Protein–RNA interactions for Protein: Q9HC56

PCDH9, Protocadherin-9, humanhuman

Predictions only

Length 1,237 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PCDH9Q9HC56 SPAG1-202ENST00000388798 3852 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
PCDH9Q9HC56 HNRNPFP1-201ENST00000391730 1133 ntBASIC16.32■□□□□ 0.2
PCDH9Q9HC56 NME2-201ENST00000393183 568 ntTSL 2 BASIC16.32■□□□□ 0.2
PCDH9Q9HC56 NME1-NME2-202ENST00000393193 1021 ntAPPRIS P2 TSL 2 BASIC16.32■□□□□ 0.2
PCDH9Q9HC56 SPDYE7P-202ENST00000420373 878 ntBASIC16.32■□□□□ 0.2
PCDH9Q9HC56 AL353705.2-201ENST00000428243 662 ntBASIC16.32■□□□□ 0.2
PCDH9Q9HC56 IQCF3-204ENST00000446775 1241 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
PCDH9Q9HC56 KRT8P37-201ENST00000451609 1420 ntBASIC16.32■□□□□ 0.2
PCDH9Q9HC56 CREB3L2-204ENST00000456390 2360 ntTSL 2 BASIC16.32■□□□□ 0.2
PCDH9Q9HC56 CMTM3-203ENST00000460097 1797 ntTSL 2 BASIC16.32■□□□□ 0.2
PCDH9Q9HC56 AC105202.1-204ENST00000502167 1781 ntTSL 1 (best) BASIC16.32■□□□□ 0.2
PCDH9Q9HC56 FLJ42969-201ENST00000514926 1948 ntTSL 2 BASIC16.32■□□□□ 0.2
PCDH9Q9HC56 TMEM5-AS1-201ENST00000546214 563 ntTSL 4 BASIC16.32■□□□□ 0.2
PCDH9Q9HC56 DIO3OS-208ENST00000556120 2473 ntTSL 1 (best) BASIC16.32■□□□□ 0.2
PCDH9Q9HC56 CERNA1-202ENST00000560518 1972 ntTSL 2 BASIC16.32■□□□□ 0.2
PCDH9Q9HC56 AC004449.1-201ENST00000564240 433 ntBASIC16.32■□□□□ 0.2
PCDH9Q9HC56 AC126365.1-201ENST00000578585 1514 ntBASIC16.32■□□□□ 0.2
PCDH9Q9HC56 AC012617.1-203ENST00000590845 439 ntTSL 2 BASIC16.32■□□□□ 0.2
PCDH9Q9HC56 NAPA-AS1-201ENST00000593284 1753 ntTSL 2 BASIC16.32■□□□□ 0.2
PCDH9Q9HC56 COLCA2-204ENST00000610738 975 ntAPPRIS P2 TSL 1 (best) BASIC16.32■□□□□ 0.2
PCDH9Q9HC56 PI16-203ENST00000611814 2083 ntAPPRIS P1 TSL 5 BASIC16.32■□□□□ 0.2
PCDH9Q9HC56 AC243773.2-203ENST00000612281 640 ntTSL 3 BASIC16.32■□□□□ 0.2
PCDH9Q9HC56 AC003101.2-201ENST00000612557 442 ntBASIC16.32■□□□□ 0.2
PCDH9Q9HC56 MIR6080-201ENST00000617359 66 ntBASIC16.32■□□□□ 0.2
PCDH9Q9HC56 TRIM29-221ENST00000627238 510 ntTSL 5 BASIC16.32■□□□□ 0.2
PCDH9Q9HC56 AL157832.3-201ENST00000635764 1005 ntTSL 5 BASIC16.32■□□□□ 0.2
PCDH9Q9HC56 ELP4-219ENST00000639878 1583 ntTSL 5 BASIC16.32■□□□□ 0.2
PCDH9Q9HC56 DHX36-201ENST00000308361 3487 ntTSL 1 (best) BASIC16.32■□□□□ 0.2
PCDH9Q9HC56 AP002414.2-201ENST00000591780 3365 ntBASIC16.32■□□□□ 0.2
PCDH9Q9HC56 TMEM184A-201ENST00000297477 6276 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
PCDH9Q9HC56 PARN-202ENST00000420015 2360 ntTSL 2 BASIC16.31■□□□□ 0.2
PCDH9Q9HC56 PIGW-204ENST00000614443 2312 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
PCDH9Q9HC56 COL18A1-203ENST00000359759 6586 ntAPPRIS ALT2 TSL 5 BASIC16.31■□□□□ 0.2
PCDH9Q9HC56 CRAMP1-202ENST00000397412 7772 ntAPPRIS P1 TSL 5 BASIC16.31■□□□□ 0.2
PCDH9Q9HC56 MPL-202ENST00000413998 1887 ntAPPRIS ALT2 TSL 1 (best) BASIC16.31■□□□□ 0.2
PCDH9Q9HC56 HMOX2-204ENST00000414777 1752 ntAPPRIS P1 TSL 5 BASIC16.31■□□□□ 0.2
PCDH9Q9HC56 ATXN7-213ENST00000538065 6842 ntAPPRIS ALT2 TSL 1 (best) BASIC16.31■□□□□ 0.2
PCDH9Q9HC56 MRGPRX3-201ENST00000396275 1639 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
PCDH9Q9HC56 ATG2A-203ENST00000421419 1481 ntTSL 1 (best) BASIC16.31■□□□□ 0.2
PCDH9Q9HC56 SUPT20H-201ENST00000350612 2739 ntAPPRIS ALT2 TSL 1 (best) BASIC16.31■□□□□ 0.2
PCDH9Q9HC56 ZNF687-201ENST00000324048 5378 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
PCDH9Q9HC56 EDN3-201ENST00000311585 2655 ntAPPRIS ALT2 TSL 1 (best) BASIC16.31■□□□□ 0.2
PCDH9Q9HC56 RHOXF1P3-203ENST00000640298 2668 ntTSL 5 BASIC16.31■□□□□ 0.2
PCDH9Q9HC56 EHHADH-203ENST00000456310 2577 ntTSL 2 BASIC16.31■□□□□ 0.2
PCDH9Q9HC56 DKKL1-201ENST00000221498 1222 ntAPPRIS P2 TSL 1 (best) BASIC16.31■□□□□ 0.2
PCDH9Q9HC56 PSMG3-201ENST00000252329 1007 ntAPPRIS P1 TSL 3 BASIC16.31■□□□□ 0.2
PCDH9Q9HC56 RWDD3-201ENST00000263893 1078 ntTSL 1 (best) BASIC16.31■□□□□ 0.2
PCDH9Q9HC56 GPHB5-201ENST00000314140 393 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
PCDH9Q9HC56 ID3-201ENST00000374561 1251 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
PCDH9Q9HC56 ELFN1-201ENST00000424383 3845 ntAPPRIS P1 TSL 5 BASIC16.31■□□□□ 0.2
PCDH9Q9HC56 AL359764.1-201ENST00000444330 504 ntTSL 3 BASIC16.31■□□□□ 0.2
PCDH9Q9HC56 AL139010.1-201ENST00000454878 894 ntBASIC16.31■□□□□ 0.2
PCDH9Q9HC56 IQSEC2-204ENST00000485377 835 ntTSL 1 (best) BASIC16.31■□□□□ 0.2
PCDH9Q9HC56 PTPRVP-202ENST00000490575 953 ntTSL 5 BASIC16.31■□□□□ 0.2
PCDH9Q9HC56 AC122138.1-201ENST00000508799 646 ntTSL 2 BASIC16.31■□□□□ 0.2
PCDH9Q9HC56 PP7080-203ENST00000510604 859 ntTSL 1 (best) BASIC16.31■□□□□ 0.2
PCDH9Q9HC56 PPP1R14B-203ENST00000542235 920 ntTSL 1 (best) BASIC16.31■□□□□ 0.2
PCDH9Q9HC56 LAMTOR5-208ENST00000614544 846 ntTSL 1 (best) BASIC16.31■□□□□ 0.2
PCDH9Q9HC56 TYSND1-202ENST00000335494 3397 ntTSL 1 (best) BASIC16.31■□□□□ 0.2
PCDH9Q9HC56 FAM156A-206ENST00000612915 2233 ntAPPRIS P2 TSL 5 BASIC16.31■□□□□ 0.2
PCDH9Q9HC56 ADAMTS13-201ENST00000355699 4442 ntAPPRIS ALT2 TSL 1 (best) BASIC16.31■□□□□ 0.2
PCDH9Q9HC56 PCDH10-201ENST00000264360 8489 ntAPPRIS P3 TSL 1 (best) BASIC16.31■□□□□ 0.2
PCDH9Q9HC56 CUX1-211ENST00000546411 4212 ntAPPRIS ALT2 TSL 5 BASIC16.31■□□□□ 0.2
PCDH9Q9HC56 GFAP-225ENST00000638281 2099 ntTSL 5 BASIC16.31■□□□□ 0.2
PCDH9Q9HC56 XRCC1-202ENST00000543982 1994 ntTSL 2 BASIC16.31■□□□□ 0.2
PCDH9Q9HC56 CALR-201ENST00000316448 1903 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
PCDH9Q9HC56 RASA1-201ENST00000274376 3752 ntAPPRIS P3 TSL 1 (best) BASIC16.31■□□□□ 0.2
PCDH9Q9HC56 HERPUD1-201ENST00000300302 1862 ntAPPRIS ALT1 TSL 1 (best) BASIC16.31■□□□□ 0.2
PCDH9Q9HC56 ROBO3-201ENST00000397801 4569 ntAPPRIS P2 TSL 1 (best) BASIC16.31■□□□□ 0.2
PCDH9Q9HC56 ROBO3-220ENST00000538940 4551 ntAPPRIS ALT2 TSL 5 BASIC16.31■□□□□ 0.2
PCDH9Q9HC56 GRSF1-208ENST00000545193 2682 ntTSL 2 BASIC16.31■□□□□ 0.2
PCDH9Q9HC56 AP1S3-206ENST00000443700 1785 ntTSL 1 (best) BASIC16.31■□□□□ 0.2
PCDH9Q9HC56 CDR2L-201ENST00000337231 3536 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
PCDH9Q9HC56 C16orf54-201ENST00000329410 2585 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
PCDH9Q9HC56 CSNK1A1-202ENST00000377843 2559 ntAPPRIS ALT1 TSL 1 (best) BASIC16.31■□□□□ 0.2
PCDH9Q9HC56 CNST-203ENST00000366513 5126 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
PCDH9Q9HC56 CYP27B1-201ENST00000228606 2540 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
PCDH9Q9HC56 NID2-208ENST00000617139 3827 ntTSL 5 BASIC16.3■□□□□ 0.2
PCDH9Q9HC56 ZP3-201ENST00000336517 1483 ntAPPRIS P3 TSL 1 (best) BASIC16.3■□□□□ 0.2
PCDH9Q9HC56 ANKMY1-207ENST00000403283 2874 ntTSL 1 (best) BASIC16.3■□□□□ 0.2
PCDH9Q9HC56 CPEB1-211ENST00000615198 2112 ntAPPRIS P2 TSL 1 (best) BASIC16.3■□□□□ 0.2
PCDH9Q9HC56 GADD45B-201ENST00000215631 1373 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
PCDH9Q9HC56 RASD2-201ENST00000216127 3412 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
PCDH9Q9HC56 DDX1-201ENST00000233084 2739 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
PCDH9Q9HC56 KIF18B-204ENST00000593135 2745 ntAPPRIS P3 TSL 5 BASIC16.3■□□□□ 0.2
PCDH9Q9HC56 KRT18P28-201ENST00000453838 1332 ntBASIC16.3■□□□□ 0.2
PCDH9Q9HC56 PTPN13-204ENST00000436978 8573 ntAPPRIS P4 TSL 5 BASIC16.3■□□□□ 0.2
PCDH9Q9HC56 TRPC6-203ENST00000360497 2631 ntTSL 1 (best) BASIC16.3■□□□□ 0.2
PCDH9Q9HC56 TECR-201ENST00000215567 1171 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
PCDH9Q9HC56 MOSPD3-201ENST00000223054 1053 ntAPPRIS P1 TSL 2 BASIC16.3■□□□□ 0.2
PCDH9Q9HC56 LSM1-201ENST00000311351 1147 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
PCDH9Q9HC56 OR52W1-201ENST00000311352 1114 ntAPPRIS P1 BASIC16.3■□□□□ 0.2
PCDH9Q9HC56 ETNK1-202ENST00000335148 1083 ntTSL 1 (best) BASIC16.3■□□□□ 0.2
PCDH9Q9HC56 LBH-203ENST00000404397 543 ntTSL 4 BASIC16.3■□□□□ 0.2
PCDH9Q9HC56 AL645939.2-201ENST00000427340 991 ntBASIC16.3■□□□□ 0.2
PCDH9Q9HC56 METTL21AP1-201ENST00000438852 635 ntBASIC16.3■□□□□ 0.2
PCDH9Q9HC56 NRSN2-AS1-202ENST00000442637 762 ntTSL 3 BASIC16.3■□□□□ 0.2
PCDH9Q9HC56 AC004865.2-202ENST00000444348 852 ntTSL 3 BASIC16.3■□□□□ 0.2
PCDH9Q9HC56 PHKG1P2-201ENST00000457537 863 ntBASIC16.3■□□□□ 0.2
PCDH9Q9HC56 MLF1-210ENST00000484955 1247 ntTSL 1 (best) BASIC16.3■□□□□ 0.2
Retrieved 100 of 98,524 protein–RNA pairs in 37.9 ms