Protein–RNA interactions for Protein: Q96NZ1

FOXN4, Forkhead box protein N4, humanhuman

Predictions only

Length 517 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXN4Q96NZ1 RHOF-203ENST00000537171 1485 ntTSL 1 (best) BASIC20.82■□□□□ 0.92
FOXN4Q96NZ1 ID4-201ENST00000378700 2344 ntAPPRIS P1 TSL 1 (best) BASIC20.82■□□□□ 0.92
FOXN4Q96NZ1 CCND3-223ENST00000616010 2047 ntTSL 5 BASIC20.82■□□□□ 0.92
FOXN4Q96NZ1 EED-207ENST00000528180 1745 ntTSL 5 BASIC20.82■□□□□ 0.92
FOXN4Q96NZ1 SHISA8-202ENST00000621082 1405 ntAPPRIS P2 TSL 5 BASIC20.82■□□□□ 0.92
FOXN4Q96NZ1 ZNF641-205ENST00000547026 1823 ntAPPRIS P1 TSL 1 (best) BASIC20.82■□□□□ 0.92
FOXN4Q96NZ1 SMOX-201ENST00000278795 2164 ntTSL 1 (best) BASIC20.82■□□□□ 0.92
FOXN4Q96NZ1 JMJD8-201ENST00000412368 2038 ntAPPRIS P2 TSL 1 (best) BASIC20.82■□□□□ 0.92
FOXN4Q96NZ1 DUX4L9-201ENST00000449051 1259 ntBASIC20.81■□□□□ 0.92
FOXN4Q96NZ1 AC018755.3-202ENST00000596210 929 ntBASIC20.81■□□□□ 0.92
FOXN4Q96NZ1 UBE2E3-213ENST00000602959 909 ntAPPRIS P1 TSL 5 BASIC20.81■□□□□ 0.92
FOXN4Q96NZ1 TMEM51-205ENST00000434578 1861 ntTSL 1 (best) BASIC20.81■□□□□ 0.92
FOXN4Q96NZ1 NOCT-201ENST00000280614 1952 ntAPPRIS P1 TSL 1 (best) BASIC20.81■□□□□ 0.92
FOXN4Q96NZ1 TAZ-216ENST00000613002 1485 ntTSL 1 (best) BASIC20.81■□□□□ 0.92
FOXN4Q96NZ1 LTB4R2-205ENST00000543919 1560 ntAPPRIS P1 TSL 1 (best) BASIC20.8■□□□□ 0.92
FOXN4Q96NZ1 ST3GAL5-269ENST00000640992 2292 ntAPPRIS ALT2 TSL 5 BASIC20.8■□□□□ 0.92
FOXN4Q96NZ1 RNF19B-203ENST00000373456 2560 ntAPPRIS P3 TSL 1 (best) BASIC20.8■□□□□ 0.92
FOXN4Q96NZ1 OSCAR-202ENST00000351806 1375 ntAPPRIS ALT2 TSL 1 (best) BASIC20.8■□□□□ 0.92
FOXN4Q96NZ1 BMP2K-204ENST00000502871 3195 ntAPPRIS P3 TSL 1 (best) BASIC20.8■□□□□ 0.92
FOXN4Q96NZ1 GOLGA7-201ENST00000357743 2027 ntAPPRIS P1 TSL 1 (best) BASIC20.8■□□□□ 0.92
FOXN4Q96NZ1 MEIS3-201ENST00000331559 2104 ntAPPRIS ALT2 TSL 5 BASIC20.8■□□□□ 0.92
FOXN4Q96NZ1 ROR1-202ENST00000371080 2305 ntTSL 1 (best) BASIC20.79■□□□□ 0.92
FOXN4Q96NZ1 NKAIN3-202ENST00000523211 1988 ntAPPRIS P1 TSL 2 BASIC20.79■□□□□ 0.92
FOXN4Q96NZ1 CENPVL1-201ENST00000602548 1620 ntAPPRIS P1 BASIC20.79■□□□□ 0.92
FOXN4Q96NZ1 CENPVL2-201ENST00000634648 1620 ntAPPRIS P1 BASIC20.79■□□□□ 0.92
FOXN4Q96NZ1 RSPO4-202ENST00000400634 722 ntTSL 1 (best) BASIC20.79■□□□□ 0.92
FOXN4Q96NZ1 AL121899.1-202ENST00000411839 536 ntTSL 5 BASIC20.79■□□□□ 0.92
FOXN4Q96NZ1 ATXN3-252ENST00000620536 1044 ntTSL 5 BASIC20.79■□□□□ 0.92
FOXN4Q96NZ1 ATXN3-253ENST00000621269 936 ntTSL 5 BASIC20.79■□□□□ 0.92
FOXN4Q96NZ1 CAPNS1-216ENST00000628306 1389 ntTSL 5 BASIC20.79■□□□□ 0.92
FOXN4Q96NZ1 GNPTG-201ENST00000204679 1983 ntAPPRIS P1 TSL 1 (best) BASIC20.79■□□□□ 0.92
FOXN4Q96NZ1 HEXDC-202ENST00000337014 2285 ntTSL 1 (best) BASIC20.79■□□□□ 0.92
FOXN4Q96NZ1 NHLRC4-201ENST00000424439 2097 ntAPPRIS P1 TSL 3 BASIC20.78■□□□□ 0.92
FOXN4Q96NZ1 RBMXL2-201ENST00000306904 1874 ntAPPRIS P1 BASIC20.78■□□□□ 0.92
FOXN4Q96NZ1 TXNRD2-201ENST00000334363 1893 ntTSL 1 (best) BASIC20.78■□□□□ 0.92
FOXN4Q96NZ1 ILDR2-208ENST00000529387 1238 ntTSL 5 BASIC20.78■□□□□ 0.92
FOXN4Q96NZ1 ATG16L2-205ENST00000534905 1614 ntTSL 1 (best) BASIC20.78■□□□□ 0.92
FOXN4Q96NZ1 LDHB-203ENST00000396076 1538 ntAPPRIS P1 TSL 5 BASIC20.78■□□□□ 0.92
FOXN4Q96NZ1 GP1BB-201ENST00000366425 1553 ntAPPRIS P1 TSL 1 (best) BASIC20.77■□□□□ 0.92
FOXN4Q96NZ1 C5orf58-204ENST00000521850 2113 ntAPPRIS ALT2 TSL 1 (best) BASIC20.77■□□□□ 0.92
FOXN4Q96NZ1 RAX2-202ENST00000555978 2145 ntAPPRIS P1 TSL 1 (best) BASIC20.77■□□□□ 0.92
FOXN4Q96NZ1 RBM42-205ENST00000589871 1487 ntTSL 5 BASIC20.77■□□□□ 0.92
FOXN4Q96NZ1 COPRS-201ENST00000302362 968 ntAPPRIS P1 TSL 1 (best) BASIC20.77■□□□□ 0.92
FOXN4Q96NZ1 RPS2P7-201ENST00000447334 885 ntBASIC20.77■□□□□ 0.92
FOXN4Q96NZ1 RARRES2P1-201ENST00000474487 481 ntBASIC20.77■□□□□ 0.92
FOXN4Q96NZ1 LINC01233-202ENST00000598832 568 ntTSL 2 BASIC20.77■□□□□ 0.92
FOXN4Q96NZ1 MIR6089-201ENST00000616698 64 ntBASIC20.77■□□□□ 0.92
FOXN4Q96NZ1 ESR2-202ENST00000341099 2060 ntAPPRIS P1 TSL 1 (best) BASIC20.77■□□□□ 0.92
FOXN4Q96NZ1 FUT11-201ENST00000372841 2056 ntAPPRIS P1 TSL 1 (best) BASIC20.77■□□□□ 0.92
FOXN4Q96NZ1 SLC9A3-203ENST00000514375 2504 ntAPPRIS ALT2 TSL 1 (best) BASIC20.77■□□□□ 0.92
FOXN4Q96NZ1 DOK3-205ENST00000501403 1872 ntAPPRIS P1 TSL 5 BASIC20.77■□□□□ 0.92
FOXN4Q96NZ1 SLC22A31-206ENST00000614943 1860 ntTSL 5 BASIC20.77■□□□□ 0.92
FOXN4Q96NZ1 AP000802.1-201ENST00000500537 1934 ntTSL 1 (best) BASIC20.76■□□□□ 0.91
FOXN4Q96NZ1 KCNC3-201ENST00000376959 5447 ntAPPRIS ALT2 TSL 5 BASIC20.76■□□□□ 0.91
FOXN4Q96NZ1 RBFOX2-209ENST00000438146 1356 ntAPPRIS P3 TSL 1 (best) BASIC20.76■□□□□ 0.91
FOXN4Q96NZ1 PCMT1-202ENST00000367380 1628 ntTSL 2 BASIC20.76■□□□□ 0.91
FOXN4Q96NZ1 PCMT1-211ENST00000544496 1628 ntTSL 2 BASIC20.76■□□□□ 0.91
FOXN4Q96NZ1 DVL3-201ENST00000313143 5254 ntAPPRIS P1 TSL 1 (best) BASIC20.76■□□□□ 0.91
FOXN4Q96NZ1 FAM98C-202ENST00000343358 1006 ntTSL 1 (best) BASIC20.76■□□□□ 0.91
FOXN4Q96NZ1 PITX3-202ENST00000539804 1187 ntAPPRIS P1 TSL 5 BASIC20.76■□□□□ 0.91
FOXN4Q96NZ1 TBX2-AS1-203ENST00000590421 861 ntTSL 2 BASIC20.76■□□□□ 0.91
FOXN4Q96NZ1 ARMC10-202ENST00000323716 2635 ntTSL 1 (best) BASIC20.76■□□□□ 0.91
FOXN4Q96NZ1 LURAP1L-201ENST00000319264 1753 ntAPPRIS P1 TSL 1 (best) BASIC20.76■□□□□ 0.91
FOXN4Q96NZ1 ARSB-206ENST00000565165 1772 ntTSL 1 (best) BASIC20.76■□□□□ 0.91
FOXN4Q96NZ1 ID2-201ENST00000234091 2041 ntAPPRIS P1 TSL 1 (best) BASIC20.76■□□□□ 0.91
FOXN4Q96NZ1 RABGGTA-202ENST00000399409 2265 ntAPPRIS P1 TSL 1 (best) BASIC20.76■□□□□ 0.91
FOXN4Q96NZ1 RHOBTB3-206ENST00000506817 1432 ntTSL 2 BASIC20.76■□□□□ 0.91
FOXN4Q96NZ1 NPAS3-206ENST00000548645 2926 ntAPPRIS ALT2 TSL 1 (best) BASIC20.76■□□□□ 0.91
FOXN4Q96NZ1 INPP5J-206ENST00000404453 1613 ntTSL 1 (best) BASIC20.75■□□□□ 0.91
FOXN4Q96NZ1 ERF-201ENST00000222329 2698 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.91
FOXN4Q96NZ1 MTERF3-204ENST00000523821 1529 ntTSL 1 (best) BASIC20.75■□□□□ 0.91
FOXN4Q96NZ1 LY6H-201ENST00000342752 951 ntAPPRIS ALT2 TSL 1 (best) BASIC20.75■□□□□ 0.91
FOXN4Q96NZ1 KRT18P10-201ENST00000388836 1287 ntBASIC20.75■□□□□ 0.91
FOXN4Q96NZ1 LY6H-202ENST00000414417 1056 ntAPPRIS ALT2 TSL 1 (best) BASIC20.75■□□□□ 0.91
FOXN4Q96NZ1 LY6H-203ENST00000430474 925 ntAPPRIS P3 TSL 3 BASIC20.75■□□□□ 0.91
FOXN4Q96NZ1 MIR6765-201ENST00000614092 87 ntBASIC20.75■□□□□ 0.91
FOXN4Q96NZ1 TSPAN4-203ENST00000397397 1423 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.91
FOXN4Q96NZ1 GBX2-201ENST00000306318 2123 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.91
FOXN4Q96NZ1 AMZ2P1-201ENST00000397713 2259 ntTSL 1 (best) BASIC20.75■□□□□ 0.91
FOXN4Q96NZ1 ARG2-201ENST00000261783 2045 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.91
FOXN4Q96NZ1 HLA-L-211ENST00000482052 1765 ntBASIC20.74■□□□□ 0.91
FOXN4Q96NZ1 TMEM44-202ENST00000347147 2245 ntAPPRIS P1 TSL 1 (best) BASIC20.74■□□□□ 0.91
FOXN4Q96NZ1 CTF1-201ENST00000279804 1664 ntAPPRIS P3 TSL 1 (best) BASIC20.74■□□□□ 0.91
FOXN4Q96NZ1 MPC1-201ENST00000341756 976 ntTSL 1 (best) BASIC20.74■□□□□ 0.91
FOXN4Q96NZ1 ZDHHC1-201ENST00000348579 2047 ntAPPRIS P2 TSL 1 (best) BASIC20.74■□□□□ 0.91
FOXN4Q96NZ1 PROSER2-202ENST00000379200 1232 ntAPPRIS ALT2 BASIC20.74■□□□□ 0.91
FOXN4Q96NZ1 KRTAP5-5-201ENST00000399676 933 ntAPPRIS P1 BASIC20.74■□□□□ 0.91
FOXN4Q96NZ1 UBE2E3-202ENST00000410062 1570 ntAPPRIS P1 TSL 1 (best) BASIC20.74■□□□□ 0.91
FOXN4Q96NZ1 TMEM191C-206ENST00000432134 1129 ntAPPRIS ALT2 TSL 5 BASIC20.74■□□□□ 0.91
FOXN4Q96NZ1 PYY2-202ENST00000441253 1076 ntTSL 1 (best) BASIC20.74■□□□□ 0.91
FOXN4Q96NZ1 SEC11C-204ENST00000587834 1202 ntAPPRIS P1 TSL 1 (best) BASIC20.74■□□□□ 0.91
FOXN4Q96NZ1 MPC1-206ENST00000621630 977 ntAPPRIS ALT1 TSL 5 BASIC20.74■□□□□ 0.91
FOXN4Q96NZ1 MPC1-207ENST00000621685 1192 ntTSL 5 BASIC20.74■□□□□ 0.91
FOXN4Q96NZ1 HSPBP1-201ENST00000255631 1768 ntAPPRIS P1 TSL 1 (best) BASIC20.74■□□□□ 0.91
FOXN4Q96NZ1 DUSP22-201ENST00000344450 1485 ntTSL 1 (best) BASIC20.74■□□□□ 0.91
FOXN4Q96NZ1 TSPAN4-202ENST00000397396 1332 ntTSL 5 BASIC20.74■□□□□ 0.91
FOXN4Q96NZ1 ST3GAL5-231ENST00000639119 2131 ntTSL 5 BASIC20.74■□□□□ 0.91
FOXN4Q96NZ1 LINC00543-201ENST00000567234 1845 ntBASIC20.74■□□□□ 0.91
FOXN4Q96NZ1 RFC2-201ENST00000055077 1695 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
FOXN4Q96NZ1 DYRK3-203ENST00000367109 2163 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
Retrieved 100 of 98,524 protein–RNA pairs in 18.2 ms