Protein–RNA interactions for Protein: P00558

PGK1, Phosphoglycerate kinase 1, humanhuman

Predictions only

Length 417 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PGK1P00558 COMMD5-201ENST00000305103 1373 ntAPPRIS P1 TSL 1 (best) BASIC26.27■■□□□ 1.8
PGK1P00558 ZNF821-201ENST00000313565 1874 ntTSL 1 (best) BASIC26.27■■□□□ 1.8
PGK1P00558 C2CD4D-201ENST00000454109 1757 ntAPPRIS P1 TSL 2 BASIC26.26■■□□□ 1.79
PGK1P00558 CDKN2D-201ENST00000335766 1086 ntAPPRIS P1 TSL 1 (best) BASIC26.26■■□□□ 1.79
PGK1P00558 NOX4-204ENST00000393282 560 ntTSL 1 (best) BASIC26.26■■□□□ 1.79
PGK1P00558 PARD6B-202ENST00000396039 522 ntTSL 1 (best) BASIC26.26■■□□□ 1.79
PGK1P00558 CDKN2A-210ENST00000530628 748 ntAPPRIS P1 TSL 5 BASIC26.26■■□□□ 1.79
PGK1P00558 ZNF32-202ENST00000395797 1201 ntAPPRIS P1 TSL 2 BASIC26.25■■□□□ 1.79
PGK1P00558 CDKN2A-206ENST00000494262 989 ntTSL 3 BASIC26.25■■□□□ 1.79
PGK1P00558 LURAP1L-201ENST00000319264 1753 ntAPPRIS P1 TSL 1 (best) BASIC26.25■■□□□ 1.79
PGK1P00558 IFNL4-201ENST00000606380 1637 ntAPPRIS P5 TSL 1 (best) BASIC26.25■■□□□ 1.79
PGK1P00558 ATP6V0A2-209ENST00000613625 1620 ntTSL 1 (best) BASIC26.25■■□□□ 1.79
PGK1P00558 SRD5A1P1-201ENST00000442297 786 ntBASIC26.24■■□□□ 1.79
PGK1P00558 LGR4-203ENST00000480977 492 ntTSL 2 BASIC26.24■■□□□ 1.79
PGK1P00558 AC024257.2-201ENST00000549699 147 ntBASIC26.24■■□□□ 1.79
PGK1P00558 MPP5-205ENST00000556345 1163 ntTSL 2 BASIC26.24■■□□□ 1.79
PGK1P00558 KRTAP5-4-202ENST00000616115 660 ntAPPRIS ALT2 TSL 5 BASIC26.24■■□□□ 1.79
PGK1P00558 TST-202ENST00000403892 1797 ntAPPRIS P1 TSL 1 (best) BASIC26.24■■□□□ 1.79
PGK1P00558 C11orf80-210ENST00000527634 1666 ntAPPRIS ALT2 TSL 5 BASIC26.24■■□□□ 1.79
PGK1P00558 STEAP2-207ENST00000402625 1372 ntTSL 5 BASIC26.23■■□□□ 1.79
PGK1P00558 FZD2-201ENST00000315323 2112 ntAPPRIS P1 BASIC26.23■■□□□ 1.79
PGK1P00558 SLC30A5-201ENST00000380860 1317 ntTSL 1 (best) BASIC26.23■■□□□ 1.79
PGK1P00558 CCDC166-201ENST00000542437 1320 ntAPPRIS P1 TSL 2 BASIC26.23■■□□□ 1.79
PGK1P00558 AL355987.3-201ENST00000456614 735 ntAPPRIS P1 TSL 4 BASIC26.23■■□□□ 1.79
PGK1P00558 SMIM29-205ENST00000468145 903 ntTSL 2 BASIC26.23■■□□□ 1.79
PGK1P00558 SMIM29-207ENST00000481533 1053 ntAPPRIS P1 TSL 1 (best) BASIC26.23■■□□□ 1.79
PGK1P00558 ACBD4-216ENST00000619916 1276 ntTSL 5 BASIC26.23■■□□□ 1.79
PGK1P00558 EIF6-201ENST00000374436 1252 ntAPPRIS P1 TSL 1 (best) BASIC26.22■■□□□ 1.79
PGK1P00558 FBXO33-202ENST00000554190 534 ntTSL 3 BASIC26.22■■□□□ 1.79
PGK1P00558 ATP10A-207ENST00000619904 988 ntTSL 5 BASIC26.22■■□□□ 1.79
PGK1P00558 PLEKHF1-201ENST00000436066 2084 ntAPPRIS P1 TSL 1 (best) BASIC26.22■■□□□ 1.79
PGK1P00558 PRSS22-201ENST00000161006 1386 ntAPPRIS P1 TSL 1 (best) BASIC26.21■■□□□ 1.79
PGK1P00558 GNB2-203ENST00000393926 1641 ntAPPRIS P1 TSL 5 BASIC26.21■■□□□ 1.79
PGK1P00558 ITGA9-203ENST00000422441 2282 ntTSL 1 (best) BASIC26.21■■□□□ 1.79
PGK1P00558 ANKS3-203ENST00000450067 2272 ntTSL 5 BASIC26.21■■□□□ 1.79
PGK1P00558 TNFRSF6B-201ENST00000369996 1124 ntAPPRIS P1 TSL 1 (best) BASIC26.21■■□□□ 1.79
PGK1P00558 HYI-206ENST00000372434 1025 ntTSL 5 BASIC26.21■■□□□ 1.79
PGK1P00558 LBH-205ENST00000407930 756 ntTSL 2 BASIC26.21■■□□□ 1.79
PGK1P00558 MFSD7-202ENST00000347950 1599 ntTSL 2 BASIC26.2■■□□□ 1.79
PGK1P00558 STMN4-201ENST00000265770 1250 ntAPPRIS P1 TSL 1 (best) BASIC26.2■■□□□ 1.78
PGK1P00558 MRPL46-201ENST00000312475 1019 ntAPPRIS P1 TSL 1 (best) BASIC26.2■■□□□ 1.78
PGK1P00558 NAA38-201ENST00000333775 999 ntTSL 1 (best) BASIC26.2■■□□□ 1.78
PGK1P00558 FGF8-204ENST00000347978 823 ntTSL 1 (best) BASIC26.2■■□□□ 1.78
PGK1P00558 LYPD2-201ENST00000359228 594 ntAPPRIS P1 TSL 1 (best) BASIC26.2■■□□□ 1.78
PGK1P00558 TCEA1-211ENST00000522635 1432 ntTSL 2 BASIC26.2■■□□□ 1.78
PGK1P00558 HSPBP1-201ENST00000255631 1768 ntAPPRIS P1 TSL 1 (best) BASIC26.2■■□□□ 1.78
PGK1P00558 C7orf25-205ENST00000438029 1743 ntAPPRIS P1 TSL 2 BASIC26.19■■□□□ 1.78
PGK1P00558 BMP7-204ENST00000450594 1857 ntTSL 2 BASIC26.19■■□□□ 1.78
PGK1P00558 SLIT1-203ENST00000371041 1695 ntTSL 2 BASIC26.19■■□□□ 1.78
PGK1P00558 SCCPDH-201ENST00000366510 2503 ntAPPRIS P1 TSL 1 (best) BASIC26.19■■□□□ 1.78
PGK1P00558 EDA-201ENST00000338901 1233 ntBASIC26.19■■□□□ 1.78
PGK1P00558 C19orf60-201ENST00000358607 839 ntAPPRIS P3 TSL 1 (best) BASIC26.19■■□□□ 1.78
PGK1P00558 C19orf60-202ENST00000450195 702 ntAPPRIS ALT2 TSL 1 (best) BASIC26.19■■□□□ 1.78
PGK1P00558 AL355001.2-201ENST00000620617 1191 ntBASIC26.19■■□□□ 1.78
PGK1P00558 GRAMD1B-217ENST00000640939 1212 ntTSL 5 BASIC26.19■■□□□ 1.78
PGK1P00558 TTBK2-205ENST00000567274 1777 ntTSL 5 BASIC26.19■■□□□ 1.78
PGK1P00558 PIK3R2-207ENST00000617130 2187 ntAPPRIS P1 TSL 1 (best) BASIC26.19■■□□□ 1.78
PGK1P00558 SPOCK3-221ENST00000512648 1456 ntTSL 1 (best) BASIC26.18■■□□□ 1.78
PGK1P00558 FLT1-202ENST00000539099 1911 ntTSL 1 (best) BASIC26.18■■□□□ 1.78
PGK1P00558 GFRA4-201ENST00000290417 1427 ntAPPRIS ALT2 TSL 1 (best) BASIC26.18■■□□□ 1.78
PGK1P00558 C1QTNF12-201ENST00000330388 1036 ntAPPRIS P1 TSL 1 (best) BASIC26.18■■□□□ 1.78
PGK1P00558 C7orf49-203ENST00000430372 1579 ntTSL 5 BASIC26.18■■□□□ 1.78
PGK1P00558 TMEM179-204ENST00000556573 1430 ntAPPRIS P1 TSL 3 BASIC26.18■■□□□ 1.78
PGK1P00558 RCE1-202ENST00000524506 1379 ntTSL 5 BASIC26.18■■□□□ 1.78
PGK1P00558 SYT8-201ENST00000341958 1556 ntAPPRIS ALT2 TSL 5 BASIC26.17■■□□□ 1.78
PGK1P00558 CCDC107-205ENST00000421582 1324 ntAPPRIS ALT2 TSL 2 BASIC26.16■■□□□ 1.78
PGK1P00558 CDC16-211ENST00000628084 2058 ntTSL 5 BASIC26.16■■□□□ 1.78
PGK1P00558 C1QTNF1-206ENST00000579760 1672 ntAPPRIS P1 TSL 1 (best) BASIC26.16■■□□□ 1.78
PGK1P00558 NR6A1-203ENST00000416460 1898 ntAPPRIS ALT2 TSL 1 (best) BASIC26.16■■□□□ 1.78
PGK1P00558 TP53I3-201ENST00000238721 1998 ntAPPRIS P1 TSL 1 (best) BASIC26.16■■□□□ 1.78
PGK1P00558 SEPT2-205ENST00000401990 1734 ntTSL 1 (best) BASIC26.16■■□□□ 1.78
PGK1P00558 DHFR-203ENST00000505337 1719 ntAPPRIS P1 TSL 2 BASIC26.16■■□□□ 1.78
PGK1P00558 RUNDC3A-201ENST00000225441 1821 ntTSL 1 (best) BASIC26.16■■□□□ 1.78
PGK1P00558 CLK2-203ENST00000368361 2166 ntAPPRIS ALT1 TSL 1 (best) BASIC26.16■■□□□ 1.78
PGK1P00558 AGAP1-202ENST00000336665 5427 ntAPPRIS P3 TSL 1 (best) BASIC26.16■■□□□ 1.78
PGK1P00558 PSMG1-201ENST00000331573 2154 ntAPPRIS P1 TSL 1 (best) BASIC26.15■■□□□ 1.78
PGK1P00558 BTBD6-204ENST00000463376 2195 ntAPPRIS ALT2 TSL 2 BASIC26.15■■□□□ 1.78
PGK1P00558 SMARCA5-AS1-201ENST00000500800 945 ntTSL 1 (best) BASIC26.15■■□□□ 1.78
PGK1P00558 FAM174B-207ENST00000555748 866 ntAPPRIS ALT2 TSL 3 BASIC26.15■■□□□ 1.78
PGK1P00558 PHF23-212ENST00000576955 1944 ntTSL 2 BASIC26.15■■□□□ 1.78
PGK1P00558 TSPAN4-202ENST00000397396 1332 ntTSL 5 BASIC26.14■■□□□ 1.78
PGK1P00558 GATM-206ENST00000558336 1522 ntTSL 2 BASIC26.14■■□□□ 1.78
PGK1P00558 FAIM-203ENST00000393034 927 ntAPPRIS P3 TSL 2 BASIC26.14■■□□□ 1.78
PGK1P00558 CROT-202ENST00000412227 1213 ntTSL 1 (best) BASIC26.14■■□□□ 1.78
PGK1P00558 AC105265.2-201ENST00000467189 838 ntBASIC26.14■■□□□ 1.78
PGK1P00558 TMEM170A-206ENST00000569276 609 ntTSL 2 BASIC26.14■■□□□ 1.78
PGK1P00558 GSX2-205ENST00000611459 1262 ntAPPRIS P1 TSL 1 (best) BASIC26.14■■□□□ 1.78
PGK1P00558 GMPPB-202ENST00000308388 1582 ntAPPRIS P1 TSL 1 (best) BASIC26.14■■□□□ 1.78
PGK1P00558 MROH6-202ENST00000524906 1794 ntAPPRIS ALT2 TSL 3 BASIC26.14■■□□□ 1.78
PGK1P00558 AC096887.2-201ENST00000623443 1957 ntBASIC26.14■■□□□ 1.77
PGK1P00558 TANGO2-214ENST00000447208 2086 ntTSL 3 BASIC26.14■■□□□ 1.77
PGK1P00558 HDGFL1-201ENST00000510882 2174 ntAPPRIS P1 BASIC26.14■■□□□ 1.77
PGK1P00558 RAB3IL1-202ENST00000394836 2284 ntAPPRIS P1 TSL 1 (best) BASIC26.13■■□□□ 1.77
PGK1P00558 ERN1-208ENST00000606895 2068 ntBASIC26.13■■□□□ 1.77
PGK1P00558 LINC00588-201ENST00000521663 1875 ntTSL 2 BASIC26.13■■□□□ 1.77
PGK1P00558 CHAC1-201ENST00000444189 1204 ntTSL 1 (best) BASIC26.13■■□□□ 1.77
PGK1P00558 MIR5787-201ENST00000611784 55 ntBASIC26.13■■□□□ 1.77
PGK1P00558 AL136967.2-201ENST00000623968 743 ntBASIC26.13■■□□□ 1.77
PGK1P00558 ZDHHC16-207ENST00000393760 2014 ntAPPRIS P4 TSL 1 (best) BASIC26.13■■□□□ 1.77
PGK1P00558 CEND1-201ENST00000330106 1649 ntAPPRIS P1 TSL 1 (best) BASIC26.13■■□□□ 1.77
Retrieved 100 of 98,524 protein–RNA pairs in 11.7 ms