Protein–RNA interactions for Protein: Q5VIR6

VPS53, Vacuolar protein sorting-associated protein 53 homolog, humanhuman

Predictions only

Length 699 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53Q5VIR6 LINC01160-201ENST00000441004 768 ntTSL 3 BASIC19.11■□□□□ 0.65
VPS53Q5VIR6 AC093214.1-201ENST00000511688 1107 ntBASIC19.11■□□□□ 0.65
VPS53Q5VIR6 GABARAP-205ENST00000573928 476 ntTSL 1 (best) BASIC19.11■□□□□ 0.65
VPS53Q5VIR6 LINC00237-203ENST00000593272 630 ntTSL 4 BASIC19.11■□□□□ 0.65
VPS53Q5VIR6 PRKD2-214ENST00000600194 2923 ntAPPRIS ALT2 TSL 2 BASIC19.11■□□□□ 0.65
VPS53Q5VIR6 TAF15-205ENST00000603777 2011 ntAPPRIS ALT2 TSL 5 BASIC19.11■□□□□ 0.65
VPS53Q5VIR6 MAD1L1-202ENST00000399654 2762 ntAPPRIS P1 TSL 5 BASIC19.11■□□□□ 0.65
VPS53Q5VIR6 TSPAN5-201ENST00000305798 3365 ntAPPRIS P1 TSL 1 (best) BASIC19.11■□□□□ 0.65
VPS53Q5VIR6 SNRPD3-201ENST00000215829 1763 ntAPPRIS P1 TSL 1 (best) BASIC19.11■□□□□ 0.65
VPS53Q5VIR6 NT5C3A-204ENST00000405342 1759 ntAPPRIS P3 TSL 1 (best) BASIC19.11■□□□□ 0.65
VPS53Q5VIR6 GNB4-201ENST00000232564 6434 ntAPPRIS P1 TSL 1 (best) BASIC19.11■□□□□ 0.65
VPS53Q5VIR6 AMT-233ENST00000636522 1620 ntTSL 2 BASIC19.11■□□□□ 0.65
VPS53Q5VIR6 SAP130-203ENST00000357702 4173 ntTSL 1 (best) BASIC19.11■□□□□ 0.65
VPS53Q5VIR6 APP-204ENST00000357903 3543 ntAPPRIS ALT2 TSL 1 (best) BASIC19.11■□□□□ 0.65
VPS53Q5VIR6 DCAF5-201ENST00000341516 5953 ntAPPRIS P3 TSL 1 (best) BASIC19.1■□□□□ 0.65
VPS53Q5VIR6 FAM215B-201ENST00000458392 2183 ntTSL 1 (best) BASIC19.1■□□□□ 0.65
VPS53Q5VIR6 UNC13A-204ENST00000550896 5200 ntAPPRIS ALT2 TSL 5 BASIC19.1■□□□□ 0.65
VPS53Q5VIR6 RBFOX3-212ENST00000584778 1547 ntAPPRIS ALT2 TSL 5 BASIC19.1■□□□□ 0.65
VPS53Q5VIR6 MSI2-201ENST00000284073 6364 ntAPPRIS P4 TSL 1 (best) BASIC19.1■□□□□ 0.65
VPS53Q5VIR6 TMEM57-202ENST00000399766 3294 ntTSL 1 (best) BASIC19.1■□□□□ 0.65
VPS53Q5VIR6 LSMEM2-201ENST00000316436 1494 ntAPPRIS P1 TSL 1 (best) BASIC19.1■□□□□ 0.65
VPS53Q5VIR6 C7orf43-207ENST00000457641 2005 ntTSL 5 BASIC19.1■□□□□ 0.65
VPS53Q5VIR6 PCDHGB2-202ENST00000622527 2588 ntAPPRIS P1 BASIC19.1■□□□□ 0.65
VPS53Q5VIR6 PTPN5-201ENST00000358540 3135 ntTSL 1 (best) BASIC19.1■□□□□ 0.65
VPS53Q5VIR6 AC068587.6-202ENST00000641839 5619 ntBASIC19.1■□□□□ 0.65
VPS53Q5VIR6 AC096667.1-201ENST00000640078 3465 ntTSL 5 BASIC19.1■□□□□ 0.65
VPS53Q5VIR6 FES-204ENST00000414248 2327 ntTSL 2 BASIC19.1■□□□□ 0.65
VPS53Q5VIR6 SLC9A7-205ENST00000616978 10024 ntAPPRIS ALT2 TSL 1 (best) BASIC19.1■□□□□ 0.65
VPS53Q5VIR6 DYNLL1-201ENST00000242577 720 ntAPPRIS P1 TSL 1 (best) BASIC19.1■□□□□ 0.65
VPS53Q5VIR6 MRPL13-201ENST00000306185 1086 ntAPPRIS P1 TSL 1 (best) BASIC19.1■□□□□ 0.65
VPS53Q5VIR6 SIVA1-202ENST00000347067 550 ntTSL 1 (best) BASIC19.1■□□□□ 0.65
VPS53Q5VIR6 ASB12-201ENST00000362002 1289 ntAPPRIS P1 TSL 2 BASIC19.1■□□□□ 0.65
VPS53Q5VIR6 WFDC3-204ENST00000372632 704 ntTSL 3 BASIC19.1■□□□□ 0.65
VPS53Q5VIR6 MIR770-201ENST00000390219 98 ntBASIC19.1■□□□□ 0.65
VPS53Q5VIR6 GUK1-210ENST00000391865 990 ntAPPRIS ALT1 TSL 1 (best) BASIC19.1■□□□□ 0.65
VPS53Q5VIR6 HNRNPA3P1-201ENST00000401429 1139 ntBASIC19.1■□□□□ 0.65
VPS53Q5VIR6 NME4-207ENST00000450036 985 ntTSL 3 BASIC19.1■□□□□ 0.65
VPS53Q5VIR6 UGT1A2P-201ENST00000454886 866 ntBASIC19.1■□□□□ 0.65
VPS53Q5VIR6 HNRNPA3P5-201ENST00000455201 833 ntBASIC19.1■□□□□ 0.65
VPS53Q5VIR6 MDH2-205ENST00000461263 648 ntTSL 2 BASIC19.1■□□□□ 0.65
VPS53Q5VIR6 PTK7-212ENST00000476760 902 ntTSL 2 BASIC19.1■□□□□ 0.65
VPS53Q5VIR6 AC004890.2-204ENST00000481968 304 ntBASIC19.1■□□□□ 0.65
VPS53Q5VIR6 AC009407.1-201ENST00000568958 598 ntBASIC19.1■□□□□ 0.65
VPS53Q5VIR6 SPIB-207ENST00000597855 564 ntTSL 4 BASIC19.1■□□□□ 0.65
VPS53Q5VIR6 AL033527.5-202ENST00000641632 1098 ntBASIC19.1■□□□□ 0.65
VPS53Q5VIR6 BUD13-202ENST00000375445 1793 ntAPPRIS ALT2 TSL 1 (best) BASIC19.1■□□□□ 0.65
VPS53Q5VIR6 TCF25-201ENST00000263346 2233 ntAPPRIS P1 TSL 1 (best) BASIC19.1■□□□□ 0.65
VPS53Q5VIR6 ACSS1-201ENST00000323482 3680 ntAPPRIS P1 TSL 1 (best) BASIC19.1■□□□□ 0.65
VPS53Q5VIR6 GHDC-201ENST00000301671 2650 ntAPPRIS P1 TSL 2 BASIC19.1■□□□□ 0.65
VPS53Q5VIR6 SATB2-206ENST00000457245 2656 ntAPPRIS P1 TSL 2 BASIC19.1■□□□□ 0.65
VPS53Q5VIR6 DIP2A-201ENST00000400274 7023 ntAPPRIS ALT2 TSL 5 BASIC19.1■□□□□ 0.65
VPS53Q5VIR6 HYAL1-201ENST00000266031 2517 ntAPPRIS P1 TSL 1 (best) BASIC19.1■□□□□ 0.65
VPS53Q5VIR6 SLC22A6-203ENST00000421062 1560 ntTSL 1 (best) BASIC19.1■□□□□ 0.65
VPS53Q5VIR6 SLC22A23-210ENST00000490273 2043 ntTSL 1 (best) BASIC19.1■□□□□ 0.65
VPS53Q5VIR6 ARHGAP11B-210ENST00000622744 2042 ntAPPRIS P1 TSL 1 (best) BASIC19.1■□□□□ 0.65
VPS53Q5VIR6 PDE1C-202ENST00000396182 2420 ntTSL 1 (best) BASIC19.1■□□□□ 0.65
VPS53Q5VIR6 CERNA1-202ENST00000560518 1972 ntTSL 2 BASIC19.1■□□□□ 0.65
VPS53Q5VIR6 C2orf54-202ENST00000388934 1911 ntAPPRIS P4 TSL 2 BASIC19.1■□□□□ 0.65
VPS53Q5VIR6 ULK4-203ENST00000420927 1904 ntTSL 1 (best) BASIC19.1■□□□□ 0.65
VPS53Q5VIR6 CACFD1-207ENST00000542192 2754 ntTSL 2 BASIC19.1■□□□□ 0.65
VPS53Q5VIR6 CCNA2-202ENST00000618014 2797 ntAPPRIS P1 TSL 1 (best) BASIC19.1■□□□□ 0.65
VPS53Q5VIR6 PIGT-201ENST00000279035 1880 ntTSL 2 BASIC19.09■□□□□ 0.65
VPS53Q5VIR6 ATP6AP2-226ENST00000637526 1862 ntAPPRIS ALT2 TSL 5 BASIC19.09■□□□□ 0.65
VPS53Q5VIR6 DHX40-202ENST00000425628 2255 ntTSL 2 BASIC19.09■□□□□ 0.65
VPS53Q5VIR6 NBPF9-207ENST00000615421 5835 ntAPPRIS P2 TSL 5 BASIC19.09■□□□□ 0.65
VPS53Q5VIR6 NDRG1-202ENST00000414097 3755 ntAPPRIS P1 TSL 2 BASIC19.09■□□□□ 0.65
VPS53Q5VIR6 DNAJC2-203ENST00000379263 2167 ntAPPRIS P1 TSL 1 (best) BASIC19.09■□□□□ 0.65
VPS53Q5VIR6 POLI-208ENST00000579534 6133 ntAPPRIS P1 TSL 1 (best) BASIC19.09■□□□□ 0.65
VPS53Q5VIR6 HMBOX1-212ENST00000558662 1765 ntTSL 5 BASIC19.09■□□□□ 0.65
VPS53Q5VIR6 AKAP9-205ENST00000394564 1356 ntTSL 1 (best) BASIC19.09■□□□□ 0.65
VPS53Q5VIR6 RASAL1-207ENST00000548055 2502 ntAPPRIS ALT2 TSL 1 (best) BASIC19.09■□□□□ 0.65
VPS53Q5VIR6 IL11RA-202ENST00000441545 1700 ntAPPRIS P1 TSL 5 BASIC19.09■□□□□ 0.65
VPS53Q5VIR6 C16orf58-211ENST00000570164 2783 ntAPPRIS ALT1 TSL 5 BASIC19.09■□□□□ 0.65
VPS53Q5VIR6 MRPL2-201ENST00000230413 899 ntTSL 2 BASIC19.09■□□□□ 0.65
VPS53Q5VIR6 SPCS1-201ENST00000233025 1082 ntTSL 1 (best) BASIC19.09■□□□□ 0.65
VPS53Q5VIR6 MRPL43-201ENST00000299179 747 ntTSL 1 (best) BASIC19.09■□□□□ 0.65
VPS53Q5VIR6 LCE5A-201ENST00000334269 819 ntAPPRIS P1 TSL 3 BASIC19.09■□□□□ 0.65
VPS53Q5VIR6 FCRLB-204ENST00000367946 1152 ntTSL 1 (best) BASIC19.09■□□□□ 0.65
VPS53Q5VIR6 CIB3-202ENST00000379859 467 ntTSL 1 (best) BASIC19.09■□□□□ 0.65
VPS53Q5VIR6 MRPS18AP1-201ENST00000414458 589 ntBASIC19.09■□□□□ 0.65
VPS53Q5VIR6 RAD18-204ENST00000418463 563 ntTSL 4 BASIC19.09■□□□□ 0.65
VPS53Q5VIR6 RAD18-205ENST00000421052 582 ntTSL 3 BASIC19.09■□□□□ 0.65
VPS53Q5VIR6 AC241585.1-201ENST00000433527 519 ntBASIC19.09■□□□□ 0.65
VPS53Q5VIR6 FXR1-221ENST00000491674 365 ntTSL 2 BASIC19.09■□□□□ 0.65
VPS53Q5VIR6 LY6E-204ENST00000519546 971 ntTSL 2 BASIC19.09■□□□□ 0.65
VPS53Q5VIR6 ESR2-209ENST00000555278 1883 ntTSL 1 (best) BASIC19.09■□□□□ 0.65
VPS53Q5VIR6 EGFR-203ENST00000344576 2864 ntTSL 1 (best) BASIC19.09■□□□□ 0.65
VPS53Q5VIR6 RAP1GAP2-209ENST00000637138 3175 ntTSL 5 BASIC19.09■□□□□ 0.65
VPS53Q5VIR6 ZNF114-204ENST00000595607 2478 ntAPPRIS P1 TSL 1 (best) BASIC19.09■□□□□ 0.65
VPS53Q5VIR6 HDHD3-202ENST00000374180 1497 ntAPPRIS P1 TSL 1 (best) BASIC19.09■□□□□ 0.65
VPS53Q5VIR6 SERTAD1-201ENST00000357949 2114 ntAPPRIS P1 TSL 1 (best) BASIC19.09■□□□□ 0.65
VPS53Q5VIR6 ARHGEF1-204ENST00000378152 2986 ntTSL 1 (best) BASIC19.08■□□□□ 0.65
VPS53Q5VIR6 TFR2-202ENST00000431692 2631 ntTSL 5 BASIC19.08■□□□□ 0.65
VPS53Q5VIR6 FRMPD4-201ENST00000380682 8465 ntAPPRIS P2 TSL 1 (best) BASIC19.08■□□□□ 0.65
VPS53Q5VIR6 ARHGAP45-212ENST00000590577 3218 ntTSL 2 BASIC19.08■□□□□ 0.65
VPS53Q5VIR6 IDH3G-203ENST00000370093 1662 ntTSL 2 BASIC19.08■□□□□ 0.65
VPS53Q5VIR6 ZNF197-203ENST00000383744 1989 ntTSL 1 (best) BASIC19.08■□□□□ 0.65
VPS53Q5VIR6 TUBGCP2-204ENST00000417178 4029 ntTSL 2 BASIC19.08■□□□□ 0.65
VPS53Q5VIR6 MMP2-201ENST00000219070 3741 ntAPPRIS P1 TSL 1 (best) BASIC19.08■□□□□ 0.65
VPS53Q5VIR6 TRPV4-204ENST00000536838 2514 ntTSL 1 (best) BASIC19.08■□□□□ 0.65
Retrieved 100 of 98,524 protein–RNA pairs in 39.9 ms