Protein–RNA interactions for Protein: Q6A163

KRT39, Keratin, type I cytoskeletal 39, humanhuman

Predictions only

Length 491 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
KRT39Q6A163 CALR-201ENST00000316448 1903 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
KRT39Q6A163 MGME1-202ENST00000377709 1936 ntTSL 2 BASIC17.04■□□□□ 0.32
KRT39Q6A163 AC136759.1-203ENST00000527477 2196 ntTSL 1 (best) BASIC17.04■□□□□ 0.32
KRT39Q6A163 STXBP5-207ENST00000546097 2160 ntTSL 1 (best) BASIC17.04■□□□□ 0.32
KRT39Q6A163 PDE1C-202ENST00000396182 2420 ntTSL 1 (best) BASIC17.04■□□□□ 0.32
KRT39Q6A163 GHDC-201ENST00000301671 2650 ntAPPRIS P1 TSL 2 BASIC17.04■□□□□ 0.32
KRT39Q6A163 NMRAL1-201ENST00000283429 1376 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
KRT39Q6A163 ZFPL1-201ENST00000294258 1371 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
KRT39Q6A163 GDPD3-202ENST00000406256 1397 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
KRT39Q6A163 PPT1-215ENST00000641471 2368 ntBASIC17.03■□□□□ 0.32
KRT39Q6A163 PCDHGB2-202ENST00000622527 2588 ntAPPRIS P1 BASIC17.03■□□□□ 0.32
KRT39Q6A163 ATP5B-201ENST00000262030 1839 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
KRT39Q6A163 RBM33-205ENST00000392759 1580 ntTSL 5 BASIC17.03■□□□□ 0.32
KRT39Q6A163 AC008770.3-201ENST00000590798 1562 ntAPPRIS P1 TSL 2 BASIC17.03■□□□□ 0.32
KRT39Q6A163 RRP1-207ENST00000497547 3022 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
KRT39Q6A163 MGAT1-201ENST00000307826 2761 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
KRT39Q6A163 DLGAP4-205ENST00000401952 4881 ntAPPRIS P4 TSL 5 BASIC17.03■□□□□ 0.32
KRT39Q6A163 PPP1R16B-201ENST00000299824 6251 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
KRT39Q6A163 TBRG4-201ENST00000258770 2243 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
KRT39Q6A163 MRPL43-201ENST00000299179 747 ntTSL 1 (best) BASIC17.03■□□□□ 0.32
KRT39Q6A163 POP5-202ENST00000357500 801 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
KRT39Q6A163 POLR3GL-202ENST00000369314 1165 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
KRT39Q6A163 SELENOM-202ENST00000402395 1054 ntAPPRIS P2 TSL 1 (best) BASIC17.03■□□□□ 0.32
KRT39Q6A163 RAD18-204ENST00000418463 563 ntTSL 4 BASIC17.03■□□□□ 0.32
KRT39Q6A163 RAD18-205ENST00000421052 582 ntTSL 3 BASIC17.03■□□□□ 0.32
KRT39Q6A163 AL109811.2-201ENST00000447600 487 ntTSL 3 BASIC17.03■□□□□ 0.32
KRT39Q6A163 DUSP13-205ENST00000464872 684 ntTSL 3 BASIC17.03■□□□□ 0.32
KRT39Q6A163 SLED1-202ENST00000512051 380 ntBASIC17.03■□□□□ 0.32
KRT39Q6A163 AC004803.1-204ENST00000543290 512 ntTSL 4 BASIC17.03■□□□□ 0.32
KRT39Q6A163 AL161757.4-201ENST00000554149 621 ntTSL 3 BASIC17.03■□□□□ 0.32
KRT39Q6A163 DUSP13-212ENST00000605915 1015 ntTSL 5 BASIC17.03■□□□□ 0.32
KRT39Q6A163 SWI5-206ENST00000608796 906 ntAPPRIS ALT2 TSL 1 (best) BASIC17.03■□□□□ 0.32
KRT39Q6A163 AL390754.1-201ENST00000619088 582 ntBASIC17.03■□□□□ 0.32
KRT39Q6A163 HADH-212ENST00000638621 741 ntTSL 5 BASIC17.03■□□□□ 0.32
KRT39Q6A163 AL109936.8-201ENST00000641772 604 ntBASIC17.03■□□□□ 0.32
KRT39Q6A163 FBXO44-204ENST00000376762 1734 ntTSL 1 (best) BASIC17.03■□□□□ 0.32
KRT39Q6A163 HNRNPF-201ENST00000337970 2186 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
KRT39Q6A163 STT3B-201ENST00000295770 4248 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
KRT39Q6A163 AC073347.1-201ENST00000421633 2643 ntBASIC17.03■□□□□ 0.32
KRT39Q6A163 NR1H3-235ENST00000616973 1919 ntTSL 1 (best) BASIC17.03■□□□□ 0.32
KRT39Q6A163 ALOX15B-204ENST00000572022 2396 ntTSL 2 BASIC17.03■□□□□ 0.32
KRT39Q6A163 TMEM57-202ENST00000399766 3294 ntTSL 1 (best) BASIC17.03■□□□□ 0.32
KRT39Q6A163 STAC-201ENST00000273183 3227 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
KRT39Q6A163 GSN-206ENST00000394353 2311 ntTSL 2 BASIC17.03■□□□□ 0.32
KRT39Q6A163 TGFB1I1-203ENST00000394863 1898 ntAPPRIS ALT1 TSL 1 (best) BASIC17.03■□□□□ 0.32
KRT39Q6A163 FOXH1-201ENST00000377317 2503 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
KRT39Q6A163 AMHR2-202ENST00000379791 1437 ntTSL 1 (best) BASIC17.03■□□□□ 0.32
KRT39Q6A163 ANKRD20A5P-207ENST00000581935 2089 ntTSL 2 BASIC17.03■□□□□ 0.32
KRT39Q6A163 CFLAR-205ENST00000342795 1613 ntTSL 5 BASIC17.03■□□□□ 0.32
KRT39Q6A163 CHRNG-202ENST00000389494 2262 ntAPPRIS P1 TSL 5 BASIC17.03■□□□□ 0.32
KRT39Q6A163 CDC42-203ENST00000400259 2274 ntAPPRIS ALT1 TSL 5 BASIC17.03■□□□□ 0.32
KRT39Q6A163 THOC5-203ENST00000397872 2676 ntAPPRIS P1 TSL 5 BASIC17.03■□□□□ 0.32
KRT39Q6A163 AL355493.2-201ENST00000568270 1395 ntTSL 1 (best) BASIC17.02■□□□□ 0.32
KRT39Q6A163 B3GLCT-201ENST00000343307 4254 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.32
KRT39Q6A163 FOXRED1-201ENST00000263578 1970 ntAPPRIS P2 TSL 1 (best) BASIC17.02■□□□□ 0.32
KRT39Q6A163 SLC18A1-207ENST00000519026 1980 ntTSL 5 BASIC17.02■□□□□ 0.32
KRT39Q6A163 STAU2-219ENST00000522509 2173 ntTSL 2 BASIC17.02■□□□□ 0.32
KRT39Q6A163 TUBGCP2-203ENST00000368563 4218 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.32
KRT39Q6A163 TMEM184A-201ENST00000297477 6276 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.32
KRT39Q6A163 TLE4-204ENST00000376537 2793 ntTSL 1 (best) BASIC17.02■□□□□ 0.32
KRT39Q6A163 NCKIPSD-201ENST00000294129 2989 ntAPPRIS P3 TSL 1 (best) BASIC17.02■□□□□ 0.32
KRT39Q6A163 BCAR3-201ENST00000260502 3171 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.32
KRT39Q6A163 MYCBPAP-201ENST00000323776 3186 ntAPPRIS P2 TSL 1 (best) BASIC17.02■□□□□ 0.32
KRT39Q6A163 GREB1-205ENST00000389825 1315 ntTSL 1 (best) BASIC17.02■□□□□ 0.32
KRT39Q6A163 TBL3-205ENST00000568546 6803 ntAPPRIS P2 TSL 1 (best) BASIC17.02■□□□□ 0.32
KRT39Q6A163 LINC02495-201ENST00000508601 4167 ntTSL 2 BASIC17.02■□□□□ 0.32
KRT39Q6A163 MANBAL-204ENST00000397151 1503 ntAPPRIS P1 TSL 3 BASIC17.02■□□□□ 0.32
KRT39Q6A163 MANBAL-205ENST00000397152 1539 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.32
KRT39Q6A163 NIPAL3-204ENST00000374399 1711 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.32
KRT39Q6A163 SLC47A1-203ENST00000436810 1719 ntTSL 2 BASIC17.02■□□□□ 0.32
KRT39Q6A163 GMPR2-231ENST00000620807 1910 ntTSL 5 BASIC17.02■□□□□ 0.32
KRT39Q6A163 FES-204ENST00000414248 2327 ntTSL 2 BASIC17.02■□□□□ 0.32
KRT39Q6A163 ZXDA-201ENST00000358697 4113 ntAPPRIS P1 BASIC17.02■□□□□ 0.32
KRT39Q6A163 NFATC4-213ENST00000554591 2893 ntAPPRIS ALT2 TSL 1 (best) BASIC17.02■□□□□ 0.32
KRT39Q6A163 ABTB1-206ENST00000468137 2065 ntTSL 1 (best) BASIC17.02■□□□□ 0.32
KRT39Q6A163 FCRLB-204ENST00000367946 1152 ntTSL 1 (best) BASIC17.02■□□□□ 0.32
KRT39Q6A163 C4orf3-202ENST00000504110 667 ntAPPRIS P3 TSL 1 (best) BASIC17.02■□□□□ 0.32
KRT39Q6A163 MTFR1L-218ENST00000526894 733 ntTSL 4 BASIC17.02■□□□□ 0.32
KRT39Q6A163 AL583722.3-202ENST00000554954 486 ntTSL 4 BASIC17.02■□□□□ 0.32
KRT39Q6A163 YPEL2-205ENST00000585166 881 ntAPPRIS P1 TSL 5 BASIC17.02■□□□□ 0.32
KRT39Q6A163 B3GALNT1-203ENST00000392781 3606 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.32
KRT39Q6A163 RASD2-201ENST00000216127 3412 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.32
KRT39Q6A163 API5-202ENST00000420461 2009 ntTSL 2 BASIC17.02■□□□□ 0.32
KRT39Q6A163 DHX36-202ENST00000329463 2985 ntAPPRIS ALT2 TSL 1 (best) BASIC17.02■□□□□ 0.31
KRT39Q6A163 EPHX2-202ENST00000517536 1600 ntTSL 5 BASIC17.02■□□□□ 0.31
KRT39Q6A163 GPC1-201ENST00000264039 3713 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.31
KRT39Q6A163 FDPS-202ENST00000368356 1431 ntAPPRIS P3 TSL 2 BASIC17.02■□□□□ 0.31
KRT39Q6A163 DNAJC16-201ENST00000375838 2357 ntTSL 5 BASIC17.02■□□□□ 0.31
KRT39Q6A163 CACNA1G-201ENST00000352832 7848 ntAPPRIS ALT2 TSL 1 (best) BASIC17.02■□□□□ 0.31
KRT39Q6A163 DUSP6-202ENST00000308385 1959 ntTSL 1 (best) BASIC17.02■□□□□ 0.31
KRT39Q6A163 STK39-201ENST00000355999 3820 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.31
KRT39Q6A163 NKIRAS1-201ENST00000388759 2335 ntAPPRIS P2 TSL 3 BASIC17.02■□□□□ 0.31
KRT39Q6A163 TMEM132D-AS2-201ENST00000542578 1568 ntTSL 1 (best) BASIC17.02■□□□□ 0.31
KRT39Q6A163 HPCAL1-202ENST00000381765 1904 ntAPPRIS P1 TSL 2 BASIC17.02■□□□□ 0.31
KRT39Q6A163 PDGFRL-203ENST00000541323 1905 ntAPPRIS P1 TSL 2 BASIC17.02■□□□□ 0.31
KRT39Q6A163 CCDC127-201ENST00000296824 9342 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
KRT39Q6A163 C12orf42-201ENST00000378113 1513 ntAPPRIS P2 TSL 5 BASIC17.01■□□□□ 0.31
KRT39Q6A163 CDPF1-204ENST00000404744 1541 ntTSL 3 BASIC17.01■□□□□ 0.31
KRT39Q6A163 AAMP-201ENST00000248450 1886 ntAPPRIS P3 TSL 1 (best) BASIC17.01■□□□□ 0.31
KRT39Q6A163 CPSF1-213ENST00000620219 4462 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
Retrieved 100 of 98,524 protein–RNA pairs in 39.1 ms