSL 2 BASIC15.33■□□□□ 0.04
HNF4AP41235 RPS19-202ENST00000593863 526 ntAPPRIS P1 TSL 3 BASIC15.33■□□□□ 0.04
HNF4AP41235 RN7SL828P-201ENST00000607615 303 ntBASIC15.33■□□□□ 0.04
HNF4AP41235 AC106028.4-201ENST00000614509 607 ntBASIC15.33■□□□□ 0.04
HNF4AP41235 AL136317.3-201ENST00000618497 906 ntBASIC15.33■□□□□ 0.04
HNF4AP41235 TRIM29-221ENST00000627238 510 ntTSL 5 BASIC15.33■□□□□ 0.04
HNF4AP41235 LINC02228-204ENST00000642115 2962 ntBASIC15.33■□□□□ 0.04
HNF4AP41235 DNAAF5-201ENST00000297440 3410 ntAPPRIS P2 TSL 1 (best) BASIC15.33■□□□□ 0.04
HNF4AP41235 ARHGAP9-203ENST00000424809 2569 ntTSL 2 BASIC15.33■□□□□ 0.04
HNF4AP41235 IL11RA-202ENST00000441545 1700 ntAPPRIS P1 TSL 5 BASIC15.33■□□□□ 0.04
HNF4AP41235 NPM1-201ENST00000296930 1758 ntAPPRIS P1 TSL 1 (best) BASIC15.33■□□□□ 0.04
HNF4AP41235 AP1M2-207ENST00000590923 1757 ntAPPRIS ALT1 TSL 1 (best) BASIC15.33■□□□□ 0.04
HNF4AP41235 CLASP2-203ENST00000359576 7141 ntAPPRIS P5 TSL 5 BASIC15.33■□□□□ 0.04
HNF4AP41235 MYH11-211ENST00000576790 6272 ntTSL 1 (best) BASIC15.33■□□□□ 0.04
HNF4AP41235 PLTP-205ENST00000477313 2255 ntAPPRIS P1 TSL 1 (best) BASIC15.33■□□□□ 0.04
HNF4AP41235 SSR4P1-203ENST00000599569 2260 ntBASIC15.33■□□□□ 0.04
HNF4AP41235 IRGQ-201ENST00000422989 9685 ntAPPRIS P1 TSL 5 BASIC15.33■□□□□ 0.04
HNF4AP41235 TMEM40-202ENST00000314124 2308 ntAPPRIS P3 TSL 2 BASIC15.33■□□□□ 0.04
HNF4AP41235 AC087481.3-201ENST00000602886 1894 ntBASIC15.33■□□□□ 0.04
HNF4AP41235 NEFL-203ENST00000619417 1879 ntTSL 5 BASIC15.33■□□□□ 0.04
HNF4AP41235 LRP8-202ENST00000347547 2382 ntTSL 1 (best) BASIC15.33■□□□□ 0.04
HNF4AP41235 SMARCD2-202ENST00000323347 1935 ntTSL 2 BASIC15.33■□□□□ 0.04
HNF4AP41235 PPM1B-204ENST00000378551 3877 ntAPPRIS ALT1 TSL 1 (best) BASIC15.33■□□□□ 0.04
HNF4AP41235 FDPS-201ENST00000356657 1478 ntAPPRIS P3 TSL 1 (best) BASIC15.33■□□□□ 0.04
HNF4AP41235 HACD3-206ENST00000565299 1465 ntTSL 5 BASIC15.33■□□□□ 0.04
HNF4AP41235 CD300A-205ENST00000577511 1459 ntTSL 1 (best) BASIC15.33■□□□□ 0.04
HNF4AP41235 CCP110-201ENST00000381396 5446 ntAPPRIS ALT1 TSL 1 (best) BASIC15.33■□□□□ 0.04
HNF4AP41235 ADAD1-201ENST00000296513 1961 ntAPPRIS P1 TSL 2 BASIC15.33■□□□□ 0.04
HNF4AP41235 TUBB3-206ENST00000554444 1978 ntTSL 2 BASIC15.33■□□□□ 0.04
HNF4AP41235 ZNF114-204ENST00000595607 2478 ntAPPRIS P1 TSL 1 (best) BASIC15.33■□□□□ 0.04
HNF4AP41235 AC100803.3-201ENST00000606664 2961 ntTSL 5 BASIC15.33■□□□□ 0.04
HNF4AP41235 MGAT4B-202ENST00000337755 3027 ntTSL 2 BASIC15.33■□□□□ 0.04
HNF4AP41235 CSNK1A1-202ENST00000377843 2559 ntAPPRIS ALT1 TSL 1 (best) BASIC15.32■□□□□ 0.04
HNF4AP41235 SUCO-204ENST00000608151 5790 ntTSL 5 BASIC15.32■□□□□ 0.04
HNF4AP41235 AC022400.6-201ENST00000603027 5818 ntAPPRIS P5 TSL 2 BASIC15.32■□□□□ 0.04
HNF4AP41235 PLAGL1-206ENST00000416623 3237 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
HNF4AP41235 MAP7-207ENST00000616617 4326 ntAPPRIS ALT2 TSL 5 BASIC15.32■□□□□ 0.04
HNF4AP41235 AP000704.1-201ENST00000637940 2182 ntTSL 5 BASIC15.32■□□□□ 0.04
HNF4AP41235 C21orf33-201ENST00000291577 1674 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
HNF4AP41235 C17orf74-201ENST00000333870 1651 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
HNF4AP41235 IDH3G-203ENST00000370093 1662 ntTSL 2 BASIC15.32■□□□□ 0.04
HNF4AP41235 LMNB1-201ENST00000261366 2878 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
HNF4AP41235 NPAS2-201ENST00000335681 4007 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
HNF4AP41235 NANOS1-202ENST00000425699 4017 ntAPPRIS P2 BASIC15.32■□□□□ 0.04
HNF4AP41235 EPOP-201ENST00000621654 3719 ntAPPRIS P1 BASIC15.32■□□□□ 0.04
HNF4AP41235 ATP6AP2-226ENST00000637526 1862 ntAPPRIS ALT2 TSL 5 BASIC15.32■□□□□ 0.04
HNF4AP41235 PDCD2L-201ENST00000246535 1171 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
HNF4AP41235 LRRC28-202ENST00000331450 752 ntTSL 1 (best) BASIC15.32■□□□□ 0.04
HNF4AP41235 SNHG11-201ENST00000359074 1031 ntTSL 1 (best) BASIC15.32■□□□□ 0.04
HNF4AP41235 LY6G6C-201ENST00000375819 992 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
HNF4AP41235 FO393414.2-201ENST00000405153 598 ntBASIC15.32■□□□□ 0.04
HNF4AP41235 MIPEPP3-202ENST00000424756 347 ntTSL 3 BASIC15.32■□□□□ 0.04
HNF4AP41235 FAM86GP-201ENST00000448322 971 ntBASIC15.32■□□□□ 0.04
HNF4AP41235 AC007406.4-201ENST00000539568 765 ntTSL 1 (best) BASIC15.32■□□□□ 0.04
HNF4AP41235 SPIB-207ENST00000597855 564 ntTSL 4 BASIC15.32■□□□□ 0.04
HNF4AP41235 HADH-212ENST00000638621 741 ntTSL 5 BASIC15.32■□□□□ 0.04
HNF4AP41235 HNF1B-207ENST00000621123 1971 ntTSL 1 (best) BASIC15.32■□□□□ 0.04
HNF4AP41235 MIR600HG-201ENST00000449175 5984 ntBASIC15.32■□□□□ 0.04
HNF4AP41235 ATP2A2-204ENST00000539276 4094 ntAPPRIS P4 TSL 1 (best) BASIC15.32■□□□□ 0.04
HNF4AP41235 SCLT1-204ENST00000503215 1364 ntAPPRIS ALT2 TSL 1 (best) BASIC15.32■□□□□ 0.04
HNF4AP41235 HNRNPDL-208ENST00000621267 4139 ntAPPRIS P2 TSL 1 (best) BASIC15.32■□□□□ 0.04
HNF4AP41235 ATP6V1B2-201ENST00000276390 2875 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
HNF4AP41235 KIAA0391-202ENST00000321130 1589 ntTSL 3 BASIC15.32■□□□□ 0.04
HNF4AP41235 CYP4F2-202ENST00000221700 2407 ntAPPRIS P2 TSL 1 (best) BASIC15.32■□□□□ 0.04
HNF4AP41235 POLR1D-207ENST00000621089 1606 ntTSL 1 (best) BASIC15.32■□□□□ 0.04
HNF4AP41235 PMPCB-201ENST00000249269 2472 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
HNF4AP41235 KMT2E-201ENST00000257745 6714 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
HNF4AP41235 GCK-203ENST00000395796 2539 ntTSL 1 (best) BASIC15.32■□□□□ 0.04
HNF4AP41235 RTN1-209ENST00000611068 2647 ntTSL 5 BASIC15.31■□□□□ 0.04
HNF4AP41235 MAP1LC3B-201ENST00000268607 2688 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
HNF4AP41235 FDFT1-224ENST00000618539 2660 ntAPPRIS P1 TSL 5 BASIC15.31■□□□□ 0.04
HNF4AP41235 MFN2-203ENST00000444836 4531 ntAPPRIS P1 TSL 2 BASIC15.31■□□□□ 0.04
HNF4AP41235 AC005064.1-201ENST00000422488 2725 ntTSL 1 (best) BASIC15.31■□□□□ 0.04
HNF4AP41235 RXRA-202ENST00000481739 1846 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
HNF4AP41235 CERNA1-202ENST00000560518 1972 ntTSL 2 BASIC15.31■□□□□ 0.04
HNF4AP41235 GFOD2-203ENST00000602377 1991 ntTSL 4 BASIC15.31■□□□□ 0.04
HNF4AP41235 MAP3K8-201ENST00000263056 3096 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
HNF4AP41235 AHCY-201ENST00000217426 2143 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
HNF4AP41235 LCK-206ENST00000373564 2137 ntTSL 5 BASIC15.31■□□□□ 0.04
HNF4AP41235 LATS2-201ENST00000382592 5511 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
HNF4AP41235 LAPTM5-201ENST00000294507 2223 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
HNF4AP41235 SLC3A2-204ENST00000377891 2222 ntTSL 2 BASIC15.31■□□□□ 0.04
HNF4AP41235 SLC6A2-204ENST00000561820 2268 ntTSL 5 BASIC15.31■□□□□ 0.04
HNF4AP41235 PDK2-201ENST00000007708 2384 ntTSL 2 BASIC15.31■□□□□ 0.04
HNF4AP41235 SATB2-205ENST00000443023 6194 ntTSL 5 BASIC15.31■□□□□ 0.04
HNF4AP41235 EXOC3L1-201ENST00000314586 2510 ntAPPRIS P1 TSL 2 BASIC15.31■□□□□ 0.04
HNF4AP41235 POP7-201ENST00000303151 927 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
HNF4AP41235 C6orf52-202ENST00000379586 430 ntAPPRIS ALT2 TSL 2 BASIC15.31■□□□□ 0.04
HNF4AP41235 HLA-DRB6-201ENST00000411500 1235 ntBASIC15.31■□□□□ 0.04
HNF4AP41235 LINC01089-211ENST00000543334 1282 ntTSL 4 BASIC15.31■□□□□ 0.04
HNF4AP41235 DRAM1-202ENST00000544152 1048 ntTSL 2 BASIC15.31■□□□□ 0.04
HNF4AP41235 AC004408.1-201ENST00000579256 573 ntTSL 4 BASIC15.31■□□□□ 0.04
HNF4AP41235 MIR137HG-202ENST00000424528 2639 ntTSL 2 BASIC15.31■□□□□ 0.04
HNF4AP41235 VPS26A-201ENST00000263559 2697 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
HNF4AP41235 ILF3-210ENST00000588657 2697 ntAPPRIS ALT2 TSL 5 BASIC15.31■□□□□ 0.04
Retrieved 100 of 98,524 protein–RNA pairs in 47.2 ms