Protein–RNA interactions for Protein: P07339

CTSD, Cathepsin D, humanhuman

Predicted RBP Predictions only

Length 412 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CTSDP07339 TOLLIP-AS1-201ENST00000530897 939 ntBASIC13.15□□□□□ -0.3
CTSDP07339 TRMT112-202ENST00000535126 704 ntTSL 2 BASIC13.15□□□□□ -0.3
CTSDP07339 CHMP1A-208ENST00000550102 803 ntTSL 5 BASIC13.15□□□□□ -0.3
CTSDP07339 RPL28-209ENST00000560055 670 ntTSL 3 BASIC13.15□□□□□ -0.3
CTSDP07339 AC133919.2-201ENST00000565965 589 ntTSL 4 BASIC13.15□□□□□ -0.3
CTSDP07339 FAM220A-205ENST00000578372 207 ntAPPRIS P1 TSL 1 (best) BASIC13.15□□□□□ -0.3
CTSDP07339 AC005625.1-201ENST00000590304 472 ntTSL 3 BASIC13.15□□□□□ -0.3
CTSDP07339 AC022150.1-201ENST00000599222 640 ntTSL 3 BASIC13.15□□□□□ -0.3
CTSDP07339 CEACAM3-208ENST00000630848 1110 ntAPPRIS ALT2 TSL 5 BASIC13.15□□□□□ -0.3
CTSDP07339 PARP10-201ENST00000313028 3497 ntAPPRIS P3 TSL 1 (best) BASIC13.15□□□□□ -0.3
CTSDP07339 AEN-201ENST00000332810 3117 ntAPPRIS P1 TSL 1 (best) BASIC13.15□□□□□ -0.3
CTSDP07339 EXOG-201ENST00000287675 2792 ntAPPRIS P1 TSL 1 (best) BASIC13.15□□□□□ -0.3
CTSDP07339 SEC24D-202ENST00000419654 2786 ntTSL 5 BASIC13.15□□□□□ -0.3
CTSDP07339 PCDHB13-201ENST00000341948 5061 ntAPPRIS P1 BASIC13.15□□□□□ -0.3
CTSDP07339 MAP3K1-201ENST00000399503 7011 ntAPPRIS P1 TSL 1 (best) BASIC13.15□□□□□ -0.3
CTSDP07339 MFSD13A-201ENST00000238936 2852 ntAPPRIS P1 TSL 5 BASIC13.15□□□□□ -0.3
CTSDP07339 MOCS1-205ENST00000373195 2852 ntTSL 2 BASIC13.15□□□□□ -0.3
CTSDP07339 AC026688.2-201ENST00000518984 1734 ntTSL 3 BASIC13.15□□□□□ -0.3
CTSDP07339 ANAPC5-201ENST00000261819 2513 ntAPPRIS P1 TSL 1 (best) BASIC13.15□□□□□ -0.3
CTSDP07339 TPSAB1-202ENST00000461509 1357 ntAPPRIS ALT2 TSL 1 (best) BASIC13.15□□□□□ -0.3
CTSDP07339 MTRF1L-201ENST00000367230 3431 ntTSL 1 (best) BASIC13.15□□□□□ -0.3
CTSDP07339 RPH3AL-202ENST00000331302 2606 ntAPPRIS P2 TSL 2 BASIC13.15□□□□□ -0.3
CTSDP07339 MFSD4A-207ENST00000536357 1841 ntTSL 2 BASIC13.15□□□□□ -0.3
CTSDP07339 DNAJB1-201ENST00000254322 2264 ntAPPRIS P1 TSL 1 (best) BASIC13.15□□□□□ -0.3
CTSDP07339 TPD52L2-202ENST00000346249 2297 ntAPPRIS ALT1 TSL 1 (best) BASIC13.15□□□□□ -0.3
CTSDP07339 LRCH3-202ENST00000414675 2299 ntAPPRIS ALT2 TSL 2 BASIC13.15□□□□□ -0.3
CTSDP07339 KTN1-AS1-201ENST00000335142 1465 ntTSL 1 (best) BASIC13.15□□□□□ -0.3
CTSDP07339 CAPN5-202ENST00000456580 2805 ntTSL 2 BASIC13.15□□□□□ -0.3
CTSDP07339 RRP1B-201ENST00000340648 5090 ntAPPRIS P1 TSL 1 (best) BASIC13.15□□□□□ -0.3
CTSDP07339 CTNS-202ENST00000381870 2470 ntTSL 1 (best) BASIC13.15□□□□□ -0.3
CTSDP07339 AMPD3-203ENST00000396554 3806 ntTSL 1 (best) BASIC13.15□□□□□ -0.3
CTSDP07339 PDGFB-201ENST00000331163 3497 ntAPPRIS P1 TSL 1 (best) BASIC13.15□□□□□ -0.3
CTSDP07339 ZNF165-201ENST00000377325 2107 ntAPPRIS P1 TSL 1 (best) BASIC13.15□□□□□ -0.3
CTSDP07339 GRAP-201ENST00000284154 2651 ntAPPRIS P1 TSL 1 (best) BASIC13.15□□□□□ -0.31
CTSDP07339 CEP170B-204ENST00000556508 6683 ntTSL 5 BASIC13.15□□□□□ -0.31
CTSDP07339 USP36-201ENST00000312010 5234 ntAPPRIS P2 TSL 5 BASIC13.15□□□□□ -0.31
CTSDP07339 HOXB4-201ENST00000332503 3757 ntAPPRIS P1 TSL 1 (best) BASIC13.15□□□□□ -0.31
CTSDP07339 MAMLD1-203ENST00000370401 4854 ntAPPRIS P3 TSL 5 BASIC13.14□□□□□ -0.31
CTSDP07339 HAND2-AS1-202ENST00000502896 5278 ntTSL 1 (best) BASIC13.14□□□□□ -0.31
CTSDP07339 NAA60-229ENST00000575076 2531 ntAPPRIS P1 TSL 1 (best) BASIC13.14□□□□□ -0.31
CTSDP07339 PAK2-201ENST00000327134 6139 ntAPPRIS P1 TSL 2 BASIC13.14□□□□□ -0.31
CTSDP07339 NF2-205ENST00000361452 5884 ntTSL 1 (best) BASIC13.14□□□□□ -0.31
CTSDP07339 OSBPL10-201ENST00000396556 6600 ntAPPRIS P3 TSL 1 (best) BASIC13.14□□□□□ -0.31
CTSDP07339 KRT27-201ENST00000301656 1612 ntAPPRIS P1 TSL 1 (best) BASIC13.14□□□□□ -0.31
CTSDP07339 PTBP1-203ENST00000356948 3598 ntAPPRIS ALT1 TSL 1 (best) BASIC13.14□□□□□ -0.31
CTSDP07339 NR1H3-211ENST00000441012 1637 ntAPPRIS P1 TSL 1 (best) BASIC13.14□□□□□ -0.31
CTSDP07339 GABARAPL1-218ENST00000546017 2294 ntTSL 2 BASIC13.14□□□□□ -0.31
CTSDP07339 ITGBL1-207ENST00000622834 2369 ntTSL 5 BASIC13.14□□□□□ -0.31
CTSDP07339 KCNQ4-201ENST00000347132 4099 ntAPPRIS P2 TSL 1 (best) BASIC13.14□□□□□ -0.31
CTSDP07339 NEIL2-201ENST00000284503 2671 ntAPPRIS P1 TSL 2 BASIC13.14□□□□□ -0.31
CTSDP07339 PHAX-201ENST00000297540 4288 ntAPPRIS P1 TSL 1 (best) BASIC13.14□□□□□ -0.31
CTSDP07339 CSDC2-201ENST00000306149 2777 ntAPPRIS P1 TSL 1 (best) BASIC13.14□□□□□ -0.31
CTSDP07339 C21orf2-201ENST00000325223 1283 ntAPPRIS ALT2 TSL 1 (best) BASIC13.14□□□□□ -0.31
CTSDP07339 KCNAB2-205ENST00000378092 1202 ntAPPRIS ALT1 TSL 5 BASIC13.14□□□□□ -0.31
CTSDP07339 LINC01273-201ENST00000411453 685 ntTSL 2 BASIC13.14□□□□□ -0.31
CTSDP07339 TSPAN4-214ENST00000525201 834 ntTSL 5 BASIC13.14□□□□□ -0.31
CTSDP07339 AF238378.1-201ENST00000526806 358 ntBASIC13.14□□□□□ -0.31
CTSDP07339 FAU-209ENST00000531743 697 ntAPPRIS P1 TSL 1 (best) BASIC13.14□□□□□ -0.31
CTSDP07339 SAXO2-206ENST00000566205 340 ntAPPRIS ALT2 TSL 2 BASIC13.14□□□□□ -0.31
CTSDP07339 PAM16-215ENST00000577031 548 ntTSL 4 BASIC13.14□□□□□ -0.31
CTSDP07339 PPP1R1B-208ENST00000580825 1038 ntAPPRIS P1 TSL 5 BASIC13.14□□□□□ -0.31
CTSDP07339 TMIGD2-203ENST00000600114 489 ntAPPRIS ALT2 TSL 1 (best) BASIC13.14□□□□□ -0.31
CTSDP07339 PLAUR-214ENST00000601723 1205 ntTSL 1 (best) BASIC13.14□□□□□ -0.31
CTSDP07339 SBK3-202ENST00000612221 1270 ntAPPRIS P1 TSL 5 BASIC13.14□□□□□ -0.31
CTSDP07339 ADCY2-201ENST00000338316 6575 ntAPPRIS P1 TSL 1 (best) BASIC13.14□□□□□ -0.31
CTSDP07339 TPGS2-201ENST00000334295 4030 ntAPPRIS P3 TSL 1 (best) BASIC13.14□□□□□ -0.31
CTSDP07339 SHISA9-201ENST00000423335 4043 ntAPPRIS ALT2 TSL 1 (best) BASIC13.14□□□□□ -0.31
CTSDP07339 STXBP6-201ENST00000323944 4132 ntAPPRIS P1 TSL 1 (best) BASIC13.14□□□□□ -0.31
CTSDP07339 MYH11-201ENST00000300036 6029 ntAPPRIS P3 TSL 1 (best) BASIC13.14□□□□□ -0.31
CTSDP07339 AL163636.2-201ENST00000553909 1498 ntAPPRIS P1 TSL 2 BASIC13.14□□□□□ -0.31
CTSDP07339 ALDH2-202ENST00000416293 1572 ntTSL 2 BASIC13.14□□□□□ -0.31
CTSDP07339 NFE2-201ENST00000312156 1658 ntAPPRIS P1 TSL 1 (best) BASIC13.14□□□□□ -0.31
CTSDP07339 C17orf74-201ENST00000333870 1651 ntAPPRIS P1 TSL 1 (best) BASIC13.14□□□□□ -0.31
CTSDP07339 MAGEA12-201ENST00000357916 1664 ntAPPRIS P1 TSL 1 (best) BASIC13.14□□□□□ -0.31
CTSDP07339 C11orf16-202ENST00000525780 1685 ntTSL 1 (best) BASIC13.14□□□□□ -0.31
CTSDP07339 ZNF324-201ENST00000196482 3000 ntAPPRIS P1 TSL 1 (best) BASIC13.14□□□□□ -0.31
CTSDP07339 ANKRD42-208ENST00000531895 1887 ntAPPRIS ALT2 TSL 1 (best) BASIC13.14□□□□□ -0.31
CTSDP07339 WDR45-201ENST00000322995 1444 ntTSL 5 BASIC13.13□□□□□ -0.31
CTSDP07339 MYOZ1-201ENST00000359322 1541 ntAPPRIS P1 TSL 1 (best) BASIC13.13□□□□□ -0.31
CTSDP07339 SLC44A3-206ENST00000527077 1943 ntTSL 2 BASIC13.13□□□□□ -0.31
CTSDP07339 GTF3C5-204ENST00000372108 2110 ntAPPRIS ALT2 TSL 1 (best) BASIC13.13□□□□□ -0.31
CTSDP07339 MTA1-202ENST00000405646 2709 ntAPPRIS ALT2 TSL 5 BASIC13.13□□□□□ -0.31
CTSDP07339 ARHGAP27P1-BPTFP1-KPNA2P3-201ENST00000578492 2732 ntTSL 2 BASIC13.13□□□□□ -0.31
CTSDP07339 PRMT9-201ENST00000322396 3528 ntAPPRIS P1 TSL 1 (best) BASIC13.13□□□□□ -0.31
CTSDP07339 AHCYL2-202ENST00000446544 5026 ntAPPRIS ALT1 TSL 1 (best) BASIC13.13□□□□□ -0.31
CTSDP07339 PAX8-AS1-204ENST00000436293 2687 ntTSL 1 (best) BASIC13.13□□□□□ -0.31
CTSDP07339 SAFB-202ENST00000454510 2650 ntAPPRIS ALT2 TSL 2 BASIC13.13□□□□□ -0.31
CTSDP07339 SPHK2-202ENST00000340932 2492 ntTSL 5 BASIC13.13□□□□□ -0.31
CTSDP07339 MBD1-211ENST00000585595 2179 ntAPPRIS ALT2 TSL 2 BASIC13.13□□□□□ -0.31
CTSDP07339 PGAP3-211ENST00000619169 2094 ntTSL 2 BASIC13.13□□□□□ -0.31
CTSDP07339 XRCC1-202ENST00000543982 1994 ntTSL 2 BASIC13.13□□□□□ -0.31
CTSDP07339 LINC01660-203ENST00000618517 1859 ntTSL 2 BASIC13.13□□□□□ -0.31
CTSDP07339 TSPAN11-201ENST00000261177 5505 ntAPPRIS P1 TSL 1 (best) BASIC13.13□□□□□ -0.31
CTSDP07339 PPM1F-201ENST00000263212 5143 ntAPPRIS P2 TSL 1 (best) BASIC13.13□□□□□ -0.31
CTSDP07339 CRYM-AS1-201ENST00000338573 1661 ntTSL 2 BASIC13.13□□□□□ -0.31
CTSDP07339 PHYHD1-201ENST00000308941 1599 ntTSL 1 (best) BASIC13.13□□□□□ -0.31
CTSDP07339 AC053503.2-201ENST00000420563 1598 ntTSL 2 BASIC13.13□□□□□ -0.31
CTSDP07339 CUL3-202ENST00000344951 6592 ntTSL 2 BASIC13.13□□□□□ -0.31
CTSDP07339 MRPS18A-201ENST00000372116 785 ntTSL 2 BASIC13.13□□□□□ -0.31
CTSDP07339 TCEAL3-203ENST00000372628 1221 ntAPPRIS P1 TSL 5 BASIC13.13□□□□□ -0.31
Retrieved 100 of 98,524 protein–RNA pairs in 63.5 ms