Protein–RNA interactions for Protein: Q3MJ40

CCDC144B, Coiled-coil domain-containing protein 144B, humanhuman

Predictions only

Length 725 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC144BQ3MJ40 PES1-202ENST00000354694 2295 ntAPPRIS P3 TSL 1 (best) BASIC18.31■□□□□ 0.52
CCDC144BQ3MJ40 GRB2-202ENST00000316804 3248 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
CCDC144BQ3MJ40 SLC25A34-201ENST00000294454 2986 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
CCDC144BQ3MJ40 RELA-227ENST00000615805 2236 ntTSL 5 BASIC18.31■□□□□ 0.52
CCDC144BQ3MJ40 DRG1-201ENST00000331457 1746 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
CCDC144BQ3MJ40 LINC00221-202ENST00000619530 1499 ntTSL 2 BASIC18.31■□□□□ 0.52
CCDC144BQ3MJ40 ZNF30-202ENST00000439785 2651 ntAPPRIS P4 TSL 5 BASIC18.31■□□□□ 0.52
CCDC144BQ3MJ40 LDB3-208ENST00000623007 1664 ntTSL 1 (best) BASIC18.31■□□□□ 0.52
CCDC144BQ3MJ40 PCGF3-201ENST00000362003 5685 ntAPPRIS P1 TSL 5 BASIC18.31■□□□□ 0.52
CCDC144BQ3MJ40 CLDND1-222ENST00000510545 2124 ntAPPRIS P1 TSL 5 BASIC18.31■□□□□ 0.52
CCDC144BQ3MJ40 SFRP1-201ENST00000220772 4492 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
CCDC144BQ3MJ40 HSPA4L-204ENST00000508776 3020 ntAPPRIS P1 TSL 2 BASIC18.31■□□□□ 0.52
CCDC144BQ3MJ40 CRTC2-202ENST00000368630 1635 ntTSL 2 BASIC18.31■□□□□ 0.52
CCDC144BQ3MJ40 KDM5C-204ENST00000375401 6031 ntAPPRIS P3 TSL 1 (best) BASIC18.31■□□□□ 0.52
CCDC144BQ3MJ40 CPEB3-203ENST00000614585 5789 ntAPPRIS P3 TSL 5 BASIC18.3■□□□□ 0.52
CCDC144BQ3MJ40 ABTB1-206ENST00000468137 2065 ntTSL 1 (best) BASIC18.3■□□□□ 0.52
CCDC144BQ3MJ40 KLK15-201ENST00000326856 1389 ntAPPRIS ALT1 TSL 5 BASIC18.3■□□□□ 0.52
CCDC144BQ3MJ40 TVP23C-210ENST00000584811 2989 ntTSL 1 (best) BASIC18.3■□□□□ 0.52
CCDC144BQ3MJ40 COTL1-201ENST00000262428 1843 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
CCDC144BQ3MJ40 CLIC6-202ENST00000360731 3860 ntAPPRIS ALT2 TSL 1 (best) BASIC18.3■□□□□ 0.52
CCDC144BQ3MJ40 MAP4K1-210ENST00000591517 2700 ntTSL 1 (best) BASIC18.3■□□□□ 0.52
CCDC144BQ3MJ40 MFSD5-202ENST00000534842 2038 ntTSL 2 BASIC18.3■□□□□ 0.52
CCDC144BQ3MJ40 BEGAIN-201ENST00000355173 2674 ntTSL 1 (best) BASIC18.3■□□□□ 0.52
CCDC144BQ3MJ40 ARHGAP39-202ENST00000377307 4673 ntAPPRIS P3 TSL 5 BASIC18.3■□□□□ 0.52
CCDC144BQ3MJ40 PHRF1-201ENST00000264555 5523 ntAPPRIS ALT2 TSL 1 (best) BASIC18.3■□□□□ 0.52
CCDC144BQ3MJ40 ADGRA1-AS1-202ENST00000444433 2646 ntTSL 3 BASIC18.3■□□□□ 0.52
CCDC144BQ3MJ40 RAB11FIP5-205ENST00000486777 6120 ntTSL 5 BASIC18.3■□□□□ 0.52
CCDC144BQ3MJ40 POMK-203ENST00000614426 1527 ntAPPRIS P1 TSL 4 BASIC18.3■□□□□ 0.52
CCDC144BQ3MJ40 RABEPK-206ENST00000628863 1537 ntTSL 5 BASIC18.3■□□□□ 0.52
CCDC144BQ3MJ40 AC069224.1-201ENST00000566372 1715 ntBASIC18.3■□□□□ 0.52
CCDC144BQ3MJ40 MFSD14B-201ENST00000375344 3420 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
CCDC144BQ3MJ40 BMP4-201ENST00000245451 1917 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
CCDC144BQ3MJ40 FLYWCH2-201ENST00000293981 915 ntAPPRIS P2 TSL 3 BASIC18.3■□□□□ 0.52
CCDC144BQ3MJ40 LRRC28-202ENST00000331450 752 ntTSL 1 (best) BASIC18.3■□□□□ 0.52
CCDC144BQ3MJ40 TSPAN4-201ENST00000346501 882 ntTSL 3 BASIC18.3■□□□□ 0.52
CCDC144BQ3MJ40 PIR-201ENST00000380420 1282 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
CCDC144BQ3MJ40 AL589987.1-201ENST00000453380 819 ntBASIC18.3■□□□□ 0.52
CCDC144BQ3MJ40 AL139010.1-201ENST00000454878 894 ntBASIC18.3■□□□□ 0.52
CCDC144BQ3MJ40 PRSS48-202ENST00000455694 989 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
CCDC144BQ3MJ40 BRK1-201ENST00000530758 1233 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
CCDC144BQ3MJ40 AC138207.8-201ENST00000579692 739 ntTSL 3 BASIC18.3■□□□□ 0.52
CCDC144BQ3MJ40 IFT20-215ENST00000585313 852 ntAPPRIS P4 TSL 3 BASIC18.3■□□□□ 0.52
CCDC144BQ3MJ40 C18orf21-207ENST00000610527 1059 ntTSL 2 BASIC18.3■□□□□ 0.52
CCDC144BQ3MJ40 AL162274.1-201ENST00000617191 1098 ntBASIC18.3■□□□□ 0.52
CCDC144BQ3MJ40 C18orf21-208ENST00000618334 856 ntTSL 3 BASIC18.3■□□□□ 0.52
CCDC144BQ3MJ40 SYT6-205ENST00000609117 4424 ntTSL 5 BASIC18.3■□□□□ 0.52
CCDC144BQ3MJ40 ZNF789-201ENST00000331410 1654 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
CCDC144BQ3MJ40 MAP4K4-205ENST00000350878 7640 ntTSL 1 (best) BASIC18.3■□□□□ 0.52
CCDC144BQ3MJ40 KRT82-201ENST00000257974 2664 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
CCDC144BQ3MJ40 CNKSR1-214ENST00000531191 2673 ntTSL 5 BASIC18.3■□□□□ 0.52
CCDC144BQ3MJ40 NSUN5-202ENST00000310326 1602 ntAPPRIS ALT2 TSL 2 BASIC18.3■□□□□ 0.52
CCDC144BQ3MJ40 MARVELD1-201ENST00000285605 3221 ntAPPRIS P1 TSL 2 BASIC18.3■□□□□ 0.52
CCDC144BQ3MJ40 KDM4B-201ENST00000159111 5593 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
CCDC144BQ3MJ40 PGAP2-205ENST00000396993 1566 ntTSL 1 (best) BASIC18.3■□□□□ 0.52
CCDC144BQ3MJ40 GDPD3-202ENST00000406256 1397 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
CCDC144BQ3MJ40 DNM1-201ENST00000341179 3254 ntAPPRIS ALT1 TSL 1 (best) BASIC18.29■□□□□ 0.52
CCDC144BQ3MJ40 SNX5-202ENST00000377768 2288 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
CCDC144BQ3MJ40 MMP25-201ENST00000336577 3554 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
CCDC144BQ3MJ40 SAE1-202ENST00000392776 1851 ntTSL 3 BASIC18.29■□□□□ 0.52
CCDC144BQ3MJ40 DUS2-202ENST00000432752 1864 ntTSL 2 BASIC18.29■□□□□ 0.52
CCDC144BQ3MJ40 SFRP4-201ENST00000436072 2966 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
CCDC144BQ3MJ40 CRYZL1-202ENST00000361534 2224 ntTSL 1 (best) BASIC18.29■□□□□ 0.52
CCDC144BQ3MJ40 SATB2-202ENST00000417098 5730 ntAPPRIS P1 TSL 2 BASIC18.29■□□□□ 0.52
CCDC144BQ3MJ40 PPP1CB-202ENST00000358506 4771 ntAPPRIS P1 TSL 5 BASIC18.29■□□□□ 0.52
CCDC144BQ3MJ40 H2BFWT-201ENST00000217926 894 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
CCDC144BQ3MJ40 TMEM52-201ENST00000310991 929 ntAPPRIS P2 TSL 1 (best) BASIC18.29■□□□□ 0.52
CCDC144BQ3MJ40 SMAGP-202ENST00000398453 1062 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
CCDC144BQ3MJ40 AC079776.1-201ENST00000401540 1152 ntBASIC18.29■□□□□ 0.52
CCDC144BQ3MJ40 ESPNP-202ENST00000414828 571 ntTSL 3 BASIC18.29■□□□□ 0.52
CCDC144BQ3MJ40 SSBP1-214ENST00000498107 636 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
CCDC144BQ3MJ40 FAM92A-214ENST00000522324 1072 ntTSL 2 BASIC18.29■□□□□ 0.52
CCDC144BQ3MJ40 COQ7-202ENST00000544894 819 ntAPPRIS ALT2 TSL 1 (best) BASIC18.29■□□□□ 0.52
CCDC144BQ3MJ40 AC005520.2-201ENST00000556194 573 ntTSL 2 BASIC18.29■□□□□ 0.52
CCDC144BQ3MJ40 AC017083.2-201ENST00000608069 979 ntBASIC18.29■□□□□ 0.52
CCDC144BQ3MJ40 PIGW-204ENST00000614443 2312 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
CCDC144BQ3MJ40 HSD17B7P2-202ENST00000494540 1401 ntTSL 1 (best) BASIC18.29■□□□□ 0.52
CCDC144BQ3MJ40 LMF1-AS1-202ENST00000569574 1408 ntTSL 3 BASIC18.29■□□□□ 0.52
CCDC144BQ3MJ40 MAGEA8-201ENST00000286482 1778 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
CCDC144BQ3MJ40 AC003986.2-201ENST00000419944 1711 ntTSL 3 BASIC18.29■□□□□ 0.52
CCDC144BQ3MJ40 REPIN1-201ENST00000397281 3292 ntAPPRIS P3 TSL 2 BASIC18.29■□□□□ 0.52
CCDC144BQ3MJ40 MPV17L-201ENST00000287594 5820 ntTSL 1 (best) BASIC18.29■□□□□ 0.52
CCDC144BQ3MJ40 TBX5-203ENST00000405440 2203 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
CCDC144BQ3MJ40 AC009242.1-201ENST00000634300 2706 ntTSL 5 BASIC18.29■□□□□ 0.52
CCDC144BQ3MJ40 PRAG1-201ENST00000615670 4903 ntAPPRIS P1 TSL 5 BASIC18.28■□□□□ 0.52
CCDC144BQ3MJ40 VARS2-212ENST00000542001 4064 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
CCDC144BQ3MJ40 PARVB-210ENST00000619710 1530 ntTSL 1 (best) BASIC18.28■□□□□ 0.52
CCDC144BQ3MJ40 CACNA1A-227ENST00000636549 6792 ntAPPRIS ALT2 TSL 5 BASIC18.28■□□□□ 0.52
CCDC144BQ3MJ40 DLGAP2-215ENST00000637795 3380 ntTSL 5 BASIC18.28■□□□□ 0.52
CCDC144BQ3MJ40 LINC00937-207ENST00000544461 3033 ntTSL 2 BASIC18.28■□□□□ 0.52
CCDC144BQ3MJ40 PHF23-202ENST00000454255 1662 ntTSL 2 BASIC18.28■□□□□ 0.52
CCDC144BQ3MJ40 PALLD-215ENST00000512127 2958 ntTSL 2 BASIC18.28■□□□□ 0.52
CCDC144BQ3MJ40 COX11-201ENST00000299335 2497 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
CCDC144BQ3MJ40 RAB31-207ENST00000578921 4055 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
CCDC144BQ3MJ40 RGPD5-202ENST00000272454 2907 ntTSL 2 BASIC18.28■□□□□ 0.52
CCDC144BQ3MJ40 MTA2-201ENST00000278823 3058 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
CCDC144BQ3MJ40 CRK-201ENST00000300574 3880 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
CCDC144BQ3MJ40 ZNF804A-201ENST00000302277 4690 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
CCDC144BQ3MJ40 SLC34A1-201ENST00000324417 2573 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
CCDC144BQ3MJ40 FAM160B1-203ENST00000369250 2870 ntTSL 1 (best) BASIC18.28■□□□□ 0.52
CCDC144BQ3MJ40 FTH1-201ENST00000273550 1229 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
Retrieved 100 of 98,524 protein–RNA pairs in 40 ms