Protein–RNA interactions for Protein: P29074

PTPN4, Tyrosine-protein phosphatase non-receptor type 4, humanhuman

Predictions only

Length 926 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN4P29074 ADCY1-202ENST00000432715 1693 ntTSL 2 BASIC15.98■□□□□ 0.15
PTPN4P29074 SBF1-201ENST00000348911 6045 ntAPPRIS ALT2 TSL 5 BASIC15.98■□□□□ 0.15
PTPN4P29074 SLC26A11-203ENST00000546047 2807 ntAPPRIS P1 TSL 1 (best) BASIC15.98■□□□□ 0.15
PTPN4P29074 ETV5-206ENST00000434744 2213 ntAPPRIS P1 TSL 1 (best) BASIC15.98■□□□□ 0.15
PTPN4P29074 EP400-203ENST00000333577 3092 ntTSL 1 (best) BASIC15.98■□□□□ 0.15
PTPN4P29074 STIP1-207ENST00000538945 1900 ntTSL 2 BASIC15.98■□□□□ 0.15
PTPN4P29074 GPAA1P2-202ENST00000606848 1787 ntBASIC15.98■□□□□ 0.15
PTPN4P29074 EPHX1-206ENST00000614058 1789 ntAPPRIS P1 TSL 1 (best) BASIC15.98■□□□□ 0.15
PTPN4P29074 NDUFB2-AS1-201ENST00000465466 1648 ntTSL 2 BASIC15.97■□□□□ 0.15
PTPN4P29074 DHRS1-201ENST00000288111 1480 ntAPPRIS P1 TSL 1 (best) BASIC15.97■□□□□ 0.15
PTPN4P29074 GCFC2-201ENST00000321027 4440 ntAPPRIS P1 TSL 1 (best) BASIC15.97■□□□□ 0.15
PTPN4P29074 FBP1-201ENST00000375326 1462 ntAPPRIS P1 TSL 1 (best) BASIC15.97■□□□□ 0.15
PTPN4P29074 CCT2-202ENST00000543146 2189 ntTSL 2 BASIC15.97■□□□□ 0.15
PTPN4P29074 TCP10-210ENST00000617120 2182 ntAPPRIS ALT2 TSL 5 BASIC15.97■□□□□ 0.15
PTPN4P29074 CECR7-202ENST00000441006 2726 ntTSL 1 (best) BASIC15.97■□□□□ 0.15
PTPN4P29074 ATP6AP2-201ENST00000378438 2022 ntAPPRIS ALT2 TSL 5 BASIC15.97■□□□□ 0.15
PTPN4P29074 MLPH-203ENST00000409373 2031 ntTSL 1 (best) BASIC15.97■□□□□ 0.15
PTPN4P29074 LINC00996-201ENST00000477392 2043 ntTSL 1 (best) BASIC15.97■□□□□ 0.15
PTPN4P29074 AC138517.2-201ENST00000637503 2594 ntAPPRIS P1 TSL 5 BASIC15.97■□□□□ 0.15
PTPN4P29074 RUNDC1-201ENST00000361677 3828 ntAPPRIS P1 TSL 1 (best) BASIC15.97■□□□□ 0.15
PTPN4P29074 GPSM1-202ENST00000354753 3533 ntAPPRIS ALT2 TSL 5 BASIC15.97■□□□□ 0.15
PTPN4P29074 SLC5A7-201ENST00000264047 5152 ntAPPRIS P1 TSL 1 (best) BASIC15.97■□□□□ 0.15
PTPN4P29074 RPH3AL-201ENST00000323434 2809 ntTSL 1 (best) BASIC15.97■□□□□ 0.15
PTPN4P29074 HARS2-206ENST00000508522 1562 ntTSL 2 BASIC15.97■□□□□ 0.15
PTPN4P29074 ATP2A3-204ENST00000397035 4182 ntTSL 5 BASIC15.97■□□□□ 0.15
PTPN4P29074 DUSP22-202ENST00000419235 3098 ntAPPRIS P1 TSL 2 BASIC15.97■□□□□ 0.15
PTPN4P29074 RAF1-205ENST00000442415 3085 ntTSL 5 BASIC15.97■□□□□ 0.15
PTPN4P29074 PKP4-AS1-203ENST00000629904 1951 ntTSL 5 BASIC15.97■□□□□ 0.15
PTPN4P29074 NRP2-203ENST00000357785 2926 ntAPPRIS P4 TSL 1 (best) BASIC15.97■□□□□ 0.15
PTPN4P29074 TSPAN4-205ENST00000397406 1426 ntAPPRIS P1 TSL 1 (best) BASIC15.97■□□□□ 0.15
PTPN4P29074 BSCL2-210ENST00000421906 1440 ntAPPRIS P3 TSL 5 BASIC15.97■□□□□ 0.15
PTPN4P29074 PITPNM2-208ENST00000542749 6660 ntAPPRIS P3 TSL 1 (best) BASIC15.97■□□□□ 0.15
PTPN4P29074 PERM1-201ENST00000341290 3035 ntAPPRIS ALT2 TSL 2 BASIC15.97■□□□□ 0.15
PTPN4P29074 RRP1-207ENST00000497547 3022 ntAPPRIS P1 TSL 1 (best) BASIC15.97■□□□□ 0.15
PTPN4P29074 ITLN1-201ENST00000326245 1183 ntAPPRIS P1 TSL 1 (best) BASIC15.97■□□□□ 0.15
PTPN4P29074 HIST1H3D-201ENST00000356476 411 ntAPPRIS P1 BASIC15.97■□□□□ 0.15
PTPN4P29074 UBE2F-202ENST00000409332 1138 ntTSL 5 BASIC15.97■□□□□ 0.15
PTPN4P29074 SYS1-203ENST00000414310 795 ntTSL 3 BASIC15.97■□□□□ 0.15
PTPN4P29074 RNF212-203ENST00000433731 1074 ntAPPRIS ALT2 TSL 1 (best) BASIC15.97■□□□□ 0.15
PTPN4P29074 AC023141.5-201ENST00000458585 616 ntBASIC15.97■□□□□ 0.15
PTPN4P29074 HLA-J-203ENST00000494367 1087 ntBASIC15.97■□□□□ 0.15
PTPN4P29074 SNCA-209ENST00000506244 570 ntAPPRIS P1 TSL 2 BASIC15.97■□□□□ 0.15
PTPN4P29074 AC020659.2-201ENST00000510176 585 ntTSL 4 BASIC15.97■□□□□ 0.15
PTPN4P29074 CTBP1-AS2-204ENST00000514984 533 ntTSL 4 BASIC15.97■□□□□ 0.15
PTPN4P29074 IL32-212ENST00000526464 1198 ntAPPRIS P4 TSL 2 BASIC15.97■□□□□ 0.15
PTPN4P29074 IL32-217ENST00000530538 674 ntAPPRIS P4 TSL 3 BASIC15.97■□□□□ 0.15
PTPN4P29074 OR10S1-201ENST00000531945 1121 ntAPPRIS P2 BASIC15.97■□□□□ 0.15
PTPN4P29074 DAD1-205ENST00000543337 501 ntTSL 3 BASIC15.97■□□□□ 0.15
PTPN4P29074 DUSP6-204ENST00000547291 1074 ntTSL 2 BASIC15.97■□□□□ 0.15
PTPN4P29074 AC108449.3-201ENST00000560714 585 ntTSL 3 BASIC15.97■□□□□ 0.15
PTPN4P29074 AC025678.2-201ENST00000562061 970 ntBASIC15.97■□□□□ 0.15
PTPN4P29074 LSM12-202ENST00000585388 942 ntTSL 3 BASIC15.97■□□□□ 0.15
PTPN4P29074 GPR42-202ENST00000597214 1182 ntAPPRIS P1 BASIC15.97■□□□□ 0.15
PTPN4P29074 GAK-222ENST00000618573 1248 ntTSL 1 (best) BASIC15.97■□□□□ 0.15
PTPN4P29074 RAB9A-203ENST00000618931 737 ntAPPRIS P1 TSL 2 BASIC15.97■□□□□ 0.15
PTPN4P29074 AC244517.11-201ENST00000624192 573 ntTSL 5 BASIC15.97■□□□□ 0.15
PTPN4P29074 HNRNPH1-250ENST00000630639 123 ntTSL 5 BASIC15.97■□□□□ 0.15
PTPN4P29074 OR10S1-202ENST00000641123 1121 ntAPPRIS ALT2 BASIC15.97■□□□□ 0.15
PTPN4P29074 KLK3-202ENST00000360617 1664 ntTSL 1 (best) BASIC15.97■□□□□ 0.15
PTPN4P29074 GNE-202ENST00000396594 5298 ntTSL 1 (best) BASIC15.97■□□□□ 0.15
PTPN4P29074 SIRT6-203ENST00000594279 1507 ntTSL 3 BASIC15.97■□□□□ 0.15
PTPN4P29074 XPO6-201ENST00000304658 4422 ntAPPRIS P1 TSL 1 (best) BASIC15.97■□□□□ 0.15
PTPN4P29074 HNRNPF-201ENST00000337970 2186 ntAPPRIS P1 TSL 1 (best) BASIC15.97■□□□□ 0.15
PTPN4P29074 B3GALNT1-203ENST00000392781 3606 ntAPPRIS P1 TSL 1 (best) BASIC15.97■□□□□ 0.15
PTPN4P29074 PRKRIP1-201ENST00000397912 2159 ntAPPRIS P1 TSL 1 (best) BASIC15.97■□□□□ 0.15
PTPN4P29074 FAM214B-202ENST00000378557 3070 ntAPPRIS P1 TSL 1 (best) BASIC15.97■□□□□ 0.15
PTPN4P29074 SESN1-202ENST00000356644 2676 ntTSL 1 (best) BASIC15.97■□□□□ 0.15
PTPN4P29074 MAGEF1-201ENST00000317897 1636 ntAPPRIS P1 BASIC15.97■□□□□ 0.15
PTPN4P29074 RGN-203ENST00000397180 2257 ntAPPRIS P1 TSL 5 BASIC15.97■□□□□ 0.15
PTPN4P29074 MIRLET7BHG-203ENST00000435439 2264 ntTSL 2 BASIC15.97■□□□□ 0.15
PTPN4P29074 STAT5B-201ENST00000293328 5103 ntAPPRIS P1 TSL 1 (best) BASIC15.97■□□□□ 0.15
PTPN4P29074 CNOT8-202ENST00000403027 2604 ntAPPRIS P1 TSL 1 (best) BASIC15.97■□□□□ 0.15
PTPN4P29074 STRA6-207ENST00000535552 2631 ntTSL 2 BASIC15.97■□□□□ 0.15
PTPN4P29074 RNF32-204ENST00000392743 1746 ntAPPRIS P1 TSL 1 (best) BASIC15.97■□□□□ 0.15
PTPN4P29074 ZNF786-202ENST00000491431 2874 ntAPPRIS P1 TSL 1 (best) BASIC15.97■□□□□ 0.15
PTPN4P29074 TRAF3-202ENST00000351691 2239 ntTSL 1 (best) BASIC15.96■□□□□ 0.15
PTPN4P29074 NR1H3-204ENST00000407404 1330 ntTSL 5 BASIC15.96■□□□□ 0.15
PTPN4P29074 NFKBIA-201ENST00000216797 1558 ntAPPRIS P1 TSL 1 (best) BASIC15.96■□□□□ 0.15
PTPN4P29074 TC2N-201ENST00000340892 4708 ntAPPRIS P1 TSL 1 (best) BASIC15.96■□□□□ 0.15
PTPN4P29074 LINC01118-203ENST00000479311 1588 ntTSL 1 (best) BASIC15.96■□□□□ 0.15
PTPN4P29074 NDRG2-206ENST00000397844 2096 ntTSL 1 (best) BASIC15.96■□□□□ 0.15
PTPN4P29074 PCDHGB1-202ENST00000611598 2592 ntAPPRIS ALT2 BASIC15.96■□□□□ 0.15
PTPN4P29074 ZBED1-201ENST00000381218 2832 ntAPPRIS P1 TSL 1 (best) BASIC15.96■□□□□ 0.15
PTPN4P29074 CDH24-202ENST00000397359 3552 ntTSL 5 BASIC15.96■□□□□ 0.15
PTPN4P29074 TSNARE1-201ENST00000307180 1907 ntAPPRIS ALT2 TSL 5 BASIC15.96■□□□□ 0.15
PTPN4P29074 LEMD3-201ENST00000308330 4764 ntAPPRIS P1 TSL 1 (best) BASIC15.96■□□□□ 0.15
PTPN4P29074 AP001189.5-201ENST00000637683 1413 ntTSL 5 BASIC15.96■□□□□ 0.15
PTPN4P29074 XPO5-201ENST00000265351 5364 ntAPPRIS P1 TSL 1 (best) BASIC15.96■□□□□ 0.15
PTPN4P29074 RER1-203ENST00000378513 3000 ntTSL 3 BASIC15.96■□□□□ 0.15
PTPN4P29074 MMRN2-201ENST00000372027 4375 ntAPPRIS P1 TSL 1 (best) BASIC15.96■□□□□ 0.15
PTPN4P29074 EIPR1-202ENST00000398659 1795 ntTSL 5 BASIC15.96■□□□□ 0.15
PTPN4P29074 UNC5C-202ENST00000504962 1789 ntTSL 2 BASIC15.96■□□□□ 0.15
PTPN4P29074 MFSD13A-201ENST00000238936 2852 ntAPPRIS P1 TSL 5 BASIC15.96■□□□□ 0.15
PTPN4P29074 CYP4X1-201ENST00000371901 2357 ntAPPRIS P1 TSL 1 (best) BASIC15.96■□□□□ 0.15
PTPN4P29074 PACSIN2-201ENST00000263246 3249 ntAPPRIS P1 TSL 1 (best) BASIC15.96■□□□□ 0.15
PTPN4P29074 H3F3C-201ENST00000340398 1057 ntAPPRIS P1 BASIC15.96■□□□□ 0.15
PTPN4P29074 MIR770-201ENST00000390219 98 ntBASIC15.96■□□□□ 0.15
PTPN4P29074 AL671277.1-201ENST00000429656 993 ntBASIC15.96■□□□□ 0.15
PTPN4P29074 XXYLT1-204ENST00000429994 865 ntTSL 3 BASIC15.96■□□□□ 0.15
PTPN4P29074 ADH5P3-201ENST00000433842 1137 ntBASIC15.96■□□□□ 0.15
Retrieved 100 of 98,524 protein–RNA pairs in 33.6 ms