Protein–RNA interactions for Protein: P67936

TPM4, Tropomyosin alpha-4 chain, humanhuman

Predictions only

Length 248 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TPM4P67936 PCK2-203ENST00000545054 2505 ntTSL 2 BASIC17.74■□□□□ 0.43
TPM4P67936 MIRLET7BHG-203ENST00000435439 2264 ntTSL 2 BASIC17.74■□□□□ 0.43
TPM4P67936 AL928654.2-201ENST00000551271 2279 ntTSL 3 BASIC17.74■□□□□ 0.43
TPM4P67936 SHISA5-219ENST00000612611 1677 ntTSL 5 BASIC17.74■□□□□ 0.43
TPM4P67936 CSPG4P12-202ENST00000559989 7790 ntTSL 1 (best) BASIC17.74■□□□□ 0.43
TPM4P67936 SLC35C2-213ENST00000543605 5740 ntTSL 1 (best) BASIC17.74■□□□□ 0.43
TPM4P67936 S1PR2-201ENST00000590320 3582 ntAPPRIS P1 TSL 3 BASIC17.74■□□□□ 0.43
TPM4P67936 CCDC40-202ENST00000374876 2010 ntTSL 1 (best) BASIC17.74■□□□□ 0.43
TPM4P67936 PRDM15-201ENST00000269844 4881 ntAPPRIS P3 TSL 1 (best) BASIC17.74■□□□□ 0.43
TPM4P67936 TNFAIP3-207ENST00000614035 1430 ntTSL 5 BASIC17.74■□□□□ 0.43
TPM4P67936 AC104581.4-201ENST00000623126 3052 ntBASIC17.74■□□□□ 0.43
TPM4P67936 FAM192A-201ENST00000309137 2848 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
TPM4P67936 MOCS3-201ENST00000244051 5106 ntAPPRIS P1 BASIC17.74■□□□□ 0.43
TPM4P67936 SPEG-205ENST00000396698 3379 ntTSL 5 BASIC17.74■□□□□ 0.43
TPM4P67936 FOXRED1-201ENST00000263578 1970 ntAPPRIS P2 TSL 1 (best) BASIC17.74■□□□□ 0.43
TPM4P67936 PTPMT1-201ENST00000326656 928 ntTSL 1 (best) BASIC17.74■□□□□ 0.43
TPM4P67936 CENPM-204ENST00000402420 688 ntTSL 5 BASIC17.74■□□□□ 0.43
TPM4P67936 MECP2-203ENST00000407218 1174 ntTSL 5 BASIC17.74■□□□□ 0.43
TPM4P67936 DECR2-202ENST00000424398 1012 ntTSL 5 BASIC17.74■□□□□ 0.43
TPM4P67936 AL645939.2-201ENST00000427340 991 ntBASIC17.74■□□□□ 0.43
TPM4P67936 C1orf109-203ENST00000464085 919 ntAPPRIS P1 TSL 2 BASIC17.74■□□□□ 0.43
TPM4P67936 CHMP2A-208ENST00000601220 885 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
TPM4P67936 NOL12-207ENST00000611699 903 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
TPM4P67936 SNX18-202ENST00000343017 3140 ntBASIC17.74■□□□□ 0.43
TPM4P67936 ALDH3A2-221ENST00000581518 2785 ntAPPRIS ALT1 TSL 5 BASIC17.74■□□□□ 0.43
TPM4P67936 GSN-215ENST00000545652 2428 ntTSL 2 BASIC17.74■□□□□ 0.43
TPM4P67936 CELP-203ENST00000624767 2414 ntTSL 5 BASIC17.74■□□□□ 0.43
TPM4P67936 DBF4-201ENST00000265728 3907 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
TPM4P67936 LINC01010-201ENST00000431422 2069 ntTSL 2 BASIC17.74■□□□□ 0.43
TPM4P67936 SUGP2-215ENST00000601879 5546 ntAPPRIS P3 TSL 2 BASIC17.74■□□□□ 0.43
TPM4P67936 RNFT2-203ENST00000392549 2896 ntAPPRIS P1 TSL 5 BASIC17.74■□□□□ 0.43
TPM4P67936 NFIC-203ENST00000443272 1716 ntAPPRIS P1 TSL 2 BASIC17.74■□□□□ 0.43
TPM4P67936 CLEC18A-201ENST00000288040 2155 ntAPPRIS P2 TSL 1 (best) BASIC17.74■□□□□ 0.43
TPM4P67936 PKN1-202ENST00000342216 2960 ntTSL 2 BASIC17.74■□□□□ 0.43
TPM4P67936 AAK1-202ENST00000409068 2606 ntTSL 2 BASIC17.74■□□□□ 0.43
TPM4P67936 FBLN2-203ENST00000404922 4318 ntAPPRIS P4 TSL 5 BASIC17.74■□□□□ 0.43
TPM4P67936 PCDHB8-201ENST00000239444 2740 ntAPPRIS P1 BASIC17.74■□□□□ 0.43
TPM4P67936 KREMEN1-201ENST00000327813 2719 ntAPPRIS P3 TSL 2 BASIC17.74■□□□□ 0.43
TPM4P67936 SHROOM1-201ENST00000319854 3190 ntAPPRIS P3 TSL 1 (best) BASIC17.74■□□□□ 0.43
TPM4P67936 PTBP1-201ENST00000349038 3155 ntAPPRIS P3 TSL 1 (best) BASIC17.74■□□□□ 0.43
TPM4P67936 PTBP1-204ENST00000394601 3185 ntTSL 1 (best) BASIC17.74■□□□□ 0.43
TPM4P67936 TCP11L1-201ENST00000334274 2817 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
TPM4P67936 HOXB5-201ENST00000239151 2041 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
TPM4P67936 NEBL-203ENST00000417816 3008 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
TPM4P67936 PSMA8-202ENST00000343848 1675 ntTSL 1 (best) BASIC17.74■□□□□ 0.43
TPM4P67936 EIF4A1-201ENST00000293831 1756 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
TPM4P67936 AC148477.4-201ENST00000613430 1793 ntBASIC17.74■□□□□ 0.43
TPM4P67936 CFAP53-201ENST00000398545 1851 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
TPM4P67936 CYP4F2-202ENST00000221700 2407 ntAPPRIS P2 TSL 1 (best) BASIC17.73■□□□□ 0.43
TPM4P67936 WDR45-201ENST00000322995 1444 ntTSL 5 BASIC17.73■□□□□ 0.43
TPM4P67936 ZMYM3-206ENST00000373988 6021 ntAPPRIS ALT1 TSL 5 BASIC17.73■□□□□ 0.43
TPM4P67936 TMEM30B-202ENST00000555868 4471 ntAPPRIS P1 BASIC17.73■□□□□ 0.43
TPM4P67936 SUPT20H-201ENST00000350612 2739 ntAPPRIS ALT2 TSL 1 (best) BASIC17.73■□□□□ 0.43
TPM4P67936 ZBTB45P2-201ENST00000452245 1531 ntBASIC17.73■□□□□ 0.43
TPM4P67936 PTHLH-209ENST00000545234 1544 ntAPPRIS ALT1 TSL 5 BASIC17.73■□□□□ 0.43
TPM4P67936 SETD7-204ENST00000506866 1602 ntTSL 1 (best) BASIC17.73■□□□□ 0.43
TPM4P67936 STRA6-218ENST00000574278 2455 ntTSL 2 BASIC17.73■□□□□ 0.43
TPM4P67936 AC127383.1-201ENST00000444697 1800 ntBASIC17.73■□□□□ 0.43
TPM4P67936 ABCC6-208ENST00000622290 4941 ntTSL 5 BASIC17.73■□□□□ 0.43
TPM4P67936 FAM219A-204ENST00000379081 3543 ntTSL 5 BASIC17.73■□□□□ 0.43
TPM4P67936 SRRT-217ENST00000618411 2893 ntAPPRIS ALT2 TSL 1 (best) BASIC17.73■□□□□ 0.43
TPM4P67936 LIM2-201ENST00000221973 983 ntTSL 1 (best) BASIC17.73■□□□□ 0.43
TPM4P67936 RAMP1-201ENST00000254661 910 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
TPM4P67936 INSL3-201ENST00000317306 755 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
TPM4P67936 ZNF789-202ENST00000379724 510 ntTSL 2 BASIC17.73■□□□□ 0.43
TPM4P67936 THAP7-202ENST00000399133 1144 ntAPPRIS P1 TSL 2 BASIC17.73■□□□□ 0.43
TPM4P67936 DDT-204ENST00000404092 805 ntTSL 3 BASIC17.73■□□□□ 0.43
TPM4P67936 KCNT1-207ENST00000487664 3845 ntAPPRIS ALT2 TSL 5 BASIC17.73■□□□□ 0.43
TPM4P67936 TOLLIP-AS1-201ENST00000530897 939 ntBASIC17.73■□□□□ 0.43
TPM4P67936 POLD4-207ENST00000531239 584 ntTSL 2 BASIC17.73■□□□□ 0.43
TPM4P67936 OTUB2-202ENST00000553723 708 ntTSL 1 (best) BASIC17.73■□□□□ 0.43
TPM4P67936 TPM1-226ENST00000560959 925 ntTSL 2 BASIC17.73■□□□□ 0.43
TPM4P67936 TCAP-202ENST00000578283 583 ntTSL 5 BASIC17.73■□□□□ 0.43
TPM4P67936 CD7-202ENST00000578509 925 ntTSL 3 BASIC17.73■□□□□ 0.43
TPM4P67936 AC024267.1-201ENST00000582320 895 ntBASIC17.73■□□□□ 0.43
TPM4P67936 TP73-AS1-207ENST00000624167 988 ntBASIC17.73■□□□□ 0.43
TPM4P67936 AC117500.6-201ENST00000624871 588 ntBASIC17.73■□□□□ 0.43
TPM4P67936 HCK-209ENST00000538448 2215 ntAPPRIS ALT2 TSL 2 BASIC17.73■□□□□ 0.43
TPM4P67936 FAM156A-206ENST00000612915 2233 ntAPPRIS P2 TSL 5 BASIC17.73■□□□□ 0.43
TPM4P67936 CD300LG-204ENST00000539718 1399 ntAPPRIS ALT2 TSL 1 (best) BASIC17.73■□□□□ 0.43
TPM4P67936 LMX1B-202ENST00000373474 5797 ntTSL 1 (best) BASIC17.73■□□□□ 0.43
TPM4P67936 SYT5-201ENST00000354308 3792 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
TPM4P67936 MTFMT-201ENST00000220058 2734 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
TPM4P67936 CBLN4-201ENST00000064571 3024 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
TPM4P67936 GLMP-214ENST00000614643 1851 ntAPPRIS ALT2 TSL 2 BASIC17.73■□□□□ 0.43
TPM4P67936 FLI1-205ENST00000527786 4127 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
TPM4P67936 GRSF1-208ENST00000545193 2682 ntTSL 2 BASIC17.73■□□□□ 0.43
TPM4P67936 PLXNB3-209ENST00000538966 6377 ntAPPRIS ALT2 TSL 5 BASIC17.73■□□□□ 0.43
TPM4P67936 ZFP41-203ENST00000520584 3284 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
TPM4P67936 CNOT9-208ENST00000542068 3259 ntAPPRIS P1 TSL 5 BASIC17.73■□□□□ 0.43
TPM4P67936 C6orf136-203ENST00000376473 1402 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
TPM4P67936 C21orf33-202ENST00000348499 1506 ntTSL 1 (best) BASIC17.72■□□□□ 0.43
TPM4P67936 MRPS22-212ENST00000495075 1547 ntAPPRIS P2 TSL 1 (best) BASIC17.72■□□□□ 0.43
TPM4P67936 SELENOV-201ENST00000335426 1704 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
TPM4P67936 TNIP1-219ENST00000524280 1716 ntTSL 1 (best) BASIC17.72■□□□□ 0.43
TPM4P67936 SELENOV-205ENST00000622070 1704 ntTSL 5 BASIC17.72■□□□□ 0.43
TPM4P67936 PLD3-201ENST00000356508 1906 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
TPM4P67936 GPS1-227ENST00000623761 1943 ntTSL 2 BASIC17.72■□□□□ 0.43
TPM4P67936 PCBP4-205ENST00000461554 2147 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
TPM4P67936 SRC-202ENST00000373558 4304 ntTSL 5 BASIC17.72■□□□□ 0.43
Retrieved 100 of 98,524 protein–RNA pairs in 65.2 ms