Protein–RNA interactions for Protein: P27658

COL8A1, Collagen alpha-1(VIII) chain, humanhuman

Predictions only

Length 744 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL8A1P27658 CYB561D2-205ENST00000425346 1319 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
COL8A1P27658 CHKA-202ENST00000356135 1755 ntAPPRIS ALT2 TSL 1 (best) BASIC20.49■□□□□ 0.87
COL8A1P27658 FZD2-201ENST00000315323 2112 ntAPPRIS P1 BASIC20.49■□□□□ 0.87
COL8A1P27658 CD47-202ENST00000361309 1285 ntTSL 1 (best) BASIC20.49■□□□□ 0.87
COL8A1P27658 CTAG2-202ENST00000369585 748 ntAPPRIS P1 TSL 1 (best) BASIC20.49■□□□□ 0.87
COL8A1P27658 ZIC2-201ENST00000376335 2983 ntAPPRIS P1 TSL 1 (best) BASIC20.49■□□□□ 0.87
COL8A1P27658 YJEFN3-201ENST00000436027 878 ntAPPRIS P1 TSL 1 (best) BASIC20.49■□□□□ 0.87
COL8A1P27658 EPB41L4B-202ENST00000374566 5800 ntAPPRIS P4 TSL 1 (best) BASIC20.49■□□□□ 0.87
COL8A1P27658 POLE2-201ENST00000216367 1776 ntAPPRIS P1 TSL 1 (best) BASIC20.49■□□□□ 0.87
COL8A1P27658 RAB20-201ENST00000267328 1518 ntAPPRIS P1 TSL 1 (best) BASIC20.48■□□□□ 0.87
COL8A1P27658 FPGS-202ENST00000373228 1383 ntTSL 5 BASIC20.48■□□□□ 0.87
COL8A1P27658 LRRC75A-203ENST00000470794 1390 ntAPPRIS ALT2 TSL 1 (best) BASIC20.48■□□□□ 0.87
COL8A1P27658 ID1-201ENST00000376105 1233 ntBASIC20.48■□□□□ 0.87
COL8A1P27658 NGEF-203ENST00000409079 1022 ntTSL 1 (best) BASIC20.48■□□□□ 0.87
COL8A1P27658 AC116614.1-201ENST00000456949 539 ntTSL 2 BASIC20.48■□□□□ 0.87
COL8A1P27658 SCO2-204ENST00000543927 1051 ntAPPRIS P1 TSL 2 BASIC20.48■□□□□ 0.87
COL8A1P27658 CCDC189-211ENST00000545825 1046 ntTSL 1 (best) BASIC20.48■□□□□ 0.87
COL8A1P27658 AC008764.7-201ENST00000593779 1081 ntBASIC20.48■□□□□ 0.87
COL8A1P27658 AL133516.1-201ENST00000633012 540 ntTSL 5 BASIC20.48■□□□□ 0.87
COL8A1P27658 BX255925.1-201ENST00000566954 1854 ntBASIC20.47■□□□□ 0.87
COL8A1P27658 SYT6-210ENST00000641643 1587 ntBASIC20.47■□□□□ 0.87
COL8A1P27658 TSPAN4-203ENST00000397397 1423 ntAPPRIS P1 TSL 1 (best) BASIC20.47■□□□□ 0.87
COL8A1P27658 CTNNAL1-202ENST00000374593 761 ntTSL 3 BASIC20.47■□□□□ 0.87
COL8A1P27658 PTMA-205ENST00000410064 814 ntTSL 2 BASIC20.47■□□□□ 0.87
COL8A1P27658 SP2-202ENST00000613139 908 ntTSL 5 BASIC20.47■□□□□ 0.87
COL8A1P27658 AC243829.1-202ENST00000618848 486 ntTSL 3 BASIC20.47■□□□□ 0.87
COL8A1P27658 AC139426.1-201ENST00000568218 2529 ntBASIC20.47■□□□□ 0.87
COL8A1P27658 PHF11-202ENST00000378319 1359 ntAPPRIS P3 TSL 1 (best) BASIC20.46■□□□□ 0.87
COL8A1P27658 GMPPB-202ENST00000308388 1582 ntAPPRIS P1 TSL 1 (best) BASIC20.46■□□□□ 0.87
COL8A1P27658 AGFG1-205ENST00000409979 2089 ntAPPRIS ALT1 TSL 5 BASIC20.46■□□□□ 0.87
COL8A1P27658 TMEM61-201ENST00000371268 1097 ntAPPRIS P1 TSL 1 (best) BASIC20.46■□□□□ 0.87
COL8A1P27658 RPLP2-207ENST00000530797 637 ntAPPRIS P1 TSL 1 (best) BASIC20.46■□□□□ 0.87
COL8A1P27658 RHOF-204ENST00000537265 699 ntTSL 2 BASIC20.46■□□□□ 0.87
COL8A1P27658 DUX4L19-201ENST00000557448 1267 ntBASIC20.46■□□□□ 0.87
COL8A1P27658 AC092437.1-201ENST00000624794 1048 ntBASIC20.46■□□□□ 0.87
COL8A1P27658 GIPC1-203ENST00000393033 1926 ntAPPRIS P1 TSL 1 (best) BASIC20.46■□□□□ 0.87
COL8A1P27658 ZNF74-204ENST00000405993 1839 ntAPPRIS ALT2 TSL 5 BASIC20.46■□□□□ 0.87
COL8A1P27658 BCL2L12-201ENST00000246784 990 ntAPPRIS ALT2 TSL 1 (best) BASIC20.45■□□□□ 0.86
COL8A1P27658 VAMP2-204ENST00000488857 874 ntAPPRIS ALT1 TSL 3 BASIC20.45■□□□□ 0.86
COL8A1P27658 ST7L-206ENST00000369666 1815 ntTSL 1 (best) BASIC20.45■□□□□ 0.86
COL8A1P27658 STMN4-201ENST00000265770 1250 ntAPPRIS P1 TSL 1 (best) BASIC20.44■□□□□ 0.86
COL8A1P27658 HACD1-201ENST00000326961 773 ntTSL 2 BASIC20.44■□□□□ 0.86
COL8A1P27658 AC004911.1-201ENST00000416316 871 ntBASIC20.44■□□□□ 0.86
COL8A1P27658 HERC2P4-206ENST00000568097 1062 ntTSL 5 BASIC20.44■□□□□ 0.86
COL8A1P27658 ARHGDIA-217ENST00000584461 886 ntTSL 2 BASIC20.44■□□□□ 0.86
COL8A1P27658 KAT5-208ENST00000530446 1697 ntTSL 1 (best) BASIC20.44■□□□□ 0.86
COL8A1P27658 KCTD17-202ENST00000403888 1763 ntAPPRIS ALT2 TSL 1 (best) BASIC20.44■□□□□ 0.86
COL8A1P27658 CCDC61-204ENST00000595358 1817 ntAPPRIS P2 TSL 5 BASIC20.43■□□□□ 0.86
COL8A1P27658 RAD21-AS1-201ENST00000521487 2010 ntTSL 1 (best) BASIC20.43■□□□□ 0.86
COL8A1P27658 SYT7-202ENST00000535826 1621 ntTSL 5 BASIC20.43■□□□□ 0.86
COL8A1P27658 TSPY4-201ENST00000383008 1143 ntAPPRIS ALT2 TSL 5 BASIC20.43■□□□□ 0.86
COL8A1P27658 SPOCK2-203ENST00000412663 1284 ntTSL 5 BASIC20.43■□□□□ 0.86
COL8A1P27658 SLC39A3-203ENST00000545664 1219 ntTSL 2 BASIC20.43■□□□□ 0.86
COL8A1P27658 NEDD4L-225ENST00000589054 1033 ntTSL 3 BASIC20.43■□□□□ 0.86
COL8A1P27658 ZNF264-206ENST00000600531 774 ntTSL 2 BASIC20.43■□□□□ 0.86
COL8A1P27658 ARPC5L-201ENST00000259477 1325 ntAPPRIS P1 TSL 1 (best) BASIC20.43■□□□□ 0.86
COL8A1P27658 KLC3-201ENST00000391946 1780 ntAPPRIS P2 TSL 1 (best) BASIC20.43■□□□□ 0.86
COL8A1P27658 SPI1-202ENST00000378538 1403 ntAPPRIS P3 TSL 1 (best) BASIC20.43■□□□□ 0.86
COL8A1P27658 AC034268.1-201ENST00000441047 882 ntBASIC20.42■□□□□ 0.86
COL8A1P27658 SF1-220ENST00000626028 704 ntTSL 2 BASIC20.42■□□□□ 0.86
COL8A1P27658 TSGA13-204ENST00000456951 2046 ntAPPRIS P2 TSL 2 BASIC20.42■□□□□ 0.86
COL8A1P27658 TSPAN2-201ENST00000369515 793 ntTSL 3 BASIC20.41■□□□□ 0.86
COL8A1P27658 PLPP5-201ENST00000419686 794 ntTSL 2 BASIC20.41■□□□□ 0.86
COL8A1P27658 KRT18P5-201ENST00000436075 1291 ntBASIC20.41■□□□□ 0.86
COL8A1P27658 AC027682.1-201ENST00000562846 899 ntBASIC20.41■□□□□ 0.86
COL8A1P27658 GNAO1-211ENST00000570235 568 ntTSL 2 BASIC20.41■□□□□ 0.86
COL8A1P27658 CENPH-201ENST00000283006 1389 ntAPPRIS P1 TSL 1 (best) BASIC20.41■□□□□ 0.86
COL8A1P27658 HNRNPD-203ENST00000353341 1585 ntAPPRIS ALT1 TSL 1 (best) BASIC20.41■□□□□ 0.86
COL8A1P27658 SLC35A2-209ENST00000452555 1563 ntTSL 2 BASIC20.41■□□□□ 0.86
COL8A1P27658 ANKRD16-202ENST00000380092 1646 ntAPPRIS P1 TSL 1 (best) BASIC20.41■□□□□ 0.86
COL8A1P27658 CRLF1-201ENST00000392386 1792 ntAPPRIS P1 TSL 1 (best) BASIC20.41■□□□□ 0.86
COL8A1P27658 MEN1-204ENST00000377313 1871 ntAPPRIS P3 TSL 2 BASIC20.41■□□□□ 0.86
COL8A1P27658 COMMD5-201ENST00000305103 1373 ntAPPRIS P1 TSL 1 (best) BASIC20.4■□□□□ 0.86
COL8A1P27658 VWA1-201ENST00000338660 2147 ntTSL 2 BASIC20.4■□□□□ 0.86
COL8A1P27658 PYGO2-201ENST00000368456 1306 ntTSL 2 BASIC20.4■□□□□ 0.86
COL8A1P27658 PLEKHO1-202ENST00000369126 1809 ntTSL 1 (best) BASIC20.4■□□□□ 0.86
COL8A1P27658 PPA1-202ENST00000373232 1295 ntAPPRIS P1 TSL 1 (best) BASIC20.4■□□□□ 0.86
COL8A1P27658 PCK2-202ENST00000396973 1830 ntTSL 1 (best) BASIC20.4■□□□□ 0.86
COL8A1P27658 KRTAP5-2-201ENST00000412090 1118 ntAPPRIS P1 BASIC20.4■□□□□ 0.86
COL8A1P27658 AC099791.1-201ENST00000416440 715 ntBASIC20.4■□□□□ 0.86
COL8A1P27658 AL590128.2-201ENST00000442889 415 ntTSL 3 BASIC20.4■□□□□ 0.86
COL8A1P27658 AC068580.1-201ENST00000446489 252 ntTSL 3 BASIC20.4■□□□□ 0.86
COL8A1P27658 MEIS1-AS3-201ENST00000454167 707 ntTSL 4 BASIC20.4■□□□□ 0.86
COL8A1P27658 GATA2-AS1-201ENST00000464242 1163 ntTSL 2 BASIC20.4■□□□□ 0.86
COL8A1P27658 AC108002.2-201ENST00000519782 340 ntTSL 4 BASIC20.4■□□□□ 0.86
COL8A1P27658 LINC01942-201ENST00000521373 513 ntTSL 4 BASIC20.4■□□□□ 0.86
COL8A1P27658 IL15RA-214ENST00000525219 1850 ntAPPRIS ALT2 TSL 1 (best) BASIC20.4■□□□□ 0.86
COL8A1P27658 C1QTNF5-203ENST00000530681 1046 ntAPPRIS P1 TSL 1 (best) BASIC20.4■□□□□ 0.86
COL8A1P27658 SIRT3-215ENST00000532956 1235 ntTSL 2 BASIC20.4■□□□□ 0.86
COL8A1P27658 SNAI3-AS1-204ENST00000567997 2048 ntBASIC20.4■□□□□ 0.86
COL8A1P27658 AC104564.5-201ENST00000584986 278 ntTSL 3 BASIC20.4■□□□□ 0.86
COL8A1P27658 SLC35A2-212ENST00000634665 486 ntTSL 4 BASIC20.4■□□□□ 0.86
COL8A1P27658 REST-212ENST00000640343 1352 ntTSL 1 (best) BASIC20.4■□□□□ 0.86
COL8A1P27658 SPI1-201ENST00000227163 1168 ntAPPRIS ALT1 TSL 2 BASIC20.39■□□□□ 0.85
COL8A1P27658 GDNF-203ENST00000381826 778 ntTSL 1 (best) BASIC20.39■□□□□ 0.85
COL8A1P27658 SERBP1P1-201ENST00000396021 1160 ntBASIC20.39■□□□□ 0.85
COL8A1P27658 GRPEL2-202ENST00000416916 1006 ntTSL 2 BASIC20.39■□□□□ 0.85
COL8A1P27658 GDNF-204ENST00000427982 856 ntTSL 1 (best) BASIC20.39■□□□□ 0.85
COL8A1P27658 SLC47A1P1-202ENST00000449666 945 ntBASIC20.39■□□□□ 0.85
COL8A1P27658 SSSCA1-AS1-201ENST00000567594 614 ntBASIC20.39■□□□□ 0.85
Retrieved 100 of 98,524 protein–RNA pairs in 13.8 ms