Protein–RNA interactions for Protein: P16989

YBX3, Y-box-binding protein 3, humanhuman

Known RBP eCLIP

Length 372 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
YBX3P16989 MRPL28-203ENST00000429738 310 ntTSL 2 BASIC24.44■■□□□ 1.59e-6■□□□□ 10.4
YBX3P16989 ASL-205ENST00000395332 1622 ntAPPRIS P1 TSL 1 (best) BASIC24.11■■□□□ 1.459e-6■□□□□ 10.4
YBX3P16989 FLII-214ENST00000496727 792 ntTSL 523.93■■□□□ 1.429e-6■□□□□ 10.4
YBX3P16989 ATG4D-201ENST00000309469 1949 ntAPPRIS P1 TSL 1 (best) BASIC23.68■■□□□ 1.389e-6■□□□□ 10.4
YBX3P16989 MRPL28-207ENST00000461550 1478 ntTSL 523.23■■□□□ 1.319e-6■□□□□ 10.4
YBX3P16989 MRPL28-208ENST00000469744 1467 ntTSL 1 (best)23.23■■□□□ 1.319e-6■□□□□ 10.4
YBX3P16989 SMIM27-204ENST00000453396 1003 ntAPPRIS ALT2 TSL 3 BASIC23.21■■□□□ 1.319e-6■□□□□ 10.4
YBX3P16989 RABEPK-202ENST00000373538 1504 ntAPPRIS P1 TSL 1 (best) BASIC23.09■■□□□ 1.299e-6■□□□□ 10.4
YBX3P16989 SNX2-211ENST00000512394 763 ntTSL 322.83■■□□□ 1.252e-6■□□□□ 10.4
YBX3P16989 BAIAP2L1-202ENST00000462558 1250 ntTSL 1 (best)22.65■■□□□ 1.229e-6■□□□□ 10.4
YBX3P16989 DSN1-210ENST00000492703 726 ntTSL 522.57■■□□□ 1.29e-6■□□□□ 10.4
YBX3P16989 MRPL28-201ENST00000199706 1098 ntAPPRIS P1 TSL 1 (best) BASIC22.51■■□□□ 1.199e-6■□□□□ 10.4
YBX3P16989 SMIM27-202ENST00000450093 394 ntAPPRIS ALT2 TSL 222.36■■□□□ 1.179e-6■□□□□ 10.4
YBX3P16989 RABEPK-206ENST00000628863 1537 ntTSL 5 BASIC22.14■■□□□ 1.139e-6■□□□□ 10.4
YBX3P16989 EXOSC5-201ENST00000221233 1118 ntAPPRIS P1 TSL 1 (best) BASIC22.13■■□□□ 1.139e-6■□□□□ 10.4
YBX3P16989 ASL-204ENST00000395331 1538 ntTSL 5 BASIC22.04■■□□□ 1.129e-6■□□□□ 10.4
YBX3P16989 RABEPK-201ENST00000259460 1313 ntTSL 1 (best) BASIC21.83■■□□□ 1.099e-6■□□□□ 10.4
YBX3P16989 EXOSC5-203ENST00000593771 404 ntTSL 321.11■□□□□ 0.979e-6■□□□□ 10.4
YBX3P16989 COASY-209ENST00000588353 387 ntTSL 321.1■□□□□ 0.979e-6■□□□□ 10.4
YBX3P16989 MRPL28-202ENST00000389675 865 ntAPPRIS P1 TSL 3 BASIC20.81■□□□□ 0.929e-6■□□□□ 10.4
YBX3P16989 MRPL28-206ENST00000450882 619 ntTSL 320.69■□□□□ 0.99e-6■□□□□ 10.4
YBX3P16989 DSN1-205ENST00000438549 631 ntTSL 520.54■□□□□ 0.889e-6■□□□□ 10.4
YBX3P16989 MRPL28-210ENST00000483764 1512 ntTSL 1 (best)20.37■□□□□ 0.859e-6■□□□□ 10.4
YBX3P16989 MRPL28-209ENST00000481453 2229 ntTSL 220.26■□□□□ 0.839e-6■□□□□ 10.4
YBX3P16989 MTFR1-202ENST00000424808 1386 ntTSL 220.21■□□□□ 0.839e-6■□□□□ 10.4
YBX3P16989 FHL2-212ENST00000607522 759 ntTSL 2 BASIC20.17■□□□□ 0.829e-6■□□□□ 10.4
YBX3P16989 SNX2-203ENST00000505934 819 ntTSL 220.03■□□□□ 0.82e-6■□□□□ 10.4
YBX3P16989 UBTF-203ENST00000393606 2683 ntTSL 1 (best) BASIC19.91■□□□□ 0.789e-6■□□□□ 10.4
YBX3P16989 ABCB6-204ENST00000443805 679 ntTSL 219.22■□□□□ 0.679e-6■□□□□ 10.4
YBX3P16989 ABCB6-202ENST00000295750 2238 ntTSL 519.16■□□□□ 0.669e-6■□□□□ 10.4
YBX3P16989 EXOSC5-204ENST00000596905 826 ntTSL 2 BASIC18.83■□□□□ 0.69e-6■□□□□ 10.4
YBX3P16989 ATG4D-211ENST00000589753 931 ntTSL 1 (best)18.67■□□□□ 0.589e-6■□□□□ 10.4
YBX3P16989 EXOSC5-205ENST00000602129 354 ntTSL 518.23■□□□□ 0.519e-6■□□□□ 10.4
YBX3P16989 RABEPK-205ENST00000416065 733 ntTSL 317.93■□□□□ 0.469e-6■□□□□ 10.4
YBX3P16989 ABCB6-207ENST00000485773 962 ntTSL 217.93■□□□□ 0.469e-6■□□□□ 10.4
YBX3P16989 CAMK2G-205ENST00000372765 1822 ntTSL 5 BASIC17.73■□□□□ 0.439e-6■□□□□ 10.4
YBX3P16989 ASL-201ENST00000304874 2143 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.359e-6■□□□□ 10.4
YBX3P16989 EXOSC5-202ENST00000593523 716 ntTSL 217.25■□□□□ 0.359e-6■□□□□ 10.4
YBX3P16989 THUMPD3-210ENST00000515662 2390 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.349e-6■□□□□ 10.4
YBX3P16989 CAMK2G-210ENST00000472912 2629 ntTSL 216.97■□□□□ 0.319e-6■□□□□ 10.4
YBX3P16989 ABCB6-201ENST00000265316 3016 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.39e-6■□□□□ 10.4
YBX3P16989 ABCB6-208ENST00000487380 768 ntTSL 216.02■□□□□ 0.169e-6■□□□□ 10.4
YBX3P16989 ESYT1-207ENST00000550878 646 ntTSL 515.9■□□□□ 0.149e-6■□□□□ 10.4
YBX3P16989 UBTF-211ENST00000530828 721 ntTSL 515.79■□□□□ 0.129e-6■□□□□ 10.4
YBX3P16989 DSN1-203ENST00000373750 2233 ntAPPRIS P3 TSL 1 (best) BASIC15.66■□□□□ 0.19e-6■□□□□ 10.4
YBX3P16989 UBTF-209ENST00000529383 2570 ntAPPRIS P1 TSL 1 (best) BASIC15.51■□□□□ 0.079e-6■□□□□ 10.4
YBX3P16989 DSN1-204ENST00000426836 2441 ntAPPRIS P3 TSL 2 BASIC15.4■□□□□ 0.069e-6■□□□□ 10.4
YBX3P16989 UBTF-205ENST00000526094 2459 ntTSL 5 BASIC15.29■□□□□ 0.049e-6■□□□□ 10.4
YBX3P16989 DSN1-207ENST00000448110 2129 ntAPPRIS ALT2 TSL 2 BASIC15.12■□□□□ 0.019e-6■□□□□ 10.4
YBX3P16989 DSN1-201ENST00000373734 1915 ntTSL 2 BASIC14.73□□□□□ -0.059e-6■□□□□ 10.4
YBX3P16989 SMIM27-203ENST00000451672 2382 ntAPPRIS ALT2 BASIC14.27□□□□□ -0.139e-6■□□□□ 10.4
YBX3P16989 SMIM27-201ENST00000425533 903 ntTSL 214.26□□□□□ -0.139e-6■□□□□ 10.4
YBX3P16989 RABEPK-203ENST00000373544 2450 ntTSL 1 (best) BASIC13.6□□□□□ -0.239e-6■□□□□ 10.4
YBX3P16989 SLC35E1-204ENST00000469055 511 ntTSL 213.49□□□□□ -0.251e-6■□□□□ 10.4
YBX3P16989 DSN1-208ENST00000473615 2075 ntTSL 213.21□□□□□ -0.299e-6■□□□□ 10.4
YBX3P16989 MTFR1-201ENST00000262146 2640 ntAPPRIS P1 TSL 1 (best) BASIC13.18□□□□□ -0.39e-6■□□□□ 10.4
YBX3P16989 BAIAP2L1-201ENST00000005260 3622 ntAPPRIS P1 TSL 1 (best) BASIC13.15□□□□□ -0.39e-6■□□□□ 10.4
YBX3P16989 ABCB6-213ENST00000497882 3008 ntTSL 213.1□□□□□ -0.319e-6■□□□□ 10.4
YBX3P16989 DSN1-202ENST00000373740 1922 ntAPPRIS ALT2 TSL 3 BASIC13□□□□□ -0.339e-6■□□□□ 10.4
YBX3P16989 THUMPD3-206ENST00000452837 2877 ntAPPRIS P1 TSL 1 (best) BASIC12.72□□□□□ -0.379e-6■□□□□ 10.4
YBX3P16989 ACACA-234ENST00000614482 2177 ntTSL 212.69□□□□□ -0.389e-6■□□□□ 10.4
YBX3P16989 CAMK2G-201ENST00000305762 1820 ntTSL 5 BASIC12.55□□□□□ -0.49e-6■□□□□ 10.4
YBX3P16989 DSN1-209ENST00000480153 2447 ntTSL 1 (best)11.73□□□□□ -0.539e-6■□□□□ 10.4
YBX3P16989 SLC35E1-202ENST00000421082 552 ntTSL 411.19□□□□□ -0.621e-6■□□□□ 10.4
YBX3P16989 CAMK2G-202ENST00000322635 3720 ntTSL 1 (best) BASIC11.08□□□□□ -0.649e-6■□□□□ 10.4
YBX3P16989 CAMK2G-206ENST00000394762 3767 ntTSL 1 (best) BASIC10.9□□□□□ -0.679e-6■□□□□ 10.4
YBX3P16989 THUMPD3-201ENST00000345094 3961 ntAPPRIS P1 TSL 2 BASIC10.84□□□□□ -0.679e-6■□□□□ 10.4
YBX3P16989 CAMK2G-207ENST00000423381 3824 ntTSL 5 BASIC10.79□□□□□ -0.689e-6■□□□□ 10.4
YBX3P16989 CAMK2G-203ENST00000322680 3818 ntTSL 5 BASIC10.73□□□□□ -0.699e-6■□□□□ 10.4
YBX3P16989 BAIAP2L1-204ENST00000479789 521 ntTSL 310.54□□□□□ -0.729e-6■□□□□ 10.4
YBX3P16989 CAMK2G-204ENST00000351293 3563 ntAPPRIS P1 TSL 5 BASIC10.04□□□□□ -0.89e-6■□□□□ 10.4
YBX3P16989 THUMPD3-208ENST00000464045 601 ntTSL 29.85□□□□□ -0.839e-6■□□□□ 10.4
YBX3P16989 THUMPD3-202ENST00000416603 807 ntTSL 29.09□□□□□ -0.959e-6■□□□□ 10.4
YBX3P16989 MTFR1-204ENST00000517944 1017 ntTSL 37.83□□□□□ -1.169e-6■□□□□ 10.4
YBX3P16989 SMIM27-205ENST00000635960 318 ntAPPRIS P5 TSL 57.14□□□□□ -1.279e-6■□□□□ 10.4
YBX3P16989 RPS3AP26-201ENST00000398259 784 ntBASIC7.11□□□□□ -1.279e-6■□□□□ 10.4
YBX3P16989 IPO11-203ENST00000409534 1725 ntTSL 2 BASIC6.41□□□□□ -1.381e-10■□□□□ 10.4
YBX3P16989 PDCD6IP-214ENST00000489869 842 ntTSL 26.21□□□□□ -1.421e-10■□□□□ 10.4
YBX3P16989 PDCD6IP-209ENST00000473593 540 ntTSL 25.81□□□□□ -1.481e-10■□□□□ 10.4
YBX3P16989 INTS10-217ENST00000523846 704 ntTSL 35.81□□□□□ -1.489e-6■□□□□ 10.4
YBX3P16989 MTFR1-207ENST00000518800 2393 ntTSL 1 (best)5.59□□□□□ -1.519e-6■□□□□ 10.4
YBX3P16989 MTFR1-203ENST00000458689 2500 ntTSL 1 (best) BASIC5.25□□□□□ -1.579e-6■□□□□ 10.4
YBX3P16989 AREL1-205ENST00000490805 394 ntTSL 34.77□□□□□ -1.659e-6■□□□□ 10.4
YBX3P16989 CISH-202ENST00000443053 2167 ntTSL 1 (best) BASIC18.27■□□□□ 0.524e-8■□□□□ 10.4
YBX3P16989 CISH-201ENST00000348721 2043 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.394e-8■□□□□ 10.4
YBX3P16989 CISH-203ENST00000491847 5042 ntTSL 1 (best)13.13□□□□□ -0.314e-8■□□□□ 10.4
YBX3P16989 SYMPK-202ENST00000593504 5107 ntTSL 215.65■□□□□ 0.14e-8■□□□□ 10.4
YBX3P16989 SYMPK-213ENST00000599460 5449 ntTSL 1 (best) BASIC15.22■□□□□ 0.034e-8■□□□□ 10.4
YBX3P16989 SYMPK-215ENST00000600237 5164 ntTSL 514.79□□□□□ -0.044e-8■□□□□ 10.4
YBX3P16989 SYMPK-201ENST00000245934 4195 ntAPPRIS P1 TSL 1 (best) BASIC13.29□□□□□ -0.284e-8■□□□□ 10.4
YBX3P16989 SYMPK-214ENST00000599814 6537 ntTSL 2 BASIC13.2□□□□□ -0.34e-8■□□□□ 10.4
YBX3P16989 SBF1-201ENST00000348911 6045 ntAPPRIS ALT2 TSL 5 BASIC15.62■□□□□ 0.099e-6■□□□□ 10.4
YBX3P16989 SBF1-202ENST00000380817 8008 ntAPPRIS P2 TSL 1 (best) BASIC14.22□□□□□ -0.139e-6■□□□□ 10.4
YBX3P16989 C14orf166-206ENST00000556760 851 ntTSL 5 BASIC13.36□□□□□ -0.274e-7■□□□□ 10.4
YBX3P16989 C14orf166-201ENST00000261700 7075 ntAPPRIS P1 TSL 1 (best) BASIC8.27□□□□□ -1.094e-7■□□□□ 10.4
YBX3P16989 C14orf166-202ENST00000553362 683 ntTSL 27.01□□□□□ -1.294e-7■□□□□ 10.4
YBX3P16989 RBCK1-213ENST00000475269 1200 ntTSL 1 (best) BASIC26.43■■□□□ 1.822e-6■□□□□ 10.4
YBX3P16989 RBCK1-205ENST00000400245 1024 ntTSL 323.46■■□□□ 1.352e-6■□□□□ 10.4
YBX3P16989 RBCK1-210ENST00000441733 961 ntTSL 523.28■■□□□ 1.322e-6■□□□□ 10.4
YBX3P16989 RBCK1-206ENST00000400247 790 ntTSL 2 BASIC23.25■■□□□ 1.312e-6■□□□□ 10.4
Retrieved 100 of 29,075 protein–RNA pairs in 298.6 ms