Protein–RNA interactions for Protein: P47902

CDX1, Homeobox protein CDX-1, humanhuman

Predicted RBP Predictions only

Length 265 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CDX1P47902 AC074183.2-201ENST00000623112 922 ntBASIC18.81■□□□□ 0.6
CDX1P47902 HTRA2-201ENST00000258080 2370 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
CDX1P47902 SSBP4-201ENST00000270061 1768 ntAPPRIS P3 TSL 1 (best) BASIC18.81■□□□□ 0.6
CDX1P47902 HMGA2-201ENST00000354636 1529 ntTSL 1 (best) BASIC18.8■□□□□ 0.6
CDX1P47902 NHLRC4-202ENST00000540585 2071 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
CDX1P47902 ANKRD20A11P-201ENST00000344693 1088 ntTSL 1 (best) BASIC18.8■□□□□ 0.6
CDX1P47902 IDNK-203ENST00000405990 629 ntTSL 2 BASIC18.8■□□□□ 0.6
CDX1P47902 PYY2-202ENST00000441253 1076 ntTSL 1 (best) BASIC18.8■□□□□ 0.6
CDX1P47902 AC148477.1-201ENST00000537720 476 ntTSL 3 BASIC18.8■□□□□ 0.6
CDX1P47902 LSR-202ENST00000354900 2105 ntAPPRIS ALT2 TSL 1 (best) BASIC18.8■□□□□ 0.6
CDX1P47902 AUTS2-203ENST00000406775 5950 ntAPPRIS ALT2 TSL 1 (best) BASIC18.8■□□□□ 0.6
CDX1P47902 HDGFL2-210ENST00000621835 2255 ntAPPRIS ALT2 TSL 1 (best) BASIC18.8■□□□□ 0.6
CDX1P47902 AL139125.2-201ENST00000623134 1869 ntBASIC18.8■□□□□ 0.6
CDX1P47902 ARX-201ENST00000379044 2876 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
CDX1P47902 SLC25A27-202ENST00000411689 2526 ntTSL 1 (best) BASIC18.79■□□□□ 0.6
CDX1P47902 IDI1-201ENST00000381344 2301 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
CDX1P47902 MAGI2-217ENST00000629359 6704 ntTSL 5 BASIC18.79■□□□□ 0.6
CDX1P47902 IQCJ-SCHIP1-201ENST00000412423 2067 ntAPPRIS ALT2 TSL 1 (best) BASIC18.79■□□□□ 0.6
CDX1P47902 AC139795.1-203ENST00000515045 853 ntTSL 2 BASIC18.79■□□□□ 0.6
CDX1P47902 ACOT1-202ENST00000557556 1271 ntTSL 1 (best) BASIC18.79■□□□□ 0.6
CDX1P47902 AC116025.2-201ENST00000576632 443 ntTSL 3 BASIC18.79■□□□□ 0.6
CDX1P47902 LINC01233-202ENST00000598832 568 ntTSL 2 BASIC18.79■□□□□ 0.6
CDX1P47902 RANBP10-206ENST00000602677 2374 ntTSL 5 BASIC18.79■□□□□ 0.6
CDX1P47902 MBLAC1-201ENST00000398075 1502 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
CDX1P47902 CDR2-201ENST00000268383 2702 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
CDX1P47902 TBL2-222ENST00000610724 2165 ntTSL 5 BASIC18.78■□□□□ 0.6
CDX1P47902 SHISA8-202ENST00000621082 1405 ntAPPRIS P2 TSL 5 BASIC18.78■□□□□ 0.6
CDX1P47902 KRT18P10-201ENST00000388836 1287 ntBASIC18.78■□□□□ 0.6
CDX1P47902 TBX2-AS1-203ENST00000590421 861 ntTSL 2 BASIC18.78■□□□□ 0.6
CDX1P47902 PPP2R2D-201ENST00000455566 5738 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
CDX1P47902 ITGB3-202ENST00000571680 1668 ntTSL 1 (best) BASIC18.78■□□□□ 0.6
CDX1P47902 CCDC96-201ENST00000310085 2091 ntAPPRIS P1 BASIC18.78■□□□□ 0.6
CDX1P47902 AKT1S1-201ENST00000344175 1760 ntAPPRIS P1 TSL 3 BASIC18.78■□□□□ 0.6
CDX1P47902 MAGI2-201ENST00000354212 6880 ntAPPRIS P3 TSL 1 (best) BASIC18.78■□□□□ 0.6
CDX1P47902 AFDN-AS1-201ENST00000359760 2238 ntTSL 1 (best) BASIC18.77■□□□□ 0.6
CDX1P47902 ZNF598-202ENST00000562103 2717 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
CDX1P47902 WTAP-207ENST00000631126 1430 ntTSL 3 BASIC18.77■□□□□ 0.6
CDX1P47902 C17orf49-201ENST00000439424 850 ntAPPRIS P3 TSL 1 (best) BASIC18.77■□□□□ 0.6
CDX1P47902 BHLHE23-202ENST00000612929 1109 ntBASIC18.77■□□□□ 0.6
CDX1P47902 CACNG8-201ENST00000270458 8747 ntAPPRIS ALT2 TSL 1 (best) BASIC18.77■□□□□ 0.6
CDX1P47902 FAM124A-201ENST00000280057 2104 ntTSL 2 BASIC18.77■□□□□ 0.6
CDX1P47902 OSCAR-202ENST00000351806 1375 ntAPPRIS ALT2 TSL 1 (best) BASIC18.77■□□□□ 0.6
CDX1P47902 USF3-203ENST00000491165 2133 ntAPPRIS ALT2 TSL 1 (best) BASIC18.77■□□□□ 0.6
CDX1P47902 ZAR1-201ENST00000327939 1460 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.59
CDX1P47902 TMCO6-201ENST00000252100 1834 ntTSL 1 (best) BASIC18.77■□□□□ 0.59
CDX1P47902 GSK3A-201ENST00000222330 2188 ntAPPRIS P2 TSL 1 (best) BASIC18.76■□□□□ 0.59
CDX1P47902 NRG2-203ENST00000340391 1944 ntTSL 5 BASIC18.76■□□□□ 0.59
CDX1P47902 GNB1-209ENST00000610897 3145 ntAPPRIS P1 TSL 5 BASIC18.76■□□□□ 0.59
CDX1P47902 NECAB2-201ENST00000305202 1608 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
CDX1P47902 AC139795.1-202ENST00000500444 432 ntBASIC18.76■□□□□ 0.59
CDX1P47902 NKX2-5-204ENST00000521848 1027 ntTSL 2 BASIC18.76■□□□□ 0.59
CDX1P47902 ILDR2-208ENST00000529387 1238 ntTSL 5 BASIC18.76■□□□□ 0.59
CDX1P47902 AC064853.2-201ENST00000641246 144 ntAPPRIS P1 BASIC18.76■□□□□ 0.59
CDX1P47902 SLC30A3-201ENST00000233535 2260 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
CDX1P47902 SPATA2L-201ENST00000289805 2335 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
CDX1P47902 PPP1R3F-205ENST00000495799 1537 ntTSL 1 (best) BASIC18.75■□□□□ 0.59
CDX1P47902 AL354928.1-201ENST00000438380 617 ntTSL 2 BASIC18.75■□□□□ 0.59
CDX1P47902 SMKR1-201ENST00000462322 1035 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
CDX1P47902 GAL3ST2-201ENST00000192314 1370 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
CDX1P47902 AC142381.3-201ENST00000568208 1670 ntBASIC18.75■□□□□ 0.59
CDX1P47902 SLC25A10-202ENST00000350690 1885 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
CDX1P47902 STEAP2-204ENST00000394626 2456 ntTSL 2 BASIC18.75■□□□□ 0.59
CDX1P47902 GSN-204ENST00000373818 2657 ntTSL 1 (best) BASIC18.75■□□□□ 0.59
CDX1P47902 ZNF767P-202ENST00000472212 2100 ntTSL 1 (best) BASIC18.74■□□□□ 0.59
CDX1P47902 TMEM256-PLSCR3-204ENST00000573331 2557 ntAPPRIS P5 TSL 2 BASIC18.74■□□□□ 0.59
CDX1P47902 SLC30A2-201ENST00000374276 2494 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
CDX1P47902 BICDL2-203ENST00000572449 1984 ntAPPRIS P1 TSL 5 BASIC18.74■□□□□ 0.59
CDX1P47902 INPPL1-201ENST00000298229 4733 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
CDX1P47902 SEC11C-204ENST00000587834 1202 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
CDX1P47902 TCEA1-213ENST00000640041 1171 ntTSL 5 BASIC18.74■□□□□ 0.59
CDX1P47902 CCNYL1-202ENST00000339882 2619 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
CDX1P47902 HYAL2-207ENST00000442581 2318 ntAPPRIS P1 TSL 2 BASIC18.74■□□□□ 0.59
CDX1P47902 PVT1-212ENST00000521951 1535 ntTSL 1 (best) BASIC18.74■□□□□ 0.59
CDX1P47902 LDB1-201ENST00000361198 2285 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
CDX1P47902 KCNG1-201ENST00000371571 2211 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
CDX1P47902 SLC25A29-202ENST00000392908 2242 ntTSL 2 BASIC18.73■□□□□ 0.59
CDX1P47902 CTDSPL-206ENST00000443503 4640 ntAPPRIS ALT1 TSL 1 (best) BASIC18.73■□□□□ 0.59
CDX1P47902 KRTAP5-5-201ENST00000399676 933 ntAPPRIS P1 BASIC18.73■□□□□ 0.59
CDX1P47902 AC009511.2-201ENST00000545904 679 ntTSL 2 BASIC18.73■□□□□ 0.59
CDX1P47902 TRIM3-214ENST00000536344 2704 ntTSL 2 BASIC18.73■□□□□ 0.59
CDX1P47902 CTF1-202ENST00000395019 1617 ntAPPRIS ALT1 TSL 1 (best) BASIC18.73■□□□□ 0.59
CDX1P47902 APBA3-201ENST00000316757 2075 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
CDX1P47902 IRX2-201ENST00000302057 2456 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
CDX1P47902 CAPZB-203ENST00000375142 1686 ntAPPRIS ALT1 TSL 5 BASIC18.73■□□□□ 0.59
CDX1P47902 PLEKHA8-203ENST00000396259 2840 ntTSL 2 BASIC18.72■□□□□ 0.59
CDX1P47902 PFDN2-201ENST00000368010 677 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
CDX1P47902 PROSER2-202ENST00000379200 1232 ntAPPRIS ALT2 BASIC18.72■□□□□ 0.59
CDX1P47902 AC016910.1-201ENST00000422799 1046 ntTSL 1 (best) BASIC18.72■□□□□ 0.59
CDX1P47902 TMEM191C-206ENST00000432134 1129 ntAPPRIS ALT2 TSL 5 BASIC18.72■□□□□ 0.59
CDX1P47902 HSBP1L1-201ENST00000451882 771 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
CDX1P47902 HERC2P9-201ENST00000507787 1023 ntTSL 1 (best) BASIC18.72■□□□□ 0.59
CDX1P47902 HEXDC-202ENST00000337014 2285 ntTSL 1 (best) BASIC18.72■□□□□ 0.59
CDX1P47902 ANKRD9-204ENST00000559651 1444 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
CDX1P47902 MAGED2-206ENST00000375068 2189 ntAPPRIS P2 TSL 1 (best) BASIC18.72■□□□□ 0.59
CDX1P47902 LRFN4-202ENST00000393952 1550 ntTSL 5 BASIC18.72■□□□□ 0.59
CDX1P47902 RCCD1-206ENST00000556618 1556 ntAPPRIS P2 TSL 5 BASIC18.72■□□□□ 0.59
CDX1P47902 PCYT2-204ENST00000570388 1474 ntTSL 2 BASIC18.71■□□□□ 0.59
CDX1P47902 U2AF1-204ENST00000459639 1675 ntTSL 1 (best) BASIC18.71■□□□□ 0.59
CDX1P47902 U2AF1L5-204ENST00000623375 1675 ntTSL 1 (best) BASIC18.71■□□□□ 0.59
CDX1P47902 C9orf147-202ENST00000457681 561 ntTSL 2 BASIC18.71■□□□□ 0.59
Retrieved 100 of 98,524 protein–RNA pairs in 14.4 ms