Protein–RNA interactions for Protein: Q9BRZ2

TRIM56, E3 ubiquitin-protein ligase TRIM56, humanhuman

Known RBP Predictions only

Length 755 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM56Q9BRZ2 SLC35C2-202ENST00000317734 2175 ntTSL 2 BASIC16.17■□□□□ 0.18
TRIM56Q9BRZ2 SELENOF-208ENST00000616787 1835 ntAPPRIS ALT1 TSL 5 BASIC16.17■□□□□ 0.18
TRIM56Q9BRZ2 POU5F1B-201ENST00000465342 5360 ntAPPRIS P1 TSL 3 BASIC16.17■□□□□ 0.18
TRIM56Q9BRZ2 METTL25-201ENST00000248306 2093 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
TRIM56Q9BRZ2 RAB3IP-202ENST00000362025 2055 ntTSL 1 (best) BASIC16.17■□□□□ 0.18
TRIM56Q9BRZ2 C12orf49-201ENST00000261318 8404 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
TRIM56Q9BRZ2 P4HA2-201ENST00000166534 2230 ntAPPRIS P3 TSL 1 (best) BASIC16.17■□□□□ 0.18
TRIM56Q9BRZ2 KRT27-201ENST00000301656 1612 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
TRIM56Q9BRZ2 TMEM86B-201ENST00000327042 1637 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
TRIM56Q9BRZ2 KLHDC2-206ENST00000554589 1641 ntTSL 5 BASIC16.17■□□□□ 0.18
TRIM56Q9BRZ2 UBE2J1-201ENST00000435041 4290 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
TRIM56Q9BRZ2 ATP6AP2-226ENST00000637526 1862 ntAPPRIS ALT2 TSL 5 BASIC16.17■□□□□ 0.18
TRIM56Q9BRZ2 CYP1B1-205ENST00000610745 5250 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
TRIM56Q9BRZ2 CGREF1-201ENST00000260595 1177 ntAPPRIS ALT2 TSL 5 BASIC16.17■□□□□ 0.18
TRIM56Q9BRZ2 CCNL1-201ENST00000295925 549 ntTSL 1 (best) BASIC16.17■□□□□ 0.18
TRIM56Q9BRZ2 TPM2-201ENST00000329305 1018 ntAPPRIS ALT1 TSL 2 BASIC16.17■□□□□ 0.18
TRIM56Q9BRZ2 HCCS-203ENST00000380763 1000 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
TRIM56Q9BRZ2 ITGB2-204ENST00000397846 422 ntTSL 2 BASIC16.17■□□□□ 0.18
TRIM56Q9BRZ2 AL049569.1-201ENST00000446261 636 ntTSL 3 BASIC16.17■□□□□ 0.18
TRIM56Q9BRZ2 ALG1L5P-201ENST00000482043 771 ntBASIC16.17■□□□□ 0.18
TRIM56Q9BRZ2 AGGF1-204ENST00000506806 1142 ntTSL 1 (best) BASIC16.17■□□□□ 0.18
TRIM56Q9BRZ2 HOXC-AS3-202ENST00000513165 533 ntTSL 3 BASIC16.17■□□□□ 0.18
TRIM56Q9BRZ2 AZIN1-AS1-212ENST00000520538 476 ntTSL 3 BASIC16.17■□□□□ 0.18
TRIM56Q9BRZ2 KRT73-AS1-202ENST00000551089 563 ntTSL 4 BASIC16.17■□□□□ 0.18
TRIM56Q9BRZ2 AP000275.2-202ENST00000553001 929 ntTSL 5 BASIC16.17■□□□□ 0.18
TRIM56Q9BRZ2 LINC01225-203ENST00000563550 1244 ntBASIC16.17■□□□□ 0.18
TRIM56Q9BRZ2 AC009053.3-201ENST00000567148 574 ntTSL 4 BASIC16.17■□□□□ 0.18
TRIM56Q9BRZ2 AC006116.8-201ENST00000587004 987 ntTSL 2 BASIC16.17■□□□□ 0.18
TRIM56Q9BRZ2 ZNF773-202ENST00000593916 548 ntTSL 3 BASIC16.17■□□□□ 0.18
TRIM56Q9BRZ2 MTX1-207ENST00000609421 1085 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
TRIM56Q9BRZ2 AC008267.7-201ENST00000624570 1194 ntBASIC16.17■□□□□ 0.18
TRIM56Q9BRZ2 HNRNPH1-250ENST00000630639 123 ntTSL 5 BASIC16.17■□□□□ 0.18
TRIM56Q9BRZ2 AC020934.3-201ENST00000639810 348 ntAPPRIS P1 TSL 3 BASIC16.17■□□□□ 0.18
TRIM56Q9BRZ2 CCAR2-202ENST00000389279 3980 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
TRIM56Q9BRZ2 SLC17A3-202ENST00000360657 1750 ntTSL 2 BASIC16.17■□□□□ 0.18
TRIM56Q9BRZ2 MAGEA12-202ENST00000393869 1761 ntAPPRIS P1 TSL 2 BASIC16.17■□□□□ 0.18
TRIM56Q9BRZ2 CDC42-203ENST00000400259 2274 ntAPPRIS ALT1 TSL 5 BASIC16.17■□□□□ 0.18
TRIM56Q9BRZ2 AC087289.2-201ENST00000587267 1419 ntTSL 1 (best) BASIC16.17■□□□□ 0.18
TRIM56Q9BRZ2 SLC44A3-206ENST00000527077 1943 ntTSL 2 BASIC16.17■□□□□ 0.18
TRIM56Q9BRZ2 AC006486.2-201ENST00000624246 2199 ntBASIC16.17■□□□□ 0.18
TRIM56Q9BRZ2 CPEB2-205ENST00000442003 6797 ntAPPRIS ALT2 TSL 5 BASIC16.17■□□□□ 0.18
TRIM56Q9BRZ2 CHTF18-205ENST00000455171 3172 ntAPPRIS ALT2 TSL 2 BASIC16.17■□□□□ 0.18
TRIM56Q9BRZ2 RAI14-202ENST00000428746 5064 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
TRIM56Q9BRZ2 KMT2E-202ENST00000311117 6874 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
TRIM56Q9BRZ2 AKAP8P1-201ENST00000434743 1349 ntBASIC16.17■□□□□ 0.18
TRIM56Q9BRZ2 NDFIP2-201ENST00000218652 4625 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
TRIM56Q9BRZ2 CRK-201ENST00000300574 3880 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
TRIM56Q9BRZ2 PBX1-215ENST00000559240 2866 ntTSL 5 BASIC16.16■□□□□ 0.18
TRIM56Q9BRZ2 TRAPPC8-201ENST00000283351 6226 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
TRIM56Q9BRZ2 BRF1-205ENST00000440513 2368 ntTSL 2 BASIC16.16■□□□□ 0.18
TRIM56Q9BRZ2 AL109954.1-202ENST00000564051 2148 ntBASIC16.16■□□□□ 0.18
TRIM56Q9BRZ2 KCNG3-202ENST00000394973 3656 ntAPPRIS ALT1 TSL 1 (best) BASIC16.16■□□□□ 0.18
TRIM56Q9BRZ2 OSBP2-201ENST00000332585 4340 ntAPPRIS P3 TSL 1 (best) BASIC16.16■□□□□ 0.18
TRIM56Q9BRZ2 RNASE4-203ENST00000555835 2520 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
TRIM56Q9BRZ2 CD14-202ENST00000401743 1648 ntAPPRIS P1 TSL 3 BASIC16.16■□□□□ 0.18
TRIM56Q9BRZ2 CEP63-212ENST00000513612 2903 ntAPPRIS P3 TSL 2 BASIC16.16■□□□□ 0.18
TRIM56Q9BRZ2 ADCY2-201ENST00000338316 6575 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
TRIM56Q9BRZ2 CDH20-203ENST00000538374 2683 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
TRIM56Q9BRZ2 FNDC8-201ENST00000158009 1388 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
TRIM56Q9BRZ2 MBD1-205ENST00000353909 2820 ntTSL 1 (best) BASIC16.16■□□□□ 0.18
TRIM56Q9BRZ2 DDX1-202ENST00000381341 2817 ntAPPRIS P1 TSL 5 BASIC16.16■□□□□ 0.18
TRIM56Q9BRZ2 HNRNPF-201ENST00000337970 2186 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
TRIM56Q9BRZ2 ABCA7-201ENST00000263094 6816 ntAPPRIS P2 TSL 5 BASIC16.16■□□□□ 0.18
TRIM56Q9BRZ2 KLK10-202ENST00000358789 1508 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
TRIM56Q9BRZ2 PSMD5-203ENST00000373904 1538 ntTSL 2 BASIC16.16■□□□□ 0.18
TRIM56Q9BRZ2 POP4-201ENST00000221770 2321 ntTSL 1 (best) BASIC16.16■□□□□ 0.18
TRIM56Q9BRZ2 RABGAP1L-201ENST00000251507 2899 ntAPPRIS P1 TSL 2 BASIC16.16■□□□□ 0.18
TRIM56Q9BRZ2 COX11-201ENST00000299335 2497 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
TRIM56Q9BRZ2 CCDC12-201ENST00000292314 1017 ntTSL 5 BASIC16.16■□□□□ 0.18
TRIM56Q9BRZ2 KRTCAP2-201ENST00000295682 552 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
TRIM56Q9BRZ2 BAX-203ENST00000354470 433 ntTSL 1 (best) BASIC16.16■□□□□ 0.18
TRIM56Q9BRZ2 AL390729.1-201ENST00000456651 587 ntTSL 2 BASIC16.16■□□□□ 0.18
TRIM56Q9BRZ2 AC092183.1-201ENST00000469884 875 ntBASIC16.16■□□□□ 0.18
TRIM56Q9BRZ2 AC079140.1-201ENST00000508039 487 ntBASIC16.16■□□□□ 0.18
TRIM56Q9BRZ2 LINC01485-205ENST00000523617 586 ntTSL 2 BASIC16.16■□□□□ 0.18
TRIM56Q9BRZ2 RAB1B-202ENST00000527397 991 ntTSL 3 BASIC16.16■□□□□ 0.18
TRIM56Q9BRZ2 RNF34-208ENST00000555076 593 ntTSL 3 BASIC16.16■□□□□ 0.18
TRIM56Q9BRZ2 COQ9-214ENST00000567933 882 ntTSL 3 BASIC16.16■□□□□ 0.18
TRIM56Q9BRZ2 BORCS8-206ENST00000585679 801 ntTSL 3 BASIC16.16■□□□□ 0.18
TRIM56Q9BRZ2 PODN-201ENST00000312553 3010 ntAPPRIS P3 TSL 1 (best) BASIC16.16■□□□□ 0.18
TRIM56Q9BRZ2 TBRG4-201ENST00000258770 2243 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
TRIM56Q9BRZ2 ABHD14B-201ENST00000315877 2236 ntTSL 5 BASIC16.16■□□□□ 0.18
TRIM56Q9BRZ2 ASAH1-210ENST00000520781 2245 ntTSL 2 BASIC16.16■□□□□ 0.18
TRIM56Q9BRZ2 ABCC10-201ENST00000244533 5088 ntAPPRIS P3 TSL 1 (best) BASIC16.16■□□□□ 0.18
TRIM56Q9BRZ2 RBFOX3-211ENST00000583458 2934 ntAPPRIS ALT2 TSL 5 BASIC16.16■□□□□ 0.18
TRIM56Q9BRZ2 SLC18A1-207ENST00000519026 1980 ntTSL 5 BASIC16.16■□□□□ 0.18
TRIM56Q9BRZ2 NANOS1-202ENST00000425699 4017 ntAPPRIS P2 BASIC16.16■□□□□ 0.18
TRIM56Q9BRZ2 SYT13-201ENST00000020926 5144 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
TRIM56Q9BRZ2 FKBP5-201ENST00000357266 3772 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
TRIM56Q9BRZ2 RBM14-201ENST00000310137 2828 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
TRIM56Q9BRZ2 IRF3-217ENST00000597198 1741 ntAPPRIS P1 TSL 2 BASIC16.16■□□□□ 0.18
TRIM56Q9BRZ2 STEAP3-202ENST00000393107 1871 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
TRIM56Q9BRZ2 EIF1B-AS1-206ENST00000631175 1303 ntTSL 1 (best) BASIC16.16■□□□□ 0.18
TRIM56Q9BRZ2 NR2E3-204ENST00000621736 2032 ntTSL 2 BASIC16.16■□□□□ 0.18
TRIM56Q9BRZ2 KIAA1211-206ENST00000541073 4117 ntAPPRIS ALT2 TSL 1 (best) BASIC16.16■□□□□ 0.18
TRIM56Q9BRZ2 MEF2D-201ENST00000348159 5965 ntAPPRIS P3 TSL 1 (best) BASIC16.16■□□□□ 0.18
TRIM56Q9BRZ2 AC099063.4-201ENST00000641099 1602 ntBASIC16.16■□□□□ 0.18
TRIM56Q9BRZ2 EPS8L2-218ENST00000530636 2469 ntAPPRIS P2 TSL 1 (best) BASIC16.16■□□□□ 0.18
TRIM56Q9BRZ2 KIRREL1-202ENST00000360089 3304 ntTSL 1 (best) BASIC16.16■□□□□ 0.18
TRIM56Q9BRZ2 HGNC:18790-202ENST00000421177 4172 ntAPPRIS P1 TSL 5 BASIC16.16■□□□□ 0.18
Retrieved 100 of 98,524 protein–RNA pairs in 51.6 ms