Protein–RNA interactions for Protein: P43378

PTPN9, Tyrosine-protein phosphatase non-receptor type 9, humanhuman

Predictions only

Length 593 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN9P43378 EGR4-201ENST00000436467 2377 ntAPPRIS ALT2 TSL 1 (best) BASIC24.38■■□□□ 1.49
PTPN9P43378 MOB4-204ENST00000409360 1447 ntTSL 5 BASIC24.38■■□□□ 1.49
PTPN9P43378 QDPR-202ENST00000428702 1278 ntTSL 2 BASIC24.38■■□□□ 1.49
PTPN9P43378 MIR4508-201ENST00000584178 70 ntBASIC24.38■■□□□ 1.49
PTPN9P43378 DAZAP1-205ENST00000587079 2086 ntAPPRIS ALT1 TSL 5 BASIC24.38■■□□□ 1.49
PTPN9P43378 TSEN34-201ENST00000302937 2294 ntAPPRIS P1 TSL 1 (best) BASIC24.37■■□□□ 1.49
PTPN9P43378 SLIT1-203ENST00000371041 1695 ntTSL 2 BASIC24.37■■□□□ 1.49
PTPN9P43378 NUDT18-202ENST00000613958 1754 ntTSL 2 BASIC24.37■■□□□ 1.49
PTPN9P43378 SKOR2-203ENST00000620245 3048 ntAPPRIS ALT2 TSL 5 BASIC24.37■■□□□ 1.49
PTPN9P43378 BDH1-207ENST00000441275 1605 ntTSL 5 BASIC24.37■■□□□ 1.49
PTPN9P43378 KAT5-208ENST00000530446 1697 ntTSL 1 (best) BASIC24.37■■□□□ 1.49
PTPN9P43378 AZIN2-201ENST00000294517 2182 ntAPPRIS P1 TSL 1 (best) BASIC24.36■■□□□ 1.49
PTPN9P43378 PFN2-210ENST00000481767 1620 ntTSL 2 BASIC24.36■■□□□ 1.49
PTPN9P43378 KCTD5-201ENST00000301738 2482 ntAPPRIS P1 TSL 1 (best) BASIC24.36■■□□□ 1.49
PTPN9P43378 ZNF503-AS2-201ENST00000425916 2026 ntTSL 1 (best) BASIC24.36■■□□□ 1.49
PTPN9P43378 NAXE-203ENST00000368235 1125 ntAPPRIS P1 TSL 1 (best) BASIC24.36■■□□□ 1.49
PTPN9P43378 NEURL1B-203ENST00000522853 1263 ntTSL 1 (best) BASIC24.36■■□□□ 1.49
PTPN9P43378 FAM173A-202ENST00000564000 1088 ntAPPRIS ALT2 TSL 2 BASIC24.36■■□□□ 1.49
PTPN9P43378 MMP25-AS1-209ENST00000576250 779 ntTSL 5 BASIC24.36■■□□□ 1.49
PTPN9P43378 R3HCC1-202ENST00000411463 1467 ntAPPRIS P5 TSL 5 BASIC24.36■■□□□ 1.49
PTPN9P43378 SYNGR3-201ENST00000248121 2051 ntAPPRIS P1 TSL 1 (best) BASIC24.36■■□□□ 1.49
PTPN9P43378 KLF15-201ENST00000296233 2574 ntAPPRIS P1 TSL 1 (best) BASIC24.36■■□□□ 1.49
PTPN9P43378 CITED4-201ENST00000372638 1316 ntAPPRIS P1 BASIC24.35■■□□□ 1.49
PTPN9P43378 ACOT1-202ENST00000557556 1271 ntTSL 1 (best) BASIC24.35■■□□□ 1.49
PTPN9P43378 MSX2-201ENST00000239243 2241 ntAPPRIS P1 TSL 1 (best) BASIC24.35■■□□□ 1.49
PTPN9P43378 NFKBIE-201ENST00000275015 2581 ntTSL 1 (best) BASIC24.35■■□□□ 1.49
PTPN9P43378 HLA-L-211ENST00000482052 1765 ntBASIC24.34■■□□□ 1.49
PTPN9P43378 MYO10-205ENST00000507288 1677 ntTSL 1 (best) BASIC24.34■■□□□ 1.49
PTPN9P43378 VDAC2-203ENST00000332211 1557 ntAPPRIS P1 TSL 1 (best) BASIC24.34■■□□□ 1.49
PTPN9P43378 PTRH1-205ENST00000423807 1570 ntTSL 2 BASIC24.34■■□□□ 1.49
PTPN9P43378 PREB-202ENST00000406567 1910 ntTSL 5 BASIC24.34■■□□□ 1.49
PTPN9P43378 CD63-201ENST00000257857 1070 ntAPPRIS P1 TSL 1 (best) BASIC24.34■■□□□ 1.49
PTPN9P43378 AC103834.1-201ENST00000520383 144 ntBASIC24.34■■□□□ 1.49
PTPN9P43378 PKNOX2-AS1-201ENST00000532316 586 ntTSL 3 BASIC24.34■■□□□ 1.49
PTPN9P43378 HOXB3-202ENST00000460160 1525 ntTSL 5 BASIC24.34■■□□□ 1.49
PTPN9P43378 HSPBP1-201ENST00000255631 1768 ntAPPRIS P1 TSL 1 (best) BASIC24.34■■□□□ 1.49
PTPN9P43378 MROH6-202ENST00000524906 1794 ntAPPRIS ALT2 TSL 3 BASIC24.34■■□□□ 1.49
PTPN9P43378 CNN3-202ENST00000394202 1974 ntTSL 2 BASIC24.33■■□□□ 1.49
PTPN9P43378 SLBP-206ENST00000489418 1977 ntAPPRIS P2 TSL 1 (best) BASIC24.33■■□□□ 1.49
PTPN9P43378 KRT18P24-201ENST00000344739 1156 ntBASIC24.33■■□□□ 1.49
PTPN9P43378 ZNF606-203ENST00000547121 1196 ntTSL 2 BASIC24.33■■□□□ 1.49
PTPN9P43378 GJC1-209ENST00000592524 1837 ntAPPRIS P1 TSL 2 BASIC24.33■■□□□ 1.48
PTPN9P43378 CIRBP-216ENST00000588090 1459 ntAPPRIS P3 TSL 3 BASIC24.32■■□□□ 1.48
PTPN9P43378 SLC22A31-206ENST00000614943 1860 ntTSL 5 BASIC24.32■■□□□ 1.48
PTPN9P43378 DEAF1-201ENST00000382409 2500 ntAPPRIS P1 TSL 1 (best) BASIC24.32■■□□□ 1.48
PTPN9P43378 R3HDM4-203ENST00000587975 1765 ntTSL 3 BASIC24.32■■□□□ 1.48
PTPN9P43378 TSEN54-201ENST00000333213 1944 ntAPPRIS P1 TSL 1 (best) BASIC24.32■■□□□ 1.48
PTPN9P43378 METTL24-201ENST00000338882 1119 ntAPPRIS P1 TSL 5 BASIC24.32■■□□□ 1.48
PTPN9P43378 KRTAP5-5-201ENST00000399676 933 ntAPPRIS P1 BASIC24.32■■□□□ 1.48
PTPN9P43378 FAM120C-203ENST00000477084 1140 ntAPPRIS ALT2 TSL 1 (best) BASIC24.32■■□□□ 1.48
PTPN9P43378 TMPO-AS1-201ENST00000546421 738 ntTSL 5 BASIC24.32■■□□□ 1.48
PTPN9P43378 GP1BB-201ENST00000366425 1553 ntAPPRIS P1 TSL 1 (best) BASIC24.32■■□□□ 1.48
PTPN9P43378 OTUD5-203ENST00000396743 2682 ntAPPRIS ALT1 TSL 1 (best) BASIC24.31■■□□□ 1.48
PTPN9P43378 ZC3H14-202ENST00000302216 2560 ntTSL 1 (best) BASIC24.31■■□□□ 1.48
PTPN9P43378 AC078883.1-201ENST00000442417 950 ntTSL 3 BASIC24.31■■□□□ 1.48
PTPN9P43378 AC120024.1-201ENST00000562672 995 ntBASIC24.31■■□□□ 1.48
PTPN9P43378 AC010913.1-201ENST00000608612 420 ntTSL 2 BASIC24.31■■□□□ 1.48
PTPN9P43378 PCSK6-216ENST00000615296 2921 ntTSL 5 BASIC24.31■■□□□ 1.48
PTPN9P43378 PINK1-201ENST00000321556 2660 ntAPPRIS P1 TSL 1 (best) BASIC24.31■■□□□ 1.48
PTPN9P43378 PLEKHA8-201ENST00000258679 2293 ntTSL 1 (best) BASIC24.31■■□□□ 1.48
PTPN9P43378 LINC01124-201ENST00000409786 2117 ntBASIC24.31■■□□□ 1.48
PTPN9P43378 MATK-204ENST00000585778 1994 ntAPPRIS ALT2 TSL 1 (best) BASIC24.31■■□□□ 1.48
PTPN9P43378 PLEKHA8-202ENST00000396257 1907 ntTSL 1 (best) BASIC24.3■■□□□ 1.48
PTPN9P43378 CDH23-206ENST00000398842 1759 ntTSL 5 BASIC24.3■■□□□ 1.48
PTPN9P43378 AC093390.2-201ENST00000638628 1007 ntTSL 5 BASIC24.3■■□□□ 1.48
PTPN9P43378 TMEM185A-208ENST00000611119 2662 ntTSL 2 BASIC24.3■■□□□ 1.48
PTPN9P43378 GAK-223ENST00000628912 497 ntTSL 5 BASIC24.29■■□□□ 1.48
PTPN9P43378 KRT10-201ENST00000269576 2124 ntAPPRIS P1 TSL 1 (best) BASIC24.29■■□□□ 1.48
PTPN9P43378 ADIPOR1-201ENST00000340990 2177 ntAPPRIS P1 TSL 1 (best) BASIC24.29■■□□□ 1.48
PTPN9P43378 AC141586.4-201ENST00000624558 1573 ntBASIC24.29■■□□□ 1.48
PTPN9P43378 LINC00543-201ENST00000567234 1845 ntBASIC24.28■■□□□ 1.48
PTPN9P43378 TXNRD2-201ENST00000334363 1893 ntTSL 1 (best) BASIC24.28■■□□□ 1.48
PTPN9P43378 DOK3-205ENST00000501403 1872 ntAPPRIS P1 TSL 5 BASIC24.28■■□□□ 1.48
PTPN9P43378 GADD45A-202ENST00000370986 1496 ntAPPRIS P1 TSL 1 (best) BASIC24.28■■□□□ 1.48
PTPN9P43378 CDKN2A-214ENST00000579755 1283 ntAPPRIS P1 TSL 1 (best) BASIC24.28■■□□□ 1.48
PTPN9P43378 TSPAN10-204ENST00000611590 1068 ntAPPRIS ALT2 TSL 1 (best) BASIC24.28■■□□□ 1.48
PTPN9P43378 ZNRF1-201ENST00000320619 2479 ntTSL 1 (best) BASIC24.28■■□□□ 1.48
PTPN9P43378 KLC3-201ENST00000391946 1780 ntAPPRIS P2 TSL 1 (best) BASIC24.28■■□□□ 1.48
PTPN9P43378 MAGI2-211ENST00000535697 6146 ntTSL 5 BASIC24.28■■□□□ 1.48
PTPN9P43378 CSNK1G3-207ENST00000512718 1569 ntTSL 2 BASIC24.28■■□□□ 1.48
PTPN9P43378 ESR2-202ENST00000341099 2060 ntAPPRIS P1 TSL 1 (best) BASIC24.28■■□□□ 1.48
PTPN9P43378 SDF4-202ENST00000360001 1956 ntAPPRIS ALT2 TSL 1 (best) BASIC24.27■■□□□ 1.48
PTPN9P43378 GOLGA7-201ENST00000357743 2027 ntAPPRIS P1 TSL 1 (best) BASIC24.27■■□□□ 1.48
PTPN9P43378 FUT11-201ENST00000372841 2056 ntAPPRIS P1 TSL 1 (best) BASIC24.27■■□□□ 1.48
PTPN9P43378 CLIC3-203ENST00000494426 1017 ntAPPRIS P1 TSL 1 (best) BASIC24.27■■□□□ 1.48
PTPN9P43378 AC053527.1-201ENST00000502790 685 ntTSL 3 BASIC24.27■■□□□ 1.48
PTPN9P43378 THA1P-201ENST00000590384 1145 ntBASIC24.27■■□□□ 1.48
PTPN9P43378 AL121906.1-201ENST00000606866 440 ntTSL 3 BASIC24.27■■□□□ 1.48
PTPN9P43378 KRT8P33-201ENST00000508125 1423 ntBASIC24.27■■□□□ 1.48
PTPN9P43378 FAM124A-204ENST00000615498 2383 ntTSL 1 (best) BASIC24.27■■□□□ 1.48
PTPN9P43378 CSNK1E-203ENST00000396832 2791 ntAPPRIS P1 TSL 1 (best) BASIC24.26■■□□□ 1.47
PTPN9P43378 CCM2L-201ENST00000262659 2523 ntAPPRIS P1 TSL 1 (best) BASIC24.26■■□□□ 1.47
PTPN9P43378 TMEM202-AS1-202ENST00000565181 2325 ntBASIC24.26■■□□□ 1.47
PTPN9P43378 YBX1P4-201ENST00000392794 808 ntBASIC24.26■■□□□ 1.47
PTPN9P43378 NDUFA10-204ENST00000407129 699 ntTSL 1 (best) BASIC24.26■■□□□ 1.47
PTPN9P43378 AC009531.1-201ENST00000442323 580 ntTSL 4 BASIC24.26■■□□□ 1.47
PTPN9P43378 KLHDC9-203ENST00000392192 1333 ntTSL 1 (best) BASIC24.26■■□□□ 1.47
PTPN9P43378 SEPT2-205ENST00000401990 1734 ntTSL 1 (best) BASIC24.26■■□□□ 1.47
PTPN9P43378 DCAF15-201ENST00000254337 2278 ntAPPRIS P1 TSL 1 (best) BASIC24.26■■□□□ 1.47
PTPN9P43378 AP000802.1-201ENST00000500537 1934 ntTSL 1 (best) BASIC24.25■■□□□ 1.47
Retrieved 100 of 98,524 protein–RNA pairs in 16 ms