Protein–RNA interactions for Protein: Q709C8

VPS13C, Vacuolar protein sorting-associated protein 13C, humanhuman

Predictions only

Length 3,753 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13CQ709C8 LLGL2-202ENST00000375227 1374 ntTSL 1 (best) BASIC19.75■□□□□ 0.75
VPS13CQ709C8 STX18-205ENST00000505286 1380 ntTSL 1 (best) BASIC19.75■□□□□ 0.75
VPS13CQ709C8 PPIL6-203ENST00000440797 1693 ntTSL 1 (best) BASIC19.75■□□□□ 0.75
VPS13CQ709C8 RINL-208ENST00000598904 1846 ntAPPRIS P3 TSL 5 BASIC19.75■□□□□ 0.75
VPS13CQ709C8 COMMD5-201ENST00000305103 1373 ntAPPRIS P1 TSL 1 (best) BASIC19.75■□□□□ 0.75
VPS13CQ709C8 ITGA9-203ENST00000422441 2282 ntTSL 1 (best) BASIC19.75■□□□□ 0.75
VPS13CQ709C8 CCDC166-201ENST00000542437 1320 ntAPPRIS P1 TSL 2 BASIC19.75■□□□□ 0.75
VPS13CQ709C8 CD72-202ENST00000378430 585 ntTSL 3 BASIC19.74■□□□□ 0.75
VPS13CQ709C8 SHOX2-201ENST00000389589 2072 ntAPPRIS P3 TSL 1 (best) BASIC19.74■□□□□ 0.75
VPS13CQ709C8 FOXO3B-201ENST00000395675 1928 ntBASIC19.74■□□□□ 0.75
VPS13CQ709C8 FAM66E-202ENST00000533615 2087 ntTSL 2 BASIC19.74■□□□□ 0.75
VPS13CQ709C8 STMN4-201ENST00000265770 1250 ntAPPRIS P1 TSL 1 (best) BASIC19.74■□□□□ 0.75
VPS13CQ709C8 RASA4CP-201ENST00000424092 1398 ntBASIC19.74■□□□□ 0.75
VPS13CQ709C8 EDA-201ENST00000338901 1233 ntBASIC19.73■□□□□ 0.75
VPS13CQ709C8 AP001330.3-201ENST00000520123 633 ntBASIC19.73■□□□□ 0.75
VPS13CQ709C8 FAM174B-207ENST00000555748 866 ntAPPRIS ALT2 TSL 3 BASIC19.73■□□□□ 0.75
VPS13CQ709C8 GPR75-ASB3-201ENST00000406625 2113 ntAPPRIS P1 TSL 2 BASIC19.73■□□□□ 0.75
VPS13CQ709C8 PARL-206ENST00000435888 1098 ntTSL 5 BASIC19.72■□□□□ 0.75
VPS13CQ709C8 GRAMD1B-217ENST00000640939 1212 ntTSL 5 BASIC19.72■□□□□ 0.75
VPS13CQ709C8 AP004609.3-201ENST00000610705 1884 ntBASIC19.72■□□□□ 0.75
VPS13CQ709C8 C19orf60-201ENST00000358607 839 ntAPPRIS P3 TSL 1 (best) BASIC19.72■□□□□ 0.75
VPS13CQ709C8 C19orf60-202ENST00000450195 702 ntAPPRIS ALT2 TSL 1 (best) BASIC19.72■□□□□ 0.75
VPS13CQ709C8 SCO2-204ENST00000543927 1051 ntAPPRIS P1 TSL 2 BASIC19.72■□□□□ 0.75
VPS13CQ709C8 HOXD13-201ENST00000392539 2240 ntAPPRIS P1 TSL 1 (best) BASIC19.72■□□□□ 0.75
VPS13CQ709C8 CCDC160-201ENST00000370809 1299 ntAPPRIS P1 TSL 5 BASIC19.72■□□□□ 0.75
VPS13CQ709C8 PHF11-202ENST00000378319 1359 ntAPPRIS P3 TSL 1 (best) BASIC19.72■□□□□ 0.75
VPS13CQ709C8 NR6A1-201ENST00000344523 1846 ntAPPRIS ALT2 TSL 5 BASIC19.71■□□□□ 0.75
VPS13CQ709C8 PEX7-201ENST00000318471 1464 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
VPS13CQ709C8 GMPPB-202ENST00000308388 1582 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
VPS13CQ709C8 CTSA-203ENST00000372459 1972 ntTSL 1 (best) BASIC19.71■□□□□ 0.75
VPS13CQ709C8 CRLF1-201ENST00000392386 1792 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
VPS13CQ709C8 NRIP3-203ENST00000531090 980 ntTSL 2 BASIC19.7■□□□□ 0.74
VPS13CQ709C8 HOXB3-201ENST00000311626 2642 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
VPS13CQ709C8 B3GALT4-204ENST00000451237 1694 ntAPPRIS P1 BASIC19.7■□□□□ 0.74
VPS13CQ709C8 METTL23-201ENST00000341249 1155 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
VPS13CQ709C8 MCRIP1-210ENST00000576431 577 ntTSL 5 BASIC19.7■□□□□ 0.74
VPS13CQ709C8 RTN2-202ENST00000344680 2063 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
VPS13CQ709C8 TANGO2-214ENST00000447208 2086 ntTSL 3 BASIC19.7■□□□□ 0.74
VPS13CQ709C8 MEIS3-204ENST00000558555 1715 ntAPPRIS ALT2 TSL 5 BASIC19.7■□□□□ 0.74
VPS13CQ709C8 TSPAN2-201ENST00000369515 793 ntTSL 3 BASIC19.69■□□□□ 0.74
VPS13CQ709C8 AP006621.3-202ENST00000530083 765 ntTSL 3 BASIC19.69■□□□□ 0.74
VPS13CQ709C8 SYNGR3-206ENST00000618464 1213 ntTSL 1 (best) BASIC19.69■□□□□ 0.74
VPS13CQ709C8 PLEKHF1-201ENST00000436066 2084 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
VPS13CQ709C8 MAG-206ENST00000597035 542 ntTSL 4 BASIC19.69■□□□□ 0.74
VPS13CQ709C8 VAMP2-204ENST00000488857 874 ntAPPRIS ALT1 TSL 3 BASIC19.68■□□□□ 0.74
VPS13CQ709C8 SMARCA5-AS1-201ENST00000500800 945 ntTSL 1 (best) BASIC19.68■□□□□ 0.74
VPS13CQ709C8 AC092902.2-206ENST00000625484 846 ntTSL 5 BASIC19.68■□□□□ 0.74
VPS13CQ709C8 EVA1C-203ENST00000401402 1558 ntTSL 5 BASIC19.68■□□□□ 0.74
VPS13CQ709C8 CRYAA-201ENST00000291554 1139 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
VPS13CQ709C8 C1QTNF12-201ENST00000330388 1036 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
VPS13CQ709C8 UBL7-202ENST00000395081 1427 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
VPS13CQ709C8 BTBD6-205ENST00000536364 1973 ntAPPRIS P2 TSL 5 BASIC19.68■□□□□ 0.74
VPS13CQ709C8 CYB561D2-205ENST00000425346 1319 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
VPS13CQ709C8 LAMTOR1-201ENST00000278671 1179 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
VPS13CQ709C8 AC108002.2-201ENST00000519782 340 ntTSL 4 BASIC19.67■□□□□ 0.74
VPS13CQ709C8 PAOX-203ENST00000357296 1633 ntTSL 1 (best) BASIC19.67■□□□□ 0.74
VPS13CQ709C8 P2RX4-203ENST00000359949 1836 ntTSL 5 BASIC19.67■□□□□ 0.74
VPS13CQ709C8 FHL2-203ENST00000358129 1578 ntTSL 5 BASIC19.66■□□□□ 0.74
VPS13CQ709C8 ECHDC3-201ENST00000379215 1649 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
VPS13CQ709C8 HNRNPD-203ENST00000353341 1585 ntAPPRIS ALT1 TSL 1 (best) BASIC19.66■□□□□ 0.74
VPS13CQ709C8 SYT6-210ENST00000641643 1587 ntBASIC19.66■□□□□ 0.74
VPS13CQ709C8 AMH-201ENST00000221496 1821 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
VPS13CQ709C8 PYGO2-201ENST00000368456 1306 ntTSL 2 BASIC19.66■□□□□ 0.74
VPS13CQ709C8 LACTB-201ENST00000261893 1972 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
VPS13CQ709C8 RCCD1-203ENST00000555155 1871 ntAPPRIS ALT1 TSL 5 BASIC19.66■□□□□ 0.74
VPS13CQ709C8 AQP1-202ENST00000409611 1140 ntTSL 1 (best) BASIC19.66■□□□□ 0.74
VPS13CQ709C8 GATA3-AS1-204ENST00000438755 675 ntTSL 1 (best) BASIC19.66■□□□□ 0.74
VPS13CQ709C8 NEBL-AS1-202ENST00000439097 661 ntTSL 2 BASIC19.66■□□□□ 0.74
VPS13CQ709C8 HDGF-201ENST00000357325 2380 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
VPS13CQ709C8 AC096887.2-201ENST00000623443 1957 ntBASIC19.65■□□□□ 0.74
VPS13CQ709C8 C19orf12-204ENST00000392276 1912 ntTSL 1 (best) BASIC19.65■□□□□ 0.74
VPS13CQ709C8 MOB4-204ENST00000409360 1447 ntTSL 5 BASIC19.65■□□□□ 0.74
VPS13CQ709C8 SLC35A2-209ENST00000452555 1563 ntTSL 2 BASIC19.65■□□□□ 0.74
VPS13CQ709C8 HERC2P4-206ENST00000568097 1062 ntTSL 5 BASIC19.65■□□□□ 0.74
VPS13CQ709C8 TMEM260-202ENST00000538838 1638 ntTSL 1 (best) BASIC19.65■□□□□ 0.74
VPS13CQ709C8 GFRA4-201ENST00000290417 1427 ntAPPRIS ALT2 TSL 1 (best) BASIC19.65■□□□□ 0.74
VPS13CQ709C8 GUK1-207ENST00000366726 873 ntAPPRIS P3 TSL 3 BASIC19.65■□□□□ 0.74
VPS13CQ709C8 PRSS22-203ENST00000571228 1037 ntTSL 2 BASIC19.65■□□□□ 0.74
VPS13CQ709C8 BSCL2-205ENST00000403550 1693 ntAPPRIS P3 TSL 5 BASIC19.64■□□□□ 0.74
VPS13CQ709C8 AL136162.1-201ENST00000607711 1078 ntBASIC19.64■□□□□ 0.74
VPS13CQ709C8 RARRES2P11-201ENST00000635158 484 ntBASIC19.64■□□□□ 0.74
VPS13CQ709C8 C15orf59-201ENST00000379822 1342 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.74
VPS13CQ709C8 AC091305.1-201ENST00000479476 895 ntBASIC19.64■□□□□ 0.73
VPS13CQ709C8 GRAMD4P4-201ENST00000613563 1115 ntBASIC19.64■□□□□ 0.73
VPS13CQ709C8 LY6E-201ENST00000292494 1181 ntAPPRIS P2 TSL 1 (best) BASIC19.63■□□□□ 0.73
VPS13CQ709C8 EXOC3L4-201ENST00000380069 2293 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
VPS13CQ709C8 SUSD3-202ENST00000375472 1195 ntAPPRIS P3 TSL 1 (best) BASIC19.63■□□□□ 0.73
VPS13CQ709C8 LINC01942-201ENST00000521373 513 ntTSL 4 BASIC19.63■□□□□ 0.73
VPS13CQ709C8 PIK3R2-207ENST00000617130 2187 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
VPS13CQ709C8 PSMG1-201ENST00000331573 2154 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
VPS13CQ709C8 ERN1-208ENST00000606895 2068 ntBASIC19.62■□□□□ 0.73
VPS13CQ709C8 USP2-204ENST00000525735 1704 ntAPPRIS ALT1 TSL 1 (best) BASIC19.62■□□□□ 0.73
VPS13CQ709C8 SMIM29-205ENST00000468145 903 ntTSL 2 BASIC19.62■□□□□ 0.73
VPS13CQ709C8 SMIM29-207ENST00000481533 1053 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
VPS13CQ709C8 TYROBP-203ENST00000544690 522 ntTSL 1 (best) BASIC19.62■□□□□ 0.73
VPS13CQ709C8 IRAK1-205ENST00000429936 2127 ntTSL 5 BASIC19.62■□□□□ 0.73
VPS13CQ709C8 C11orf96-201ENST00000339446 1308 ntTSL 5 BASIC19.62■□□□□ 0.73
VPS13CQ709C8 DENND3-207ENST00000518347 850 ntTSL 2 BASIC19.62■□□□□ 0.73
VPS13CQ709C8 ORAI3-202ENST00000562699 628 ntTSL 2 BASIC19.62■□□□□ 0.73
VPS13CQ709C8 ZNF784-202ENST00000591479 1559 ntTSL 1 (best) BASIC19.62■□□□□ 0.73
Retrieved 100 of 98,524 protein–RNA pairs in 80.3 ms