Protein–RNA interactions for Protein: Q969F9

HPS3, Hermansky-Pudlak syndrome 3 protein, humanhuman

Predictions only

Length 1,004 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HPS3Q969F9 CMPK1-203ENST00000371873 2930 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
HPS3Q969F9 ETV5-206ENST00000434744 2213 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
HPS3Q969F9 RTN1-209ENST00000611068 2647 ntTSL 5 BASIC17.5■□□□□ 0.39
HPS3Q969F9 PAM16-201ENST00000318059 587 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
HPS3Q969F9 TNNC2-201ENST00000372555 710 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
HPS3Q969F9 RBM3-202ENST00000376755 1130 ntAPPRIS P1 TSL 2 BASIC17.5■□□□□ 0.39
HPS3Q969F9 C6orf52-202ENST00000379586 430 ntAPPRIS ALT2 TSL 2 BASIC17.5■□□□□ 0.39
HPS3Q969F9 BAD-202ENST00000394531 631 ntTSL 3 BASIC17.5■□□□□ 0.39
HPS3Q969F9 FO393414.2-201ENST00000405153 598 ntBASIC17.5■□□□□ 0.39
HPS3Q969F9 HLA-DRB6-201ENST00000411500 1235 ntBASIC17.5■□□□□ 0.39
HPS3Q969F9 AC107890.1-201ENST00000422478 521 ntBASIC17.5■□□□□ 0.39
HPS3Q969F9 BAD-207ENST00000544785 525 ntTSL 3 BASIC17.5■□□□□ 0.39
HPS3Q969F9 AL162231.3-201ENST00000556278 902 ntAPPRIS P1 TSL 5 BASIC17.5■□□□□ 0.39
HPS3Q969F9 AC018558.2-201ENST00000566562 480 ntTSL 3 BASIC17.5■□□□□ 0.39
HPS3Q969F9 AC016727.1-203ENST00000603199 540 ntTSL 4 BASIC17.5■□□□□ 0.39
HPS3Q969F9 CLN3-255ENST00000637100 1284 ntTSL 5 BASIC17.5■□□□□ 0.39
HPS3Q969F9 MTX3-201ENST00000509852 1655 ntTSL 1 (best) BASIC17.5■□□□□ 0.39
HPS3Q969F9 OGFOD2-202ENST00000397389 2308 ntTSL 2 BASIC17.5■□□□□ 0.39
HPS3Q969F9 PKD2L2-205ENST00000508638 2333 ntTSL 1 (best) BASIC17.5■□□□□ 0.39
HPS3Q969F9 CRH-201ENST00000276571 1543 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
HPS3Q969F9 WDR45-240ENST00000635003 1376 ntTSL 3 BASIC17.5■□□□□ 0.39
HPS3Q969F9 MAP4K4-205ENST00000350878 7640 ntTSL 1 (best) BASIC17.5■□□□□ 0.39
HPS3Q969F9 CES4A-207ENST00000540947 2284 ntAPPRIS P2 TSL 2 BASIC17.5■□□□□ 0.39
HPS3Q969F9 AAMP-201ENST00000248450 1886 ntAPPRIS P3 TSL 1 (best) BASIC17.5■□□□□ 0.39
HPS3Q969F9 RFX1-201ENST00000254325 4332 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
HPS3Q969F9 SCRIB-202ENST00000356994 5218 ntAPPRIS P4 TSL 2 BASIC17.5■□□□□ 0.39
HPS3Q969F9 TSG101-204ENST00000536719 2101 ntTSL 5 BASIC17.5■□□□□ 0.39
HPS3Q969F9 RAPSN-202ENST00000352508 1452 ntTSL 1 (best) BASIC17.5■□□□□ 0.39
HPS3Q969F9 MUTYH-209ENST00000448481 1706 ntTSL 1 (best) BASIC17.5■□□□□ 0.39
HPS3Q969F9 TMBIM7P-203ENST00000641617 1718 ntBASIC17.5■□□□□ 0.39
HPS3Q969F9 SEMA3B-212ENST00000616701 2958 ntAPPRIS P3 TSL 1 (best) BASIC17.49■□□□□ 0.39
HPS3Q969F9 CNN1-210ENST00000592923 1848 ntTSL 2 BASIC17.49■□□□□ 0.39
HPS3Q969F9 MBD1-222ENST00000590208 2913 ntAPPRIS ALT2 TSL 1 (best) BASIC17.49■□□□□ 0.39
HPS3Q969F9 MAP1LC3B-201ENST00000268607 2688 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
HPS3Q969F9 PCDHA1-203ENST00000504120 5263 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
HPS3Q969F9 MOSPD3-201ENST00000223054 1053 ntAPPRIS P1 TSL 2 BASIC17.49■□□□□ 0.39
HPS3Q969F9 DBNDD2-205ENST00000372717 1207 ntTSL 5 BASIC17.49■□□□□ 0.39
HPS3Q969F9 LY6G6C-201ENST00000375819 992 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
HPS3Q969F9 RETN-202ENST00000381324 249 ntTSL 1 (best) BASIC17.49■□□□□ 0.39
HPS3Q969F9 TNNT3-204ENST00000381558 1258 ntAPPRIS ALT2 TSL 5 BASIC17.49■□□□□ 0.39
HPS3Q969F9 HLA-V-204ENST00000476601 1289 ntBASIC17.49■□□□□ 0.39
HPS3Q969F9 APBB2-208ENST00000504305 1274 ntTSL 5 BASIC17.49■□□□□ 0.39
HPS3Q969F9 AC008406.2-201ENST00000507058 532 ntTSL 3 BASIC17.49■□□□□ 0.39
HPS3Q969F9 AC097493.3-201ENST00000509725 367 ntBASIC17.49■□□□□ 0.39
HPS3Q969F9 AC027369.6-201ENST00000525520 931 ntBASIC17.49■□□□□ 0.39
HPS3Q969F9 AL139349.1-201ENST00000530479 577 ntTSL 4 BASIC17.49■□□□□ 0.39
HPS3Q969F9 MAGEA8-204ENST00000535454 2112 ntAPPRIS P1 TSL 3 BASIC17.49■□□□□ 0.39
HPS3Q969F9 AC087741.1-202ENST00000573346 801 ntTSL 3 BASIC17.49■□□□□ 0.39
HPS3Q969F9 AC116003.1-201ENST00000578340 536 ntTSL 3 BASIC17.49■□□□□ 0.39
HPS3Q969F9 AL033527.5-202ENST00000641632 1098 ntBASIC17.49■□□□□ 0.39
HPS3Q969F9 SLC8A3-202ENST00000356921 5250 ntAPPRIS P3 TSL 1 (best) BASIC17.49■□□□□ 0.39
HPS3Q969F9 PARP16-201ENST00000261888 2731 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
HPS3Q969F9 SPIN3-224ENST00000639583 2245 ntTSL 5 BASIC17.49■□□□□ 0.39
HPS3Q969F9 POMT1-205ENST00000404875 2821 ntTSL 2 BASIC17.49■□□□□ 0.39
HPS3Q969F9 RASA1-201ENST00000274376 3752 ntAPPRIS P3 TSL 1 (best) BASIC17.49■□□□□ 0.39
HPS3Q969F9 CHTF18-205ENST00000455171 3172 ntAPPRIS ALT2 TSL 2 BASIC17.49■□□□□ 0.39
HPS3Q969F9 BCL2L2-PABPN1-203ENST00000557008 1366 ntAPPRIS P1 TSL 5 BASIC17.49■□□□□ 0.39
HPS3Q969F9 TOM1-209ENST00000447733 2317 ntTSL 2 BASIC17.49■□□□□ 0.39
HPS3Q969F9 ARMC5-203ENST00000457010 4844 ntAPPRIS P3 TSL 1 (best) BASIC17.49■□□□□ 0.39
HPS3Q969F9 TEN1-CDK3-202ENST00000569284 3287 ntAPPRIS P1 TSL 2 BASIC17.49■□□□□ 0.39
HPS3Q969F9 SEPT11-206ENST00000505788 2079 ntAPPRIS ALT1 TSL 5 BASIC17.49■□□□□ 0.39
HPS3Q969F9 SPAG6-201ENST00000313311 2421 ntTSL 1 (best) BASIC17.49■□□□□ 0.39
HPS3Q969F9 RUNDC3B-202ENST00000338056 4099 ntTSL 2 BASIC17.49■□□□□ 0.39
HPS3Q969F9 FDPS-201ENST00000356657 1478 ntAPPRIS P3 TSL 1 (best) BASIC17.49■□□□□ 0.39
HPS3Q969F9 HDHD3-202ENST00000374180 1497 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
HPS3Q969F9 FBXO22-202ENST00000453211 1486 ntTSL 2 BASIC17.49■□□□□ 0.39
HPS3Q969F9 RGL3-201ENST00000380456 2542 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
HPS3Q969F9 HEY1-201ENST00000337919 2296 ntAPPRIS ALT1 TSL 1 (best) BASIC17.49■□□□□ 0.39
HPS3Q969F9 TMEM53-204ENST00000372243 1579 ntTSL 2 BASIC17.49■□□□□ 0.39
HPS3Q969F9 NPHP3-AS1-201ENST00000489343 2957 ntTSL 1 (best) BASIC17.49■□□□□ 0.39
HPS3Q969F9 WDR6-222ENST00000615452 1949 ntTSL 5 BASIC17.49■□□□□ 0.39
HPS3Q969F9 RAD23B-201ENST00000358015 4119 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
HPS3Q969F9 ZNF208-205ENST00000601773 2027 ntTSL 2 BASIC17.48■□□□□ 0.39
HPS3Q969F9 AK4-207ENST00000545314 6887 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
HPS3Q969F9 COX6B2-201ENST00000326529 1663 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
HPS3Q969F9 SHANK2-204ENST00000409530 2123 ntTSL 5 BASIC17.48■□□□□ 0.39
HPS3Q969F9 C16orf54-201ENST00000329410 2585 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
HPS3Q969F9 ARHGAP23-221ENST00000620417 3663 ntAPPRIS ALT2 TSL 5 BASIC17.48■□□□□ 0.39
HPS3Q969F9 IDH3G-204ENST00000427365 1526 ntTSL 5 BASIC17.48■□□□□ 0.39
HPS3Q969F9 WRAP73-202ENST00000378322 1998 ntTSL 1 (best) BASIC17.48■□□□□ 0.39
HPS3Q969F9 GOLGA2P7-202ENST00000400817 2850 ntTSL 1 (best) BASIC17.48■□□□□ 0.39
HPS3Q969F9 C6orf106-203ENST00000374026 4232 ntAPPRIS ALT2 TSL 2 BASIC17.48■□□□□ 0.39
HPS3Q969F9 BEND4-202ENST00000504360 8692 ntTSL 1 (best) BASIC17.48■□□□□ 0.39
HPS3Q969F9 MTA2-201ENST00000278823 3058 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
HPS3Q969F9 SRP19-201ENST00000282999 937 ntTSL 1 (best) BASIC17.48■□□□□ 0.39
HPS3Q969F9 CCDC107-204ENST00000378409 1173 ntAPPRIS ALT2 TSL 1 (best) BASIC17.48■□□□□ 0.39
HPS3Q969F9 CENPM-205ENST00000404067 905 ntTSL 3 BASIC17.48■□□□□ 0.39
HPS3Q969F9 CENPM-206ENST00000407253 818 ntTSL 2 BASIC17.48■□□□□ 0.39
HPS3Q969F9 TMEM120A-203ENST00000439537 1161 ntTSL 1 (best) BASIC17.48■□□□□ 0.39
HPS3Q969F9 RPS27L-204ENST00000455271 923 ntTSL 1 (best) BASIC17.48■□□□□ 0.39
HPS3Q969F9 AC091133.3-201ENST00000504865 432 ntTSL 5 BASIC17.48■□□□□ 0.39
HPS3Q969F9 PDCD6-202ENST00000505221 672 ntTSL 3 BASIC17.48■□□□□ 0.39
HPS3Q969F9 AC122138.1-201ENST00000508799 646 ntTSL 2 BASIC17.48■□□□□ 0.39
HPS3Q969F9 RPL10P19-202ENST00000520582 722 ntTSL 3 BASIC17.48■□□□□ 0.39
HPS3Q969F9 AC069120.2-201ENST00000524091 540 ntBASIC17.48■□□□□ 0.39
HPS3Q969F9 AC010336.2-201ENST00000564226 506 ntBASIC17.48■□□□□ 0.39
HPS3Q969F9 AC140878.1-201ENST00000565277 250 ntBASIC17.48■□□□□ 0.39
HPS3Q969F9 AL031717.1-201ENST00000569670 565 ntTSL 4 BASIC17.48■□□□□ 0.39
HPS3Q969F9 AC015911.4-201ENST00000588022 1070 ntBASIC17.48■□□□□ 0.39
HPS3Q969F9 KLK15-203ENST00000596931 692 ntTSL 1 (best) BASIC17.48■□□□□ 0.39
Retrieved 100 of 98,524 protein–RNA pairs in 32.5 ms