Protein–RNA interactions for Protein: Q99909

SSX3, Protein SSX3, humanhuman

Predictions only

Length 188 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SSX3Q99909 CD63-201ENST00000257857 1070 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
SSX3Q99909 MDK-206ENST00000407067 1026 ntAPPRIS P2 TSL 1 (best) BASIC19.36■□□□□ 0.69
SSX3Q99909 MTX2-204ENST00000443241 799 ntTSL 3 BASIC19.36■□□□□ 0.69
SSX3Q99909 FAHD1-204ENST00000615972 757 ntTSL 5 BASIC19.36■□□□□ 0.69
SSX3Q99909 CASTOR2-201ENST00000616305 1257 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
SSX3Q99909 AC093390.2-201ENST00000638628 1007 ntTSL 5 BASIC19.36■□□□□ 0.69
SSX3Q99909 MEGF6-202ENST00000356575 5455 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
SSX3Q99909 PCOLCE2-201ENST00000295992 2021 ntAPPRIS P1 TSL 1 (best) BASIC19.35■□□□□ 0.69
SSX3Q99909 CNR1-203ENST00000369501 6031 ntAPPRIS P1 TSL 1 (best) BASIC19.35■□□□□ 0.69
SSX3Q99909 CBLN2-209ENST00000585159 2406 ntAPPRIS P1 TSL 1 (best) BASIC19.35■□□□□ 0.69
SSX3Q99909 HIRA-202ENST00000340170 3395 ntTSL 1 (best) BASIC19.35■□□□□ 0.69
SSX3Q99909 PARL-202ENST00000317096 1414 ntAPPRIS P1 TSL 1 (best) BASIC19.35■□□□□ 0.69
SSX3Q99909 FAM98C-202ENST00000343358 1006 ntTSL 1 (best) BASIC19.35■□□□□ 0.69
SSX3Q99909 YBX1P4-201ENST00000392794 808 ntBASIC19.35■□□□□ 0.69
SSX3Q99909 FLT1-202ENST00000539099 1911 ntTSL 1 (best) BASIC19.35■□□□□ 0.69
SSX3Q99909 PDE10A-205ENST00000616273 2118 ntTSL 2 BASIC19.34■□□□□ 0.69
SSX3Q99909 DGAT2-201ENST00000228027 2453 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
SSX3Q99909 VAX1-202ENST00000369206 1723 ntAPPRIS P1 TSL 5 BASIC19.34■□□□□ 0.69
SSX3Q99909 EPM2A-208ENST00000618445 1694 ntTSL 1 (best) BASIC19.34■□□□□ 0.69
SSX3Q99909 KMT2B-201ENST00000420124 8469 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
SSX3Q99909 TMEM238-201ENST00000444469 1000 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
SSX3Q99909 PVT1_1.1-201ENST00000615125 194 ntBASIC19.34■□□□□ 0.69
SSX3Q99909 C1orf232-201ENST00000634842 643 ntAPPRIS P5 TSL 5 BASIC19.34■□□□□ 0.69
SSX3Q99909 LINC00588-201ENST00000521663 1875 ntTSL 2 BASIC19.34■□□□□ 0.69
SSX3Q99909 ST3GAL5-268ENST00000640982 2465 ntAPPRIS ALT2 TSL 5 BASIC19.34■□□□□ 0.69
SSX3Q99909 CAPN10-207ENST00000391984 2644 ntAPPRIS P2 TSL 1 (best) BASIC19.34■□□□□ 0.69
SSX3Q99909 CRACR2B-201ENST00000450448 1663 ntTSL 1 (best) BASIC19.33■□□□□ 0.69
SSX3Q99909 CASP9-202ENST00000348549 1621 ntTSL 1 (best) BASIC19.33■□□□□ 0.69
SSX3Q99909 EGFL8-220ENST00000395512 1312 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.69
SSX3Q99909 MPST-203ENST00000401419 1345 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.69
SSX3Q99909 CDC16-211ENST00000628084 2058 ntTSL 5 BASIC19.33■□□□□ 0.69
SSX3Q99909 PKNOX2-AS1-201ENST00000532316 586 ntTSL 3 BASIC19.33■□□□□ 0.68
SSX3Q99909 HAGHL-205ENST00000561546 1041 ntTSL 2 BASIC19.33■□□□□ 0.68
SSX3Q99909 TARSL2-207ENST00000615656 2356 ntAPPRIS ALT2 TSL 5 BASIC19.33■□□□□ 0.68
SSX3Q99909 TIGD5-201ENST00000504548 5390 ntAPPRIS P1 BASIC19.33■□□□□ 0.68
SSX3Q99909 EDC4-201ENST00000358933 4800 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
SSX3Q99909 ATG16L2-201ENST00000321297 2243 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
SSX3Q99909 SMURF1-201ENST00000361125 5737 ntTSL 1 (best) BASIC19.32■□□□□ 0.68
SSX3Q99909 SH2B1-205ENST00000538342 1532 ntTSL 2 BASIC19.32■□□□□ 0.68
SSX3Q99909 IDNK-201ENST00000376417 511 ntTSL 5 BASIC19.32■□□□□ 0.68
SSX3Q99909 IDNK-202ENST00000376419 692 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
SSX3Q99909 VSTM2A-202ENST00000402613 1076 ntTSL 2 BASIC19.32■□□□□ 0.68
SSX3Q99909 RAX2-202ENST00000555978 2145 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
SSX3Q99909 LTB4R-202ENST00000396782 1627 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
SSX3Q99909 THRA-209ENST00000584985 2421 ntTSL 1 (best) BASIC19.32■□□□□ 0.68
SSX3Q99909 GALR2-201ENST00000329003 1364 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
SSX3Q99909 RBFOX2-209ENST00000438146 1356 ntAPPRIS P3 TSL 1 (best) BASIC19.32■□□□□ 0.68
SSX3Q99909 FZD9-201ENST00000344575 2338 ntAPPRIS P1 BASIC19.31■□□□□ 0.68
SSX3Q99909 RNF166-201ENST00000312838 1883 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
SSX3Q99909 BAMBI-201ENST00000375533 1877 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
SSX3Q99909 MYDGF-201ENST00000262947 1018 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
SSX3Q99909 NAXE-203ENST00000368235 1125 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
SSX3Q99909 FGF22-202ENST00000586042 1288 ntTSL 1 (best) BASIC19.31■□□□□ 0.68
SSX3Q99909 UBE2E3-202ENST00000410062 1570 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
SSX3Q99909 GALNT12-201ENST00000375011 2735 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
SSX3Q99909 AZIN2-201ENST00000294517 2182 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
SSX3Q99909 BTBD6-204ENST00000463376 2195 ntAPPRIS ALT2 TSL 2 BASIC19.3■□□□□ 0.68
SSX3Q99909 C15orf59-201ENST00000379822 1342 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
SSX3Q99909 GTPBP3-202ENST00000358792 1951 ntAPPRIS P4 TSL 2 BASIC19.3■□□□□ 0.68
SSX3Q99909 DGAT1-201ENST00000332324 1473 ntTSL 5 BASIC19.3■□□□□ 0.68
SSX3Q99909 CDK2AP1-201ENST00000261692 1625 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
SSX3Q99909 RNPEP-202ENST00000367286 2282 ntTSL 5 BASIC19.3■□□□□ 0.68
SSX3Q99909 GTF2E2-201ENST00000355904 1762 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
SSX3Q99909 FXYD7-204ENST00000588265 636 ntTSL 2 BASIC19.3■□□□□ 0.68
SSX3Q99909 SSX2IP-209ENST00000603677 1149 ntTSL 1 (best) BASIC19.3■□□□□ 0.68
SSX3Q99909 AMER2-202ENST00000515384 3197 ntAPPRIS P1 BASIC19.3■□□□□ 0.68
SSX3Q99909 ZDHHC14-203ENST00000359775 7380 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
SSX3Q99909 CEBPA-AS1-201ENST00000592982 2198 ntBASIC19.3■□□□□ 0.68
SSX3Q99909 PORCN-202ENST00000355961 1848 ntAPPRIS ALT1 TSL 1 (best) BASIC19.3■□□□□ 0.68
SSX3Q99909 ANKS3-203ENST00000450067 2272 ntTSL 5 BASIC19.3■□□□□ 0.68
SSX3Q99909 RPL13-202ENST00000393099 2385 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
SSX3Q99909 FAM124A-204ENST00000615498 2383 ntTSL 1 (best) BASIC19.29■□□□□ 0.68
SSX3Q99909 ZNF263-204ENST00000573578 1636 ntTSL 5 BASIC19.29■□□□□ 0.68
SSX3Q99909 FSD1-204ENST00000597590 1634 ntTSL 5 BASIC19.29■□□□□ 0.68
SSX3Q99909 UBALD2-201ENST00000327490 1593 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
SSX3Q99909 SH3RF3-201ENST00000309415 5803 ntAPPRIS P1 TSL 5 BASIC19.29■□□□□ 0.68
SSX3Q99909 RFWD2-201ENST00000308769 2124 ntTSL 1 (best) BASIC19.29■□□□□ 0.68
SSX3Q99909 AC053527.1-201ENST00000502790 685 ntTSL 3 BASIC19.29■□□□□ 0.68
SSX3Q99909 AC103834.1-201ENST00000520383 144 ntBASIC19.29■□□□□ 0.68
SSX3Q99909 PTRH1-208ENST00000543175 814 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
SSX3Q99909 MIR4508-201ENST00000584178 70 ntBASIC19.29■□□□□ 0.68
SSX3Q99909 AC019171.1-201ENST00000601251 1056 ntBASIC19.29■□□□□ 0.68
SSX3Q99909 TSPAN10-203ENST00000574882 1837 ntAPPRIS P2 TSL 1 (best) BASIC19.29■□□□□ 0.68
SSX3Q99909 FBXL8-201ENST00000258200 1658 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
SSX3Q99909 NR5A1-202ENST00000373588 3104 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
SSX3Q99909 CPOX-201ENST00000264193 2825 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
SSX3Q99909 SIX2-201ENST00000303077 2205 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
SSX3Q99909 BSPRY-201ENST00000374183 2339 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
SSX3Q99909 LONRF2P2-201ENST00000439212 571 ntBASIC19.28■□□□□ 0.68
SSX3Q99909 FAM120C-203ENST00000477084 1140 ntAPPRIS ALT2 TSL 1 (best) BASIC19.28■□□□□ 0.68
SSX3Q99909 GPRC5B-202ENST00000535671 1215 ntAPPRIS ALT2 TSL 1 (best) BASIC19.28■□□□□ 0.68
SSX3Q99909 MTERF3-204ENST00000523821 1529 ntTSL 1 (best) BASIC19.28■□□□□ 0.68
SSX3Q99909 PLEKHG4-201ENST00000360461 6782 ntAPPRIS P3 TSL 2 BASIC19.28■□□□□ 0.68
SSX3Q99909 HOXA4-204ENST00000610970 1728 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
SSX3Q99909 EVA1C-203ENST00000401402 1558 ntTSL 5 BASIC19.27■□□□□ 0.68
SSX3Q99909 TRIM28-202ENST00000341753 2709 ntTSL 1 (best) BASIC19.27■□□□□ 0.68
SSX3Q99909 ARSB-201ENST00000264914 5327 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.68
SSX3Q99909 TMEM171-202ENST00000454765 1535 ntAPPRIS P3 TSL 1 (best) BASIC19.27■□□□□ 0.68
SSX3Q99909 SNF8-202ENST00000502492 2319 ntAPPRIS P3 TSL 1 (best) BASIC19.27■□□□□ 0.68
SSX3Q99909 TP53I3-201ENST00000238721 1998 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.68
Retrieved 100 of 98,524 protein–RNA pairs in 16.6 ms