Protein–RNA interactions for Protein: P84243

H3F3A, Histone H3.3, humanhuman

Predictions only

Length 136 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
H3F3AP84243 LYAR-201ENST00000343470 1569 ntAPPRIS P2 TSL 1 (best) BASIC14.13□□□□□ -0.15
H3F3AP84243 MXI1-202ENST00000332674 3470 ntAPPRIS P4 TSL 1 (best) BASIC14.13□□□□□ -0.15
H3F3AP84243 SUN2-203ENST00000406622 2725 ntAPPRIS P1 TSL 2 BASIC14.13□□□□□ -0.15
H3F3AP84243 CCDC144A-202ENST00000340621 2214 ntTSL 2 BASIC14.13□□□□□ -0.15
H3F3AP84243 TBX5-203ENST00000405440 2203 ntAPPRIS P1 TSL 1 (best) BASIC14.13□□□□□ -0.15
H3F3AP84243 Z99756.1-201ENST00000458463 1951 ntTSL 1 (best) BASIC14.13□□□□□ -0.15
H3F3AP84243 HDAC11-214ENST00000446613 2875 ntTSL 5 BASIC14.12□□□□□ -0.15
H3F3AP84243 SLC16A3-211ENST00000581287 4830 ntAPPRIS P1 TSL 1 (best) BASIC14.12□□□□□ -0.15
H3F3AP84243 PDE3A-201ENST00000359062 7576 ntAPPRIS P1 TSL 1 (best) BASIC14.12□□□□□ -0.15
H3F3AP84243 SLC46A2-201ENST00000374228 2502 ntAPPRIS P1 TSL 1 (best) BASIC14.12□□□□□ -0.15
H3F3AP84243 DISC1-209ENST00000439617 7059 ntAPPRIS ALT2 TSL 5 BASIC14.12□□□□□ -0.15
H3F3AP84243 SERTM1-201ENST00000315190 3207 ntAPPRIS P1 TSL 1 (best) BASIC14.12□□□□□ -0.15
H3F3AP84243 ELOF1-203ENST00000586683 2154 ntTSL 2 BASIC14.12□□□□□ -0.15
H3F3AP84243 CNP-201ENST00000393888 2583 ntTSL 1 (best) BASIC14.12□□□□□ -0.15
H3F3AP84243 C21orf33-202ENST00000348499 1506 ntTSL 1 (best) BASIC14.12□□□□□ -0.15
H3F3AP84243 AP001122.1-202ENST00000501648 1916 ntTSL 2 BASIC14.12□□□□□ -0.15
H3F3AP84243 FBLN1-202ENST00000327858 2896 ntAPPRIS P1 TSL 1 (best) BASIC14.12□□□□□ -0.15
H3F3AP84243 CABP5-201ENST00000293255 1257 ntAPPRIS P1 TSL 1 (best) BASIC14.12□□□□□ -0.15
H3F3AP84243 AGER-204ENST00000375067 1250 ntTSL 1 (best) BASIC14.12□□□□□ -0.15
H3F3AP84243 TMEM239-202ENST00000380585 571 ntAPPRIS P1 TSL 1 (best) BASIC14.12□□□□□ -0.15
H3F3AP84243 HRAS-202ENST00000397594 1099 ntTSL 2 BASIC14.12□□□□□ -0.15
H3F3AP84243 AL356441.1-201ENST00000452618 492 ntTSL 3 BASIC14.12□□□□□ -0.15
H3F3AP84243 PTGES3-205ENST00000456859 957 ntTSL 2 BASIC14.12□□□□□ -0.15
H3F3AP84243 CMC2-214ENST00000565925 640 ntTSL 5 BASIC14.12□□□□□ -0.15
H3F3AP84243 TMEM101-204ENST00000587529 965 ntTSL 2 BASIC14.12□□□□□ -0.15
H3F3AP84243 AC141424.1-203ENST00000599026 887 ntTSL 5 BASIC14.12□□□□□ -0.15
H3F3AP84243 5S_rRNA.22-201ENST00000614916 106 ntBASIC14.12□□□□□ -0.15
H3F3AP84243 CICP13-201ENST00000422015 2789 ntBASIC14.12□□□□□ -0.15
H3F3AP84243 ADAM9-206ENST00000481513 2387 ntTSL 2 BASIC14.12□□□□□ -0.15
H3F3AP84243 LMF1-AS1-202ENST00000569574 1408 ntTSL 3 BASIC14.12□□□□□ -0.15
H3F3AP84243 NEO1-206ENST00000558964 4441 ntAPPRIS ALT2 TSL 1 (best) BASIC14.12□□□□□ -0.15
H3F3AP84243 APAF1-203ENST00000359972 7029 ntAPPRIS ALT1 TSL 1 (best) BASIC14.12□□□□□ -0.15
H3F3AP84243 UGCG-201ENST00000374279 4007 ntAPPRIS P1 TSL 1 (best) BASIC14.12□□□□□ -0.15
H3F3AP84243 CNKSR1-202ENST00000374253 2538 ntAPPRIS ALT2 TSL 1 (best) BASIC14.12□□□□□ -0.15
H3F3AP84243 YY1AP1-210ENST00000368339 3073 ntAPPRIS ALT2 TSL 2 BASIC14.12□□□□□ -0.15
H3F3AP84243 GSK3B-201ENST00000264235 7711 ntAPPRIS ALT1 TSL 1 (best) BASIC14.12□□□□□ -0.15
H3F3AP84243 PGBD2-201ENST00000329291 2136 ntAPPRIS P4 TSL 1 (best) BASIC14.12□□□□□ -0.15
H3F3AP84243 AC092850.2-201ENST00000623821 2697 ntBASIC14.12□□□□□ -0.15
H3F3AP84243 MMADHC-203ENST00000428879 1726 ntAPPRIS P1 TSL 2 BASIC14.12□□□□□ -0.15
H3F3AP84243 TRIM46-209ENST00000543729 1703 ntTSL 5 BASIC14.12□□□□□ -0.15
H3F3AP84243 DENND5B-202ENST00000389082 9470 ntAPPRIS P1 TSL 5 BASIC14.12□□□□□ -0.15
H3F3AP84243 PAUPAR-201ENST00000630360 2965 ntBASIC14.12□□□□□ -0.15
H3F3AP84243 NIPA2-204ENST00000398014 3130 ntAPPRIS P1 TSL 5 BASIC14.12□□□□□ -0.15
H3F3AP84243 DGKZ-202ENST00000343674 3816 ntAPPRIS P3 TSL 2 BASIC14.12□□□□□ -0.15
H3F3AP84243 TMED1-201ENST00000214869 1340 ntAPPRIS P1 TSL 1 (best) BASIC14.12□□□□□ -0.15
H3F3AP84243 FAM76B-201ENST00000358780 3952 ntAPPRIS P3 TSL 1 (best) BASIC14.12□□□□□ -0.15
H3F3AP84243 TOM1-201ENST00000382034 1300 ntTSL 5 BASIC14.12□□□□□ -0.15
H3F3AP84243 CD8A-201ENST00000283635 2873 ntAPPRIS P4 TSL 1 (best) BASIC14.12□□□□□ -0.15
H3F3AP84243 RAPSN-202ENST00000352508 1452 ntTSL 1 (best) BASIC14.12□□□□□ -0.15
H3F3AP84243 TK2-203ENST00000451102 3738 ntAPPRIS ALT2 TSL 1 (best) BASIC14.12□□□□□ -0.15
H3F3AP84243 AC026412.1-203ENST00000507841 2338 ntTSL 1 (best) BASIC14.12□□□□□ -0.15
H3F3AP84243 AMT-233ENST00000636522 1620 ntTSL 2 BASIC14.12□□□□□ -0.15
H3F3AP84243 RTN3-205ENST00000356000 2645 ntTSL 2 BASIC14.11□□□□□ -0.15
H3F3AP84243 POLR1D-212ENST00000630983 1931 ntTSL 5 BASIC14.11□□□□□ -0.15
H3F3AP84243 AC105250.1-201ENST00000509378 2057 ntBASIC14.11□□□□□ -0.15
H3F3AP84243 UPK3B-202ENST00000334348 2373 ntAPPRIS ALT2 TSL 2 BASIC14.11□□□□□ -0.15
H3F3AP84243 AC105917.1-201ENST00000506637 2539 ntBASIC14.11□□□□□ -0.15
H3F3AP84243 GLS2-217ENST00000623608 2518 ntTSL 1 (best) BASIC14.11□□□□□ -0.15
H3F3AP84243 VPS26A-201ENST00000263559 2697 ntAPPRIS P1 TSL 1 (best) BASIC14.11□□□□□ -0.15
H3F3AP84243 UNC119B-201ENST00000344651 4404 ntAPPRIS P1 TSL 2 BASIC14.11□□□□□ -0.15
H3F3AP84243 ALOX15-205ENST00000574640 2422 ntTSL 2 BASIC14.11□□□□□ -0.15
H3F3AP84243 ZNF799-201ENST00000419318 3036 ntTSL 2 BASIC14.11□□□□□ -0.15
H3F3AP84243 C16orf58-201ENST00000327237 2793 ntAPPRIS P2 TSL 1 (best) BASIC14.11□□□□□ -0.15
H3F3AP84243 CORO6-201ENST00000345068 2603 ntAPPRIS P2 TSL 5 BASIC14.11□□□□□ -0.15
H3F3AP84243 CKS1B-202ENST00000368436 820 ntTSL 2 BASIC14.11□□□□□ -0.15
H3F3AP84243 SFTPA2-201ENST00000372325 2189 ntAPPRIS P1 TSL 1 (best) BASIC14.11□□□□□ -0.15
H3F3AP84243 CCDC107-204ENST00000378409 1173 ntAPPRIS ALT2 TSL 1 (best) BASIC14.11□□□□□ -0.15
H3F3AP84243 RBM33-205ENST00000392759 1580 ntTSL 5 BASIC14.11□□□□□ -0.15
H3F3AP84243 RBM43-202ENST00000409092 579 ntAPPRIS ALT2 TSL 2 BASIC14.11□□□□□ -0.15
H3F3AP84243 TOMM22P5-201ENST00000416399 439 ntBASIC14.11□□□□□ -0.15
H3F3AP84243 SCRN1-205ENST00000425819 1552 ntTSL 2 BASIC14.11□□□□□ -0.15
H3F3AP84243 AC008278.1-201ENST00000431117 568 ntTSL 4 BASIC14.11□□□□□ -0.15
H3F3AP84243 PMS1-212ENST00000432292 3234 ntTSL 2 BASIC14.11□□□□□ -0.15
H3F3AP84243 PNPO-202ENST00000434554 1196 ntTSL 2 BASIC14.11□□□□□ -0.15
H3F3AP84243 USP40-206ENST00000443711 628 ntTSL 2 BASIC14.11□□□□□ -0.15
H3F3AP84243 AL109811.2-201ENST00000447600 487 ntTSL 3 BASIC14.11□□□□□ -0.15
H3F3AP84243 MUTYH-209ENST00000448481 1706 ntTSL 1 (best) BASIC14.11□□□□□ -0.15
H3F3AP84243 AL512638.1-201ENST00000457493 794 ntBASIC14.11□□□□□ -0.15
H3F3AP84243 FAU-205ENST00000527548 538 ntAPPRIS P1 TSL 5 BASIC14.11□□□□□ -0.15
H3F3AP84243 AP000943.3-201ENST00000536540 954 ntTSL 3 BASIC14.11□□□□□ -0.15
H3F3AP84243 ARL6IP1-202ENST00000546206 1107 ntTSL 2 BASIC14.11□□□□□ -0.15
H3F3AP84243 AC092337.1-201ENST00000568699 1129 ntBASIC14.11□□□□□ -0.15
H3F3AP84243 AC040162.1-202ENST00000573493 573 ntAPPRIS P1 TSL 3 BASIC14.11□□□□□ -0.15
H3F3AP84243 CCR7-203ENST00000579344 1874 ntTSL 1 (best) BASIC14.11□□□□□ -0.15
H3F3AP84243 YPEL2-205ENST00000585166 881 ntAPPRIS P1 TSL 5 BASIC14.11□□□□□ -0.15
H3F3AP84243 INO80C-206ENST00000586489 594 ntTSL 3 BASIC14.11□□□□□ -0.15
H3F3AP84243 LIM2-202ENST00000596399 861 ntAPPRIS P1 TSL 1 (best) BASIC14.11□□□□□ -0.15
H3F3AP84243 SYDE1-204ENST00000600440 3058 ntTSL 1 (best) BASIC14.11□□□□□ -0.15
H3F3AP84243 AC008738.7-201ENST00000609744 511 ntBASIC14.11□□□□□ -0.15
H3F3AP84243 AC092198.1-201ENST00000447651 2691 ntTSL 2 BASIC14.11□□□□□ -0.15
H3F3AP84243 SLC3A2-204ENST00000377891 2222 ntTSL 2 BASIC14.11□□□□□ -0.15
H3F3AP84243 LINC00668-206ENST00000581725 1902 ntTSL 2 BASIC14.11□□□□□ -0.15
H3F3AP84243 EIF4A1-201ENST00000293831 1756 ntAPPRIS P1 TSL 1 (best) BASIC14.11□□□□□ -0.15
H3F3AP84243 C9orf78-201ENST00000372447 1795 ntAPPRIS P1 TSL 1 (best) BASIC14.11□□□□□ -0.15
H3F3AP84243 ASXL1-210ENST00000613218 7038 ntAPPRIS ALT2 TSL 5 BASIC14.11□□□□□ -0.15
H3F3AP84243 MSI2-206ENST00000579180 1635 ntTSL 1 (best) BASIC14.11□□□□□ -0.15
H3F3AP84243 LINC00554-201ENST00000564841 3011 ntBASIC14.11□□□□□ -0.15
H3F3AP84243 CPA1-201ENST00000011292 1487 ntAPPRIS P1 TSL 1 (best) BASIC14.11□□□□□ -0.15
H3F3AP84243 AKTIP-202ENST00000394657 2426 ntAPPRIS P3 TSL 2 BASIC14.11□□□□□ -0.15
H3F3AP84243 RAI2-206ENST00000545871 2421 ntAPPRIS P1 TSL 4 BASIC14.11□□□□□ -0.15
Retrieved 100 of 98,524 protein–RNA pairs in 48.6 ms