Protein–RNA interactions for Protein: P20585

MSH3, DNA mismatch repair protein Msh3, humanhuman

Predictions only

Length 1,137 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSH3P20585 LINC01270-201ENST00000371639 2281 ntTSL 2 BASIC15.74■□□□□ 0.11
MSH3P20585 RAB1A-203ENST00000409784 2447 ntAPPRIS P1 TSL 1 (best) BASIC15.74■□□□□ 0.11
MSH3P20585 IL11RA-202ENST00000441545 1700 ntAPPRIS P1 TSL 5 BASIC15.74■□□□□ 0.11
MSH3P20585 NMRAL1-201ENST00000283429 1376 ntAPPRIS P1 TSL 1 (best) BASIC15.74■□□□□ 0.11
MSH3P20585 AP000253.1-201ENST00000449339 2233 ntTSL 3 BASIC15.74■□□□□ 0.11
MSH3P20585 CNGA4-201ENST00000379936 1863 ntAPPRIS P1 TSL 1 (best) BASIC15.74■□□□□ 0.11
MSH3P20585 AC092384.3-202ENST00000564646 2873 ntBASIC15.73■□□□□ 0.11
MSH3P20585 LMNA-203ENST00000368297 1679 ntTSL 2 BASIC15.73■□□□□ 0.11
MSH3P20585 PRRT2-214ENST00000637064 2153 ntAPPRIS P1 TSL 5 BASIC15.73■□□□□ 0.11
MSH3P20585 RCN2-203ENST00000394885 6347 ntAPPRIS P1 TSL 1 (best) BASIC15.73■□□□□ 0.11
MSH3P20585 PFDN4-201ENST00000371419 1462 ntAPPRIS P1 TSL 1 (best) BASIC15.73■□□□□ 0.11
MSH3P20585 FBXO22-202ENST00000453211 1486 ntTSL 2 BASIC15.73■□□□□ 0.11
MSH3P20585 CLN3-229ENST00000567963 1452 ntTSL 5 BASIC15.73■□□□□ 0.11
MSH3P20585 ZNF398-203ENST00000483892 2121 ntTSL 5 BASIC15.73■□□□□ 0.11
MSH3P20585 POLR1D-207ENST00000621089 1606 ntTSL 1 (best) BASIC15.73■□□□□ 0.11
MSH3P20585 PMS1-212ENST00000432292 3234 ntTSL 2 BASIC15.73■□□□□ 0.11
MSH3P20585 ZNF767P-201ENST00000463567 3520 ntTSL 2 BASIC15.73■□□□□ 0.11
MSH3P20585 GMNN-201ENST00000230056 1262 ntAPPRIS P1 TSL 1 (best) BASIC15.73■□□□□ 0.11
MSH3P20585 JTB-201ENST00000271843 1287 ntAPPRIS P1 TSL 1 (best) BASIC15.73■□□□□ 0.11
MSH3P20585 CABP5-201ENST00000293255 1257 ntAPPRIS P1 TSL 1 (best) BASIC15.73■□□□□ 0.11
MSH3P20585 MRPL55-201ENST00000295008 632 ntAPPRIS P1 TSL 2 BASIC15.73■□□□□ 0.11
MSH3P20585 DUPD1-201ENST00000338487 663 ntAPPRIS P1 TSL 1 (best) BASIC15.73■□□□□ 0.11
MSH3P20585 RPL36-201ENST00000347512 707 ntAPPRIS P1 TSL 1 (best) BASIC15.73■□□□□ 0.11
MSH3P20585 C1orf43-203ENST00000368516 872 ntTSL 2 BASIC15.73■□□□□ 0.11
MSH3P20585 AC008443.3-201ENST00000412295 549 ntTSL 4 BASIC15.73■□□□□ 0.11
MSH3P20585 HNRNPA1P40-201ENST00000426371 1278 ntBASIC15.73■□□□□ 0.11
MSH3P20585 PIGZ-204ENST00000443835 675 ntTSL 4 BASIC15.73■□□□□ 0.11
MSH3P20585 TMEM176B-205ENST00000450753 1006 ntTSL 2 BASIC15.73■□□□□ 0.11
MSH3P20585 NSUN5P1-208ENST00000473960 500 ntTSL 3 BASIC15.73■□□□□ 0.11
MSH3P20585 LINC02437-201ENST00000505053 911 ntTSL 3 BASIC15.73■□□□□ 0.11
MSH3P20585 FAM92A-214ENST00000522324 1072 ntTSL 2 BASIC15.73■□□□□ 0.11
MSH3P20585 AQP6-203ENST00000551733 849 ntTSL 3 BASIC15.73■□□□□ 0.11
MSH3P20585 AC010336.2-201ENST00000564226 506 ntBASIC15.73■□□□□ 0.11
MSH3P20585 AC087741.1-203ENST00000576824 820 ntTSL 3 BASIC15.73■□□□□ 0.11
MSH3P20585 ARMC7-205ENST00000584947 445 ntTSL 3 BASIC15.73■□□□□ 0.11
MSH3P20585 RAB3D-202ENST00000589655 924 ntAPPRIS P1 TSL 2 BASIC15.73■□□□□ 0.11
MSH3P20585 AL355385.1-201ENST00000606123 409 ntBASIC15.73■□□□□ 0.11
MSH3P20585 ASNS-201ENST00000175506 2356 ntAPPRIS P1 TSL 1 (best) BASIC15.73■□□□□ 0.11
MSH3P20585 FAM222B-202ENST00000452648 2836 ntAPPRIS P1 TSL 2 BASIC15.73■□□□□ 0.11
MSH3P20585 ALOX12-AS1-201ENST00000399540 1730 ntTSL 2 BASIC15.73■□□□□ 0.11
MSH3P20585 AC022532.1-201ENST00000624563 1728 ntBASIC15.73■□□□□ 0.11
MSH3P20585 HMGA1-204ENST00000401473 1887 ntAPPRIS ALT1 TSL 1 (best) BASIC15.73■□□□□ 0.11
MSH3P20585 SPON1-201ENST00000576479 4837 ntAPPRIS P1 TSL 1 (best) BASIC15.73■□□□□ 0.11
MSH3P20585 PSMD9-201ENST00000261817 2307 ntAPPRIS ALT1 TSL 2 BASIC15.73■□□□□ 0.11
MSH3P20585 CNOT3-204ENST00000447684 2765 ntTSL 2 BASIC15.73■□□□□ 0.11
MSH3P20585 SH2B1-201ENST00000322610 3095 ntTSL 2 BASIC15.73■□□□□ 0.11
MSH3P20585 UBE3A-227ENST00000638011 8742 ntAPPRIS ALT1 TSL 5 BASIC15.73■□□□□ 0.11
MSH3P20585 DUSP26-203ENST00000523956 1373 ntAPPRIS P1 TSL 5 BASIC15.73■□□□□ 0.11
MSH3P20585 PTGES3-202ENST00000414274 1547 ntTSL 2 BASIC15.73■□□□□ 0.11
MSH3P20585 EIF4G1-216ENST00000427845 5038 ntTSL 5 BASIC15.73■□□□□ 0.11
MSH3P20585 XRCC1-202ENST00000543982 1994 ntTSL 2 BASIC15.73■□□□□ 0.11
MSH3P20585 GSKIP-201ENST00000438650 2140 ntAPPRIS P1 TSL 2 BASIC15.73■□□□□ 0.11
MSH3P20585 BRF1-206ENST00000446501 2858 ntTSL 2 BASIC15.73■□□□□ 0.11
MSH3P20585 KIFC3-206ENST00000541240 3047 ntTSL 2 BASIC15.73■□□□□ 0.11
MSH3P20585 KCNS1-201ENST00000306117 4538 ntAPPRIS P1 TSL 1 (best) BASIC15.73■□□□□ 0.11
MSH3P20585 TJP2-212ENST00000636438 4689 ntAPPRIS ALT2 TSL 5 BASIC15.73■□□□□ 0.11
MSH3P20585 COL26A1-203ENST00000613501 2970 ntAPPRIS ALT2 TSL 1 (best) BASIC15.72■□□□□ 0.11
MSH3P20585 RUNX1-202ENST00000344691 7274 ntAPPRIS ALT1 TSL 1 (best) BASIC15.72■□□□□ 0.11
MSH3P20585 ANKRD20A5P-207ENST00000581935 2089 ntTSL 2 BASIC15.72■□□□□ 0.11
MSH3P20585 PHLDB1-223ENST00000600882 5479 ntAPPRIS P3 TSL 1 (best) BASIC15.72■□□□□ 0.11
MSH3P20585 RDM1-227ENST00000619876 1491 ntAPPRIS ALT2 TSL 2 BASIC15.72■□□□□ 0.11
MSH3P20585 MBP-202ENST00000355994 2772 ntTSL 5 BASIC15.72■□□□□ 0.11
MSH3P20585 PLEKHG3-202ENST00000394691 4397 ntTSL 5 BASIC15.72■□□□□ 0.11
MSH3P20585 TTC6-206ENST00000553443 5833 ntAPPRIS P1 TSL 5 BASIC15.72■□□□□ 0.11
MSH3P20585 HTR1B-201ENST00000369947 2021 ntAPPRIS P1 BASIC15.72■□□□□ 0.11
MSH3P20585 PIGT-201ENST00000279035 1880 ntTSL 2 BASIC15.72■□□□□ 0.11
MSH3P20585 ESR2-209ENST00000555278 1883 ntTSL 1 (best) BASIC15.72■□□□□ 0.11
MSH3P20585 PDE1C-202ENST00000396182 2420 ntTSL 1 (best) BASIC15.72■□□□□ 0.11
MSH3P20585 ALOX15-205ENST00000574640 2422 ntTSL 2 BASIC15.72■□□□□ 0.11
MSH3P20585 NMU-201ENST00000264218 816 ntAPPRIS P1 TSL 1 (best) BASIC15.72■□□□□ 0.11
MSH3P20585 C11orf88-202ENST00000375618 712 ntAPPRIS ALT2 TSL 1 (best) BASIC15.72■□□□□ 0.11
MSH3P20585 AC008278.1-201ENST00000431117 568 ntTSL 4 BASIC15.72■□□□□ 0.11
MSH3P20585 ZFAND2B-212ENST00000444522 1199 ntAPPRIS P1 TSL 5 BASIC15.72■□□□□ 0.11
MSH3P20585 LINC01160-202ENST00000450155 894 ntTSL 3 BASIC15.72■□□□□ 0.11
MSH3P20585 INGX-202ENST00000489074 768 ntBASIC15.72■□□□□ 0.11
MSH3P20585 AC106897.1-201ENST00000512874 394 ntTSL 2 BASIC15.72■□□□□ 0.11
MSH3P20585 AC064807.1-203ENST00000520357 575 ntTSL 5 BASIC15.72■□□□□ 0.11
MSH3P20585 RPL10P19-202ENST00000520582 722 ntTSL 3 BASIC15.72■□□□□ 0.11
MSH3P20585 PSMD7-204ENST00000567958 692 ntTSL 3 BASIC15.72■□□□□ 0.11
MSH3P20585 SSH2-210ENST00000582084 560 ntTSL 3 BASIC15.72■□□□□ 0.11
MSH3P20585 AC243964.2-202ENST00000591312 752 ntTSL 2 BASIC15.72■□□□□ 0.11
MSH3P20585 AL844908.2-201ENST00000609461 460 ntBASIC15.72■□□□□ 0.11
MSH3P20585 RECQL4-209ENST00000617875 3809 ntAPPRIS P1 TSL 1 (best) BASIC15.72■□□□□ 0.11
MSH3P20585 UHMK1-202ENST00000489294 8478 ntAPPRIS P1 TSL 1 (best) BASIC15.72■□□□□ 0.11
MSH3P20585 ALOX15B-205ENST00000573359 1809 ntTSL 1 (best) BASIC15.72■□□□□ 0.11
MSH3P20585 RAB5C-201ENST00000346213 1671 ntAPPRIS P1 TSL 1 (best) BASIC15.72■□□□□ 0.11
MSH3P20585 PITX2-204ENST00000394595 1693 ntTSL 5 BASIC15.72■□□□□ 0.11
MSH3P20585 ANKHD1-202ENST00000297183 7606 ntTSL 5 BASIC15.72■□□□□ 0.11
MSH3P20585 DGAT1-206ENST00000528718 3711 ntAPPRIS P1 TSL 1 (best) BASIC15.72■□□□□ 0.11
MSH3P20585 FAM198B-203ENST00000585682 4900 ntAPPRIS P1 TSL 1 (best) BASIC15.72■□□□□ 0.11
MSH3P20585 NFIC-202ENST00000395111 1755 ntTSL 2 BASIC15.72■□□□□ 0.11
MSH3P20585 AL121845.3-201ENST00000490623 3119 ntTSL 5 BASIC15.72■□□□□ 0.11
MSH3P20585 AL354813.1-201ENST00000526566 2437 ntTSL 5 BASIC15.72■□□□□ 0.11
MSH3P20585 GINS2-201ENST00000253462 2673 ntAPPRIS P1 TSL 1 (best) BASIC15.71■□□□□ 0.11
MSH3P20585 SNAP47-AS1-201ENST00000413347 1708 ntTSL 2 BASIC15.71■□□□□ 0.11
MSH3P20585 CASK-202ENST00000378158 3848 ntTSL 5 BASIC15.71■□□□□ 0.11
MSH3P20585 TMEM5-205ENST00000537373 1966 ntTSL 1 (best) BASIC15.71■□□□□ 0.11
MSH3P20585 CCHCR1-202ENST00000396263 2490 ntTSL 5 BASIC15.71■□□□□ 0.11
MSH3P20585 ADAM15-205ENST00000360674 2732 ntAPPRIS ALT2 TSL 1 (best) BASIC15.71■□□□□ 0.11
MSH3P20585 PODNL1-204ENST00000538517 2744 ntTSL 2 BASIC15.71■□□□□ 0.11
Retrieved 100 of 98,524 protein–RNA pairs in 30.9 ms