Protein–RNA interactions for Protein: Q5THJ4

VPS13D, Vacuolar protein sorting-associated protein 13D, humanhuman

Predictions only

Length 4,388 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13DQ5THJ4 TMUB1-202ENST00000392818 1563 ntAPPRIS P1 TSL 1 (best) BASIC15.98■□□□□ 0.15
VPS13DQ5THJ4 NR6A1-201ENST00000344523 1846 ntAPPRIS ALT2 TSL 5 BASIC15.98■□□□□ 0.15
VPS13DQ5THJ4 RAB33A-201ENST00000257017 1258 ntAPPRIS P1 TSL 1 (best) BASIC15.98■□□□□ 0.15
VPS13DQ5THJ4 SCO2-204ENST00000543927 1051 ntAPPRIS P1 TSL 2 BASIC15.98■□□□□ 0.15
VPS13DQ5THJ4 TOP1MT-208ENST00000519148 1868 ntTSL 2 BASIC15.98■□□□□ 0.15
VPS13DQ5THJ4 EEF1D-201ENST00000317198 1458 ntAPPRIS ALT2 TSL 5 BASIC15.98■□□□□ 0.15
VPS13DQ5THJ4 TSPAN10-203ENST00000574882 1837 ntAPPRIS P2 TSL 1 (best) BASIC15.98■□□□□ 0.15
VPS13DQ5THJ4 PAIP1-208ENST00000514514 1603 ntTSL 5 BASIC15.98■□□□□ 0.15
VPS13DQ5THJ4 LLGL2-202ENST00000375227 1374 ntTSL 1 (best) BASIC15.98■□□□□ 0.15
VPS13DQ5THJ4 SLC35A2-209ENST00000452555 1563 ntTSL 2 BASIC15.97■□□□□ 0.15
VPS13DQ5THJ4 GMPPB-202ENST00000308388 1582 ntAPPRIS P1 TSL 1 (best) BASIC15.97■□□□□ 0.15
VPS13DQ5THJ4 TANGO2-214ENST00000447208 2086 ntTSL 3 BASIC15.97■□□□□ 0.15
VPS13DQ5THJ4 STOML2-201ENST00000356493 1278 ntAPPRIS P1 TSL 1 (best) BASIC15.97■□□□□ 0.15
VPS13DQ5THJ4 TMEM203-201ENST00000343666 1557 ntAPPRIS P1 BASIC15.97■□□□□ 0.15
VPS13DQ5THJ4 MEX3D-201ENST00000402693 2850 ntAPPRIS P2 TSL 1 (best) BASIC15.97■□□□□ 0.15
VPS13DQ5THJ4 AC136475.3-202ENST00000534742 812 ntTSL 2 BASIC15.97■□□□□ 0.15
VPS13DQ5THJ4 ATP10A-207ENST00000619904 988 ntTSL 5 BASIC15.97■□□□□ 0.15
VPS13DQ5THJ4 FSD1-204ENST00000597590 1634 ntTSL 5 BASIC15.97■□□□□ 0.15
VPS13DQ5THJ4 IFNL4-201ENST00000606380 1637 ntAPPRIS P5 TSL 1 (best) BASIC15.97■□□□□ 0.15
VPS13DQ5THJ4 RRAD-201ENST00000299759 1569 ntAPPRIS P1 TSL 1 (best) BASIC15.97■□□□□ 0.15
VPS13DQ5THJ4 ZNF821-201ENST00000313565 1874 ntTSL 1 (best) BASIC15.97■□□□□ 0.15
VPS13DQ5THJ4 ZDHHC20-203ENST00000400590 1869 ntAPPRIS ALT2 TSL 5 BASIC15.97■□□□□ 0.15
VPS13DQ5THJ4 MEIS3-204ENST00000558555 1715 ntAPPRIS ALT2 TSL 5 BASIC15.97■□□□□ 0.15
VPS13DQ5THJ4 ALKAL2-204ENST00000403610 1389 ntAPPRIS P1 TSL 1 (best) BASIC15.97■□□□□ 0.15
VPS13DQ5THJ4 HSPE1-203ENST00000409729 478 ntTSL 2 BASIC15.96■□□□□ 0.15
VPS13DQ5THJ4 AC004448.1-201ENST00000458332 883 ntBASIC15.96■□□□□ 0.15
VPS13DQ5THJ4 AC105265.2-201ENST00000467189 838 ntBASIC15.96■□□□□ 0.15
VPS13DQ5THJ4 NRIP3-203ENST00000531090 980 ntTSL 2 BASIC15.96■□□□□ 0.15
VPS13DQ5THJ4 AC092902.2-206ENST00000625484 846 ntTSL 5 BASIC15.96■□□□□ 0.15
VPS13DQ5THJ4 PEX7-201ENST00000318471 1464 ntAPPRIS P1 TSL 1 (best) BASIC15.96■□□□□ 0.15
VPS13DQ5THJ4 PFKFB4-202ENST00000383734 1491 ntTSL 1 (best) BASIC15.96■□□□□ 0.15
VPS13DQ5THJ4 CRLF1-201ENST00000392386 1792 ntAPPRIS P1 TSL 1 (best) BASIC15.96■□□□□ 0.15
VPS13DQ5THJ4 FAM149A-201ENST00000227065 2708 ntAPPRIS P2 TSL 1 (best) BASIC15.96■□□□□ 0.15
VPS13DQ5THJ4 NKX2-8-201ENST00000258829 1261 ntAPPRIS P1 TSL 1 (best) BASIC15.96■□□□□ 0.15
VPS13DQ5THJ4 SMARCA5-AS1-201ENST00000500800 945 ntTSL 1 (best) BASIC15.96■□□□□ 0.15
VPS13DQ5THJ4 IRAK1-205ENST00000429936 2127 ntTSL 5 BASIC15.96■□□□□ 0.15
VPS13DQ5THJ4 PCMT1-201ENST00000367378 1293 ntAPPRIS P3 TSL 1 (best) BASIC15.96■□□□□ 0.14
VPS13DQ5THJ4 GTF2E2-201ENST00000355904 1762 ntAPPRIS P1 TSL 1 (best) BASIC15.96■□□□□ 0.14
VPS13DQ5THJ4 SDS-201ENST00000257549 1606 ntAPPRIS P1 TSL 2 BASIC15.95■□□□□ 0.14
VPS13DQ5THJ4 CYC1-201ENST00000318911 1240 ntAPPRIS P1 TSL 1 (best) BASIC15.95■□□□□ 0.14
VPS13DQ5THJ4 SYT8-201ENST00000341958 1556 ntAPPRIS ALT2 TSL 5 BASIC15.95■□□□□ 0.14
VPS13DQ5THJ4 NOX4-204ENST00000393282 560 ntTSL 1 (best) BASIC15.95■□□□□ 0.14
VPS13DQ5THJ4 ERRFI1-203ENST00000469499 995 ntTSL 3 BASIC15.95■□□□□ 0.14
VPS13DQ5THJ4 ATP6V0B-204ENST00000471859 865 ntTSL 5 BASIC15.95■□□□□ 0.14
VPS13DQ5THJ4 FAM174B-207ENST00000555748 866 ntAPPRIS ALT2 TSL 3 BASIC15.95■□□□□ 0.14
VPS13DQ5THJ4 MAG-206ENST00000597035 542 ntTSL 4 BASIC15.95■□□□□ 0.14
VPS13DQ5THJ4 YRDC-201ENST00000373044 1826 ntAPPRIS P1 TSL 1 (best) BASIC15.95■□□□□ 0.14
VPS13DQ5THJ4 LAMTOR1-201ENST00000278671 1179 ntAPPRIS P1 TSL 1 (best) BASIC15.95■□□□□ 0.14
VPS13DQ5THJ4 PPP1CC-206ENST00000550991 1882 ntTSL 2 BASIC15.95■□□□□ 0.14
VPS13DQ5THJ4 FAM222B-208ENST00000581381 556 ntTSL 4 BASIC15.95■□□□□ 0.14
VPS13DQ5THJ4 RCCD1-203ENST00000555155 1871 ntAPPRIS ALT1 TSL 5 BASIC15.94■□□□□ 0.14
VPS13DQ5THJ4 C1QTNF12-201ENST00000330388 1036 ntAPPRIS P1 TSL 1 (best) BASIC15.94■□□□□ 0.14
VPS13DQ5THJ4 AIPL1-206ENST00000571740 1202 ntAPPRIS ALT2 TSL 1 (best) BASIC15.94■□□□□ 0.14
VPS13DQ5THJ4 C16orf87-201ENST00000285697 1585 ntAPPRIS P1 TSL 1 (best) BASIC15.94■□□□□ 0.14
VPS13DQ5THJ4 FAIM-203ENST00000393034 927 ntAPPRIS P3 TSL 2 BASIC15.94■□□□□ 0.14
VPS13DQ5THJ4 VAMP2-204ENST00000488857 874 ntAPPRIS ALT1 TSL 3 BASIC15.94■□□□□ 0.14
VPS13DQ5THJ4 RAB3IL1-202ENST00000394836 2284 ntAPPRIS P1 TSL 1 (best) BASIC15.94■□□□□ 0.14
VPS13DQ5THJ4 PLSCR3-209ENST00000574401 2032 ntAPPRIS P1 TSL 1 (best) BASIC15.93■□□□□ 0.14
VPS13DQ5THJ4 FAIM-202ENST00000360570 1157 ntAPPRIS ALT1 TSL 3 BASIC15.93■□□□□ 0.14
VPS13DQ5THJ4 CNNM2-201ENST00000369875 2059 ntTSL 1 (best) BASIC15.93■□□□□ 0.14
VPS13DQ5THJ4 KCNF1-201ENST00000295082 2289 ntAPPRIS P1 BASIC15.93■□□□□ 0.14
VPS13DQ5THJ4 CCDC107-203ENST00000378407 899 ntAPPRIS ALT2 TSL 2 BASIC15.93■□□□□ 0.14
VPS13DQ5THJ4 AL136162.1-201ENST00000607711 1078 ntBASIC15.93■□□□□ 0.14
VPS13DQ5THJ4 ITGA9-203ENST00000422441 2282 ntTSL 1 (best) BASIC15.93■□□□□ 0.14
VPS13DQ5THJ4 SHF-208ENST00000560734 1731 ntTSL 3 BASIC15.93■□□□□ 0.14
VPS13DQ5THJ4 BTBD6-205ENST00000536364 1973 ntAPPRIS P2 TSL 5 BASIC15.93■□□□□ 0.14
VPS13DQ5THJ4 LINC00588-201ENST00000521663 1875 ntTSL 2 BASIC15.93■□□□□ 0.14
VPS13DQ5THJ4 HERC2P4-206ENST00000568097 1062 ntTSL 5 BASIC15.93■□□□□ 0.14
VPS13DQ5THJ4 TSPOAP1-AS1-203ENST00000579527 2042 ntTSL 2 BASIC15.93■□□□□ 0.14
VPS13DQ5THJ4 PRSS22-201ENST00000161006 1386 ntAPPRIS P1 TSL 1 (best) BASIC15.92■□□□□ 0.14
VPS13DQ5THJ4 BIN1-204ENST00000348750 2074 ntTSL 1 (best) BASIC15.92■□□□□ 0.14
VPS13DQ5THJ4 ANKS3-203ENST00000450067 2272 ntTSL 5 BASIC15.92■□□□□ 0.14
VPS13DQ5THJ4 PRELID2-204ENST00000505416 738 ntAPPRIS P2 TSL 3 BASIC15.92■□□□□ 0.14
VPS13DQ5THJ4 FEZF2-202ENST00000475839 1918 ntAPPRIS P1 TSL 1 (best) BASIC15.92■□□□□ 0.14
VPS13DQ5THJ4 BTBD6-204ENST00000463376 2195 ntAPPRIS ALT2 TSL 2 BASIC15.92■□□□□ 0.14
VPS13DQ5THJ4 CCR10-201ENST00000332438 1773 ntAPPRIS P1 TSL 1 (best) BASIC15.92■□□□□ 0.14
VPS13DQ5THJ4 TMEM179-204ENST00000556573 1430 ntAPPRIS P1 TSL 3 BASIC15.92■□□□□ 0.14
VPS13DQ5THJ4 ANKRD20A6P-201ENST00000618763 204 ntBASIC15.92■□□□□ 0.14
VPS13DQ5THJ4 PIK3R2-207ENST00000617130 2187 ntAPPRIS P1 TSL 1 (best) BASIC15.92■□□□□ 0.14
VPS13DQ5THJ4 FAM66E-202ENST00000533615 2087 ntTSL 2 BASIC15.92■□□□□ 0.14
VPS13DQ5THJ4 CLPSL2-202ENST00000403376 405 ntAPPRIS P3 TSL 1 (best) BASIC15.91■□□□□ 0.14
VPS13DQ5THJ4 AC097381.1-201ENST00000429019 1296 ntBASIC15.91■□□□□ 0.14
VPS13DQ5THJ4 AC090877.2-201ENST00000558441 1738 ntBASIC15.91■□□□□ 0.14
VPS13DQ5THJ4 RCE1-202ENST00000524506 1379 ntTSL 5 BASIC15.91■□□□□ 0.14
VPS13DQ5THJ4 GUK1-207ENST00000366726 873 ntAPPRIS P3 TSL 3 BASIC15.91■□□□□ 0.14
VPS13DQ5THJ4 CNPY3-202ENST00000394142 954 ntTSL 5 BASIC15.91■□□□□ 0.14
VPS13DQ5THJ4 FRMD8-208ENST00000531296 366 ntTSL 1 (best) BASIC15.91■□□□□ 0.14
VPS13DQ5THJ4 AF213884.3-201ENST00000563833 479 ntBASIC15.91■□□□□ 0.14
VPS13DQ5THJ4 CA15P2-201ENST00000611168 834 ntBASIC15.91■□□□□ 0.14
VPS13DQ5THJ4 MARCH2-201ENST00000215555 1376 ntAPPRIS P1 TSL 5 BASIC15.91■□□□□ 0.14
VPS13DQ5THJ4 AC116614.1-201ENST00000456949 539 ntTSL 2 BASIC15.9■□□□□ 0.14
VPS13DQ5THJ4 RASGEF1B-208ENST00000510780 539 ntTSL 3 BASIC15.9■□□□□ 0.14
VPS13DQ5THJ4 RASGEF1B-209ENST00000512343 498 ntTSL 3 BASIC15.9■□□□□ 0.14
VPS13DQ5THJ4 GATM-206ENST00000558336 1522 ntTSL 2 BASIC15.9■□□□□ 0.14
VPS13DQ5THJ4 AC011511.4-201ENST00000586529 1850 ntAPPRIS P1 TSL 5 BASIC15.9■□□□□ 0.14
VPS13DQ5THJ4 CEND1-201ENST00000330106 1649 ntAPPRIS P1 TSL 1 (best) BASIC15.9■□□□□ 0.14
VPS13DQ5THJ4 IKBKG-211ENST00000615874 1460 ntTSL 5 BASIC15.9■□□□□ 0.14
VPS13DQ5THJ4 IKBKG-215ENST00000619941 1463 ntTSL 5 BASIC15.9■□□□□ 0.14
VPS13DQ5THJ4 CROT-202ENST00000412227 1213 ntTSL 1 (best) BASIC15.9■□□□□ 0.14
VPS13DQ5THJ4 AC008105.3-201ENST00000586376 844 ntTSL 3 BASIC15.9■□□□□ 0.14
Retrieved 100 of 98,524 protein–RNA pairs in 16.7 ms