Protein–RNA interactions for Protein: P19447

ERCC3, TFIIH basal transcription factor complex helicase XPB subunit, humanhuman

Predictions only

Length 782 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ERCC3P19447 PPM1D-201ENST00000305921 4778 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
ERCC3P19447 PCM1-206ENST00000518537 2171 ntTSL 1 (best) BASIC18.32■□□□□ 0.52
ERCC3P19447 DKC1-213ENST00000620277 3079 ntAPPRIS ALT2 TSL 1 (best) BASIC18.32■□□□□ 0.52
ERCC3P19447 ACIN1-205ENST00000457657 4815 ntAPPRIS ALT2 TSL 5 BASIC18.32■□□□□ 0.52
ERCC3P19447 TSC2-222ENST00000568454 5434 ntAPPRIS ALT2 TSL 2 BASIC18.32■□□□□ 0.52
ERCC3P19447 ERICH5-201ENST00000318528 1761 ntAPPRIS P3 TSL 1 (best) BASIC18.32■□□□□ 0.52
ERCC3P19447 KCNQ2-209ENST00000625514 2925 ntTSL 5 BASIC18.32■□□□□ 0.52
ERCC3P19447 AP000487.1-202ENST00000500185 2602 ntTSL 2 BASIC18.32■□□□□ 0.52
ERCC3P19447 DTX4-204ENST00000532982 1708 ntTSL 1 (best) BASIC18.32■□□□□ 0.52
ERCC3P19447 KRT8P37-201ENST00000451609 1420 ntBASIC18.32■□□□□ 0.52
ERCC3P19447 SLC39A13-201ENST00000354884 2289 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
ERCC3P19447 TBRG4-203ENST00000395655 2225 ntTSL 2 BASIC18.31■□□□□ 0.52
ERCC3P19447 SLC17A7-204ENST00000600601 2237 ntTSL 2 BASIC18.31■□□□□ 0.52
ERCC3P19447 EPHA8-201ENST00000166244 4943 ntAPPRIS P1 TSL 2 BASIC18.31■□□□□ 0.52
ERCC3P19447 FAM83G-202ENST00000388995 5266 ntAPPRIS P1 TSL 5 BASIC18.31■□□□□ 0.52
ERCC3P19447 CALHM2-202ENST00000369788 1843 ntAPPRIS P1 TSL 2 BASIC18.31■□□□□ 0.52
ERCC3P19447 TVP23B-201ENST00000307767 2064 ntAPPRIS P2 TSL 1 (best) BASIC18.31■□□□□ 0.52
ERCC3P19447 PRAG1-202ENST00000622241 4639 ntAPPRIS P1 TSL 2 BASIC18.31■□□□□ 0.52
ERCC3P19447 MIOS-202ENST00000405785 3095 ntAPPRIS P1 TSL 5 BASIC18.31■□□□□ 0.52
ERCC3P19447 CSF2-201ENST00000296871 787 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
ERCC3P19447 LDLRAD1-201ENST00000371360 785 ntAPPRIS P3 TSL 1 (best) BASIC18.31■□□□□ 0.52
ERCC3P19447 LINC01121-201ENST00000378479 1095 ntTSL 1 (best) BASIC18.31■□□□□ 0.52
ERCC3P19447 DGCR6-202ENST00000413981 1039 ntTSL 1 (best) BASIC18.31■□□□□ 0.52
ERCC3P19447 RPL28-204ENST00000431533 590 ntTSL 2 BASIC18.31■□□□□ 0.52
ERCC3P19447 KRT223P-202ENST00000449164 1292 ntBASIC18.31■□□□□ 0.52
ERCC3P19447 ROPN1-207ENST00000484329 566 ntTSL 3 BASIC18.31■□□□□ 0.52
ERCC3P19447 BRF2-202ENST00000520601 1192 ntTSL 3 BASIC18.31■□□□□ 0.52
ERCC3P19447 RPL28-206ENST00000558752 671 ntTSL 3 BASIC18.31■□□□□ 0.52
ERCC3P19447 AC243562.2-201ENST00000561247 970 ntBASIC18.31■□□□□ 0.52
ERCC3P19447 AP005482.1-201ENST00000563722 1273 ntBASIC18.31■□□□□ 0.52
ERCC3P19447 AC036164.1-201ENST00000570544 333 ntBASIC18.31■□□□□ 0.52
ERCC3P19447 AC079336.2-201ENST00000578408 927 ntTSL 3 BASIC18.31■□□□□ 0.52
ERCC3P19447 BTNL10-201ENST00000595971 695 ntBASIC18.31■□□□□ 0.52
ERCC3P19447 PCBP1-201ENST00000303577 1750 ntAPPRIS P1 BASIC18.31■□□□□ 0.52
ERCC3P19447 USP13-201ENST00000263966 8323 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
ERCC3P19447 PLPPR5-201ENST00000263177 3288 ntAPPRIS P4 TSL 1 (best) BASIC18.31■□□□□ 0.52
ERCC3P19447 AC096667.1-201ENST00000640078 3465 ntTSL 5 BASIC18.31■□□□□ 0.52
ERCC3P19447 TAP2-202ENST00000374899 2497 ntTSL 1 (best) BASIC18.31■□□□□ 0.52
ERCC3P19447 PPP1R3G-201ENST00000405617 4907 ntAPPRIS P1 BASIC18.31■□□□□ 0.52
ERCC3P19447 FOXO3-201ENST00000343882 7308 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
ERCC3P19447 ADAMTSL4-204ENST00000369041 2908 ntTSL 5 BASIC18.31■□□□□ 0.52
ERCC3P19447 SBSN-201ENST00000452271 1945 ntAPPRIS ALT2 TSL 1 (best) BASIC18.31■□□□□ 0.52
ERCC3P19447 RFC5-204ENST00000454402 1655 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
ERCC3P19447 FOXN1-203ENST00000579795 2145 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
ERCC3P19447 CNP-201ENST00000393888 2583 ntTSL 1 (best) BASIC18.31■□□□□ 0.52
ERCC3P19447 ARL8B-201ENST00000256496 3005 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
ERCC3P19447 ABHD2-207ENST00000565973 2347 ntAPPRIS P1 TSL 5 BASIC18.31■□□□□ 0.52
ERCC3P19447 VCAN-204ENST00000502527 2087 ntAPPRIS ALT1 TSL 1 (best) BASIC18.3■□□□□ 0.52
ERCC3P19447 NBL1-211ENST00000618761 2051 ntAPPRIS P3 TSL 1 (best) BASIC18.3■□□□□ 0.52
ERCC3P19447 WSB2-202ENST00000441406 1353 ntTSL 2 BASIC18.3■□□□□ 0.52
ERCC3P19447 PCDH1-203ENST00000394536 3827 ntAPPRIS ALT2 TSL 1 (best) BASIC18.3■□□□□ 0.52
ERCC3P19447 DIABLO-203ENST00000353548 1345 ntTSL 1 (best) BASIC18.3■□□□□ 0.52
ERCC3P19447 EIF3K-203ENST00000545173 1327 ntAPPRIS ALT1 TSL 2 BASIC18.3■□□□□ 0.52
ERCC3P19447 PPP4R3A-205ENST00000554684 4108 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
ERCC3P19447 RCAN3-210ENST00000618490 2386 ntTSL 1 (best) BASIC18.3■□□□□ 0.52
ERCC3P19447 PLK2-215ENST00000617412 2792 ntTSL 5 BASIC18.3■□□□□ 0.52
ERCC3P19447 FANK1-204ENST00000368695 1296 ntTSL 1 (best) BASIC18.3■□□□□ 0.52
ERCC3P19447 TAGLN-202ENST00000392951 928 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
ERCC3P19447 AKIP1-204ENST00000396648 1084 ntAPPRIS ALT2 TSL 2 BASIC18.3■□□□□ 0.52
ERCC3P19447 AC074338.1-201ENST00000416825 156 ntBASIC18.3■□□□□ 0.52
ERCC3P19447 KDM4A-AS1-204ENST00000439057 686 ntTSL 1 (best) BASIC18.3■□□□□ 0.52
ERCC3P19447 USP32P1-208ENST00000506594 1164 ntBASIC18.3■□□□□ 0.52
ERCC3P19447 AC008750.2-202ENST00000532688 729 ntTSL 3 BASIC18.3■□□□□ 0.52
ERCC3P19447 AC133552.6-201ENST00000613406 534 ntBASIC18.3■□□□□ 0.52
ERCC3P19447 LILRA2-208ENST00000629481 661 ntTSL 2 BASIC18.3■□□□□ 0.52
ERCC3P19447 AL033527.4-201ENST00000641026 673 ntBASIC18.3■□□□□ 0.52
ERCC3P19447 DNM2-203ENST00000389253 3581 ntTSL 5 BASIC18.3■□□□□ 0.52
ERCC3P19447 PIKFYVE-204ENST00000407449 1898 ntTSL 1 (best) BASIC18.3■□□□□ 0.52
ERCC3P19447 SLC2A4-202ENST00000424875 1852 ntTSL 2 BASIC18.3■□□□□ 0.52
ERCC3P19447 PMPCB-201ENST00000249269 2472 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
ERCC3P19447 MEX3A-202ENST00000532414 6124 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
ERCC3P19447 CCDC120-202ENST00000496529 2415 ntAPPRIS P3 TSL 2 BASIC18.3■□□□□ 0.52
ERCC3P19447 PABPC4-203ENST00000372858 2753 ntTSL 1 (best) BASIC18.3■□□□□ 0.52
ERCC3P19447 PLEKHB1-202ENST00000354190 2380 ntAPPRIS P4 TSL 1 (best) BASIC18.3■□□□□ 0.52
ERCC3P19447 RALYL-208ENST00000522455 2168 ntAPPRIS ALT2 TSL 2 BASIC18.3■□□□□ 0.52
ERCC3P19447 AC009292.1-201ENST00000502156 1986 ntTSL 1 (best) BASIC18.3■□□□□ 0.52
ERCC3P19447 TBP-207ENST00000616883 1750 ntAPPRIS ALT2 TSL 5 BASIC18.3■□□□□ 0.52
ERCC3P19447 AL031282.2-201ENST00000598846 5079 ntTSL 2 BASIC18.29■□□□□ 0.52
ERCC3P19447 NIM1K-201ENST00000326035 2313 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
ERCC3P19447 TMEM57-202ENST00000399766 3294 ntTSL 1 (best) BASIC18.29■□□□□ 0.52
ERCC3P19447 AP000787.1-201ENST00000501356 1926 ntTSL 2 BASIC18.29■□□□□ 0.52
ERCC3P19447 LCMT2-202ENST00000567039 1545 ntTSL 2 BASIC18.29■□□□□ 0.52
ERCC3P19447 EFEMP1-202ENST00000394555 3024 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
ERCC3P19447 ASTN2-202ENST00000313400 4747 ntAPPRIS ALT2 TSL 5 BASIC18.29■□□□□ 0.52
ERCC3P19447 G6PD-203ENST00000393564 1661 ntAPPRIS ALT2 TSL 5 BASIC18.29■□□□□ 0.52
ERCC3P19447 LETM2-205ENST00000519476 2240 ntTSL 1 (best) BASIC18.29■□□□□ 0.52
ERCC3P19447 NFATC4-208ENST00000553708 5367 ntAPPRIS ALT2 TSL 1 (best) BASIC18.29■□□□□ 0.52
ERCC3P19447 UVSSA-208ENST00000511563 1494 ntAPPRIS ALT2 TSL 2 BASIC18.29■□□□□ 0.52
ERCC3P19447 FGF6-201ENST00000228837 743 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
ERCC3P19447 MRPL55-201ENST00000295008 632 ntAPPRIS P1 TSL 2 BASIC18.29■□□□□ 0.52
ERCC3P19447 ANKRD19P-201ENST00000338192 862 ntBASIC18.29■□□□□ 0.52
ERCC3P19447 DSCR3-202ENST00000398998 988 ntTSL 5 BASIC18.29■□□□□ 0.52
ERCC3P19447 AC245100.5-201ENST00000452108 331 ntBASIC18.29■□□□□ 0.52
ERCC3P19447 PDCD6-202ENST00000505221 672 ntTSL 3 BASIC18.29■□□□□ 0.52
ERCC3P19447 HNRNPA1P13-201ENST00000510646 963 ntBASIC18.29■□□□□ 0.52
ERCC3P19447 GZMH-203ENST00000557220 520 ntTSL 1 (best) BASIC18.29■□□□□ 0.52
ERCC3P19447 CHRNA5-203ENST00000559554 1051 ntTSL 3 BASIC18.29■□□□□ 0.52
ERCC3P19447 OIP5-AS1-209ENST00000561226 775 ntTSL 3 BASIC18.29■□□□□ 0.52
ERCC3P19447 PIGL-212ENST00000581006 554 ntTSL 4 BASIC18.29■□□□□ 0.52
ERCC3P19447 CCT2-202ENST00000543146 2189 ntTSL 2 BASIC18.29■□□□□ 0.52
Retrieved 100 of 98,524 protein–RNA pairs in 65.8 ms