Protein–RNA interactions for Protein: P54753

EPHB3, Ephrin type-B receptor 3, humanhuman

Predictions only

Length 998 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
EPHB3P54753 PDE6D-201ENST00000287600 1175 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
EPHB3P54753 GBGT1-202ENST00000372038 847 ntTSL 3 BASIC16.41■□□□□ 0.22
EPHB3P54753 THEMIS2-204ENST00000373927 1082 ntTSL 1 (best) BASIC16.41■□□□□ 0.22
EPHB3P54753 NDUFC1-203ENST00000394228 761 ntAPPRIS P1 TSL 2 BASIC16.41■□□□□ 0.22
EPHB3P54753 STX1A-203ENST00000395155 783 ntTSL 2 BASIC16.41■□□□□ 0.22
EPHB3P54753 IFITM3-201ENST00000399808 808 ntAPPRIS P2 TSL 1 (best) BASIC16.41■□□□□ 0.22
EPHB3P54753 SUN1-204ENST00000403868 978 ntTSL 2 BASIC16.41■□□□□ 0.22
EPHB3P54753 AL450998.2-201ENST00000418525 639 ntTSL 3 BASIC16.41■□□□□ 0.22
EPHB3P54753 LINC00116-202ENST00000426713 461 ntAPPRIS ALT2 TSL 3 BASIC16.41■□□□□ 0.22
EPHB3P54753 AC012441.1-201ENST00000446669 685 ntBASIC16.41■□□□□ 0.22
EPHB3P54753 ROPN1-207ENST00000484329 566 ntTSL 3 BASIC16.41■□□□□ 0.22
EPHB3P54753 AC135178.3-201ENST00000583963 531 ntTSL 4 BASIC16.41■□□□□ 0.22
EPHB3P54753 AC012615.4-201ENST00000586694 607 ntTSL 4 BASIC16.41■□□□□ 0.22
EPHB3P54753 SMCO4-206ENST00000596676 180 ntAPPRIS P1 BASIC16.41■□□□□ 0.22
EPHB3P54753 AC015819.2-201ENST00000618730 555 ntTSL 3 BASIC16.41■□□□□ 0.22
EPHB3P54753 WNT11-204ENST00000621122 789 ntTSL 5 BASIC16.41■□□□□ 0.22
EPHB3P54753 RAB34-222ENST00000625712 994 ntTSL 1 (best) BASIC16.41■□□□□ 0.22
EPHB3P54753 NSUN5-203ENST00000428206 2269 ntAPPRIS ALT2 TSL 2 BASIC16.41■□□□□ 0.22
EPHB3P54753 ABCG5-201ENST00000260645 2740 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
EPHB3P54753 AC069224.1-201ENST00000566372 1715 ntBASIC16.41■□□□□ 0.22
EPHB3P54753 RB1CC1-202ENST00000435644 6614 ntAPPRIS ALT1 TSL 1 (best) BASIC16.41■□□□□ 0.22
EPHB3P54753 HHATL-205ENST00000441594 1865 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
EPHB3P54753 MAN1C1-201ENST00000263979 2627 ntTSL 5 BASIC16.41■□□□□ 0.22
EPHB3P54753 FAM53A-207ENST00000489363 2776 ntTSL 2 BASIC16.41■□□□□ 0.22
EPHB3P54753 AC118344.1-201ENST00000378432 1462 ntTSL 2 BASIC16.41■□□□□ 0.22
EPHB3P54753 PPHLN1-204ENST00000358314 1643 ntTSL 2 BASIC16.41■□□□□ 0.22
EPHB3P54753 TP73-213ENST00000604479 1623 ntTSL 5 BASIC16.41■□□□□ 0.22
EPHB3P54753 USP42-201ENST00000306177 5155 ntAPPRIS P1 TSL 5 BASIC16.41■□□□□ 0.22
EPHB3P54753 SH2B3-202ENST00000538307 2062 ntTSL 2 BASIC16.41■□□□□ 0.22
EPHB3P54753 TOM1-204ENST00000411850 2390 ntAPPRIS ALT1 TSL 1 (best) BASIC16.41■□□□□ 0.22
EPHB3P54753 AC124067.4-201ENST00000519691 2379 ntBASIC16.41■□□□□ 0.22
EPHB3P54753 POU4F2-201ENST00000281321 3144 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
EPHB3P54753 RHOT1-201ENST00000333942 3133 ntAPPRIS ALT1 TSL 1 (best) BASIC16.41■□□□□ 0.22
EPHB3P54753 MUTYH-234ENST00000528013 1662 ntTSL 5 BASIC16.4■□□□□ 0.22
EPHB3P54753 DHPS-201ENST00000210060 1363 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
EPHB3P54753 FDFT1-202ENST00000443614 1393 ntTSL 2 BASIC16.4■□□□□ 0.22
EPHB3P54753 SH3BP4-203ENST00000409212 5231 ntAPPRIS P1 TSL 5 BASIC16.4■□□□□ 0.22
EPHB3P54753 KCNJ12-201ENST00000331718 2198 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
EPHB3P54753 UBE2R2-201ENST00000263228 4075 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
EPHB3P54753 ETV4-211ENST00000591713 1727 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
EPHB3P54753 ZNF805-201ENST00000354309 2396 ntTSL 5 BASIC16.4■□□□□ 0.22
EPHB3P54753 YTHDF3-215ENST00000621957 2387 ntAPPRIS ALT1 TSL 5 BASIC16.4■□□□□ 0.22
EPHB3P54753 CTDSP2-201ENST00000398073 4795 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
EPHB3P54753 GOLM1-203ENST00000388712 3046 ntAPPRIS P2 TSL 1 (best) BASIC16.4■□□□□ 0.22
EPHB3P54753 ACKR1-201ENST00000368121 1240 ntBASIC16.4■□□□□ 0.22
EPHB3P54753 AC243836.1-201ENST00000416696 438 ntTSL 3 BASIC16.4■□□□□ 0.22
EPHB3P54753 AL354761.2-202ENST00000430816 546 ntAPPRIS P1 TSL 5 BASIC16.4■□□□□ 0.22
EPHB3P54753 AC103563.7-201ENST00000448734 478 ntTSL 3 BASIC16.4■□□□□ 0.22
EPHB3P54753 LINC01887-202ENST00000584734 860 ntTSL 3 BASIC16.4■□□□□ 0.22
EPHB3P54753 AC107373.2-201ENST00000607735 490 ntBASIC16.4■□□□□ 0.22
EPHB3P54753 EBAG9-209ENST00000614147 1179 ntTSL 5 BASIC16.4■□□□□ 0.22
EPHB3P54753 C9orf50-202ENST00000619117 796 ntAPPRIS ALT2 TSL 1 (best) BASIC16.4■□□□□ 0.22
EPHB3P54753 RPH3AL-222ENST00000618002 2578 ntAPPRIS P2 TSL 5 BASIC16.4■□□□□ 0.22
EPHB3P54753 USE1-206ENST00000595101 1776 ntTSL 2 BASIC16.4■□□□□ 0.22
EPHB3P54753 PRKCZ-202ENST00000400921 2294 ntTSL 1 (best) BASIC16.4■□□□□ 0.22
EPHB3P54753 MYCL-203ENST00000397332 3256 ntAPPRIS ALT2 TSL 1 (best) BASIC16.4■□□□□ 0.22
EPHB3P54753 KLK6-203ENST00000391808 1478 ntTSL 1 (best) BASIC16.4■□□□□ 0.22
EPHB3P54753 BMP2K-201ENST00000335016 3804 ntAPPRIS ALT2 TSL 5 BASIC16.4■□□□□ 0.22
EPHB3P54753 LEF1-201ENST00000265165 3068 ntAPPRIS P3 TSL 1 (best) BASIC16.39■□□□□ 0.22
EPHB3P54753 PNMA3-202ENST00000593810 1432 ntAPPRIS P1 BASIC16.39■□□□□ 0.21
EPHB3P54753 CHTOP-203ENST00000368690 2165 ntAPPRIS ALT1 TSL 1 (best) BASIC16.39■□□□□ 0.21
EPHB3P54753 PRORSD1P-202ENST00000563365 2154 ntBASIC16.39■□□□□ 0.21
EPHB3P54753 RUNX1-203ENST00000358356 2720 ntTSL 1 (best) BASIC16.39■□□□□ 0.21
EPHB3P54753 SCGN-201ENST00000334979 704 ntTSL 1 (best) BASIC16.39■□□□□ 0.21
EPHB3P54753 TEX30-203ENST00000376022 828 ntTSL 2 BASIC16.39■□□□□ 0.21
EPHB3P54753 BRF1-202ENST00000379932 884 ntTSL 5 BASIC16.39■□□□□ 0.21
EPHB3P54753 MPV17-203ENST00000380044 1005 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
EPHB3P54753 TMEM239-202ENST00000380585 571 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
EPHB3P54753 AP000552.1-208ENST00000452952 576 ntTSL 4 BASIC16.39■□□□□ 0.21
EPHB3P54753 AC007551.1-201ENST00000457394 519 ntBASIC16.39■□□□□ 0.21
EPHB3P54753 ARL2-204ENST00000529384 830 ntAPPRIS P1 TSL 3 BASIC16.39■□□□□ 0.21
EPHB3P54753 SNAI3-AS1-206ENST00000569786 588 ntTSL 3 BASIC16.39■□□□□ 0.21
EPHB3P54753 IFT20-206ENST00000578122 834 ntTSL 2 BASIC16.39■□□□□ 0.21
EPHB3P54753 IFT20-208ENST00000578985 831 ntTSL 3 BASIC16.39■□□□□ 0.21
EPHB3P54753 ATF5-205ENST00000600336 682 ntTSL 2 BASIC16.39■□□□□ 0.21
EPHB3P54753 LINC01515-215ENST00000608678 854 ntTSL 5 BASIC16.39■□□□□ 0.21
EPHB3P54753 HADH-212ENST00000638621 741 ntTSL 5 BASIC16.39■□□□□ 0.21
EPHB3P54753 FAM120AOS-201ENST00000375412 2771 ntAPPRIS P3 TSL 1 (best) BASIC16.39■□□□□ 0.21
EPHB3P54753 FSCN1-201ENST00000382361 2777 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
EPHB3P54753 ZFP28-201ENST00000301318 4096 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
EPHB3P54753 SCP2-204ENST00000407246 2239 ntTSL 2 BASIC16.39■□□□□ 0.21
EPHB3P54753 GSK3B-201ENST00000264235 7711 ntAPPRIS ALT1 TSL 1 (best) BASIC16.39■□□□□ 0.21
EPHB3P54753 TRIM39-205ENST00000396551 3249 ntAPPRIS ALT2 TSL 5 BASIC16.39■□□□□ 0.21
EPHB3P54753 HACE1-201ENST00000262903 4576 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
EPHB3P54753 ZCCHC17-206ENST00000616393 1534 ntTSL 5 BASIC16.39■□□□□ 0.21
EPHB3P54753 MAP4K1-201ENST00000396857 2653 ntAPPRIS P1 TSL 5 BASIC16.39■□□□□ 0.21
EPHB3P54753 C2orf54-202ENST00000388934 1911 ntAPPRIS P4 TSL 2 BASIC16.39■□□□□ 0.21
EPHB3P54753 NOS3-210ENST00000484524 2537 ntTSL 1 (best) BASIC16.39■□□□□ 0.21
EPHB3P54753 ZNF133-204ENST00000396026 2717 ntAPPRIS P3 TSL 3 BASIC16.39■□□□□ 0.21
EPHB3P54753 TBCEL-205ENST00000529397 1375 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
EPHB3P54753 SIN3B-202ENST00000379803 5129 ntAPPRIS P3 TSL 1 (best) BASIC16.38■□□□□ 0.21
EPHB3P54753 SSPN-201ENST00000242729 2788 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
EPHB3P54753 CDC14A-202ENST00000361544 2417 ntAPPRIS P4 TSL 1 (best) BASIC16.38■□□□□ 0.21
EPHB3P54753 MIER1-209ENST00000401042 1648 ntTSL 1 (best) BASIC16.38■□□□□ 0.21
EPHB3P54753 AC068831.1-204ENST00000501381 1621 ntTSL 2 BASIC16.38■□□□□ 0.21
EPHB3P54753 PGPEP1-201ENST00000252813 1409 ntTSL 2 BASIC16.38■□□□□ 0.21
EPHB3P54753 ABCB10-201ENST00000344517 3857 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
EPHB3P54753 ARID5A-203ENST00000454558 3079 ntTSL 1 (best) BASIC16.38■□□□□ 0.21
EPHB3P54753 ANKRD35-202ENST00000544626 3093 ntTSL 5 BASIC16.38■□□□□ 0.21
EPHB3P54753 CHAT-201ENST00000337653 2458 ntAPPRIS P4 TSL 1 (best) BASIC16.38■□□□□ 0.21
Retrieved 100 of 98,524 protein–RNA pairs in 44.5 ms