Protein–RNA interactions for Protein: P22223

CDH3, Cadherin-3, humanhuman

Predictions only

Length 829 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CDH3P22223 C1orf43-203ENST00000368516 872 ntTSL 2 BASIC15.61■□□□□ 0.09
CDH3P22223 CSHL1-204ENST00000392824 823 ntAPPRIS ALT1 TSL 1 (best) BASIC15.61■□□□□ 0.09
CDH3P22223 TMEM176B-205ENST00000450753 1006 ntTSL 2 BASIC15.61■□□□□ 0.09
CDH3P22223 DRAM1-202ENST00000544152 1048 ntTSL 2 BASIC15.61■□□□□ 0.09
CDH3P22223 FAM92A-219ENST00000620645 1014 ntAPPRIS ALT2 TSL 5 BASIC15.61■□□□□ 0.09
CDH3P22223 ASCL1-201ENST00000266744 2472 ntAPPRIS P1 TSL 1 (best) BASIC15.61■□□□□ 0.09
CDH3P22223 MKRN3-203ENST00000568252 1312 ntTSL 1 (best) BASIC15.61■□□□□ 0.09
CDH3P22223 TMEM39B-201ENST00000336294 1813 ntAPPRIS P1 TSL 1 (best) BASIC15.61■□□□□ 0.09
CDH3P22223 CT62-201ENST00000449977 1825 ntAPPRIS P2 TSL 1 (best) BASIC15.61■□□□□ 0.09
CDH3P22223 ISG20L2-202ENST00000368219 2310 ntAPPRIS P1 TSL 5 BASIC15.61■□□□□ 0.09
CDH3P22223 PYCR1-201ENST00000329875 1855 ntAPPRIS P1 TSL 1 (best) BASIC15.61■□□□□ 0.09
CDH3P22223 NAT9-210ENST00000580301 1860 ntTSL 1 (best) BASIC15.61■□□□□ 0.09
CDH3P22223 MED26-201ENST00000263390 3174 ntAPPRIS P1 TSL 1 (best) BASIC15.61■□□□□ 0.09
CDH3P22223 POU2F2-207ENST00000529067 2657 ntTSL 1 (best) BASIC15.61■□□□□ 0.09
CDH3P22223 C12orf66-204ENST00000544871 2441 ntTSL 2 BASIC15.6■□□□□ 0.09
CDH3P22223 NAF1-201ENST00000274054 1907 ntAPPRIS P3 TSL 1 (best) BASIC15.6■□□□□ 0.09
CDH3P22223 CCDC90B-203ENST00000525503 1919 ntTSL 1 (best) BASIC15.6■□□□□ 0.09
CDH3P22223 AC100757.3-201ENST00000622361 1406 ntBASIC15.6■□□□□ 0.09
CDH3P22223 MTA1-202ENST00000405646 2709 ntAPPRIS ALT2 TSL 5 BASIC15.6■□□□□ 0.09
CDH3P22223 CCDC40-201ENST00000269318 1970 ntTSL 2 BASIC15.6■□□□□ 0.09
CDH3P22223 RASAL1-207ENST00000548055 2502 ntAPPRIS ALT2 TSL 1 (best) BASIC15.6■□□□□ 0.09
CDH3P22223 UBQLN1-201ENST00000257468 2299 ntTSL 1 (best) BASIC15.6■□□□□ 0.09
CDH3P22223 SLC39A13-201ENST00000354884 2289 ntAPPRIS P1 TSL 1 (best) BASIC15.6■□□□□ 0.09
CDH3P22223 RHOBTB2-206ENST00000522948 4959 ntAPPRIS ALT2 TSL 5 BASIC15.6■□□□□ 0.09
CDH3P22223 MFF-201ENST00000304593 2004 ntAPPRIS P1 TSL 2 BASIC15.6■□□□□ 0.09
CDH3P22223 LINC02370-201ENST00000428272 2009 ntTSL 5 BASIC15.6■□□□□ 0.09
CDH3P22223 AC126755.1-201ENST00000525846 6405 ntBASIC15.6■□□□□ 0.09
CDH3P22223 FASTKD5-201ENST00000380266 2874 ntAPPRIS P1 TSL 1 (best) BASIC15.6■□□□□ 0.09
CDH3P22223 SYT5-201ENST00000354308 3792 ntAPPRIS P1 TSL 1 (best) BASIC15.6■□□□□ 0.09
CDH3P22223 SETD1B-201ENST00000267197 5772 ntAPPRIS ALT2 TSL 5 BASIC15.6■□□□□ 0.09
CDH3P22223 DKKL1-201ENST00000221498 1222 ntAPPRIS P2 TSL 1 (best) BASIC15.6■□□□□ 0.09
CDH3P22223 CCDC12-201ENST00000292314 1017 ntTSL 5 BASIC15.6■□□□□ 0.09
CDH3P22223 RUNDC1-201ENST00000361677 3828 ntAPPRIS P1 TSL 1 (best) BASIC15.6■□□□□ 0.09
CDH3P22223 ZNF593-202ENST00000374266 675 ntAPPRIS P1 TSL 1 (best) BASIC15.6■□□□□ 0.09
CDH3P22223 TMEM120A-203ENST00000439537 1161 ntTSL 1 (best) BASIC15.6■□□□□ 0.09
CDH3P22223 BANF1P1-201ENST00000553684 263 ntBASIC15.6■□□□□ 0.09
CDH3P22223 AC004771.3-201ENST00000574260 551 ntTSL 4 BASIC15.6■□□□□ 0.09
CDH3P22223 AC116003.1-201ENST00000578340 536 ntTSL 3 BASIC15.6■□□□□ 0.09
CDH3P22223 PRKCSH-217ENST00000592741 2100 ntAPPRIS ALT2 TSL 1 (best) BASIC15.6■□□□□ 0.09
CDH3P22223 NRSN1-203ENST00000378478 2408 ntAPPRIS P1 TSL 1 (best) BASIC15.6■□□□□ 0.09
CDH3P22223 ZNF84-202ENST00000392319 7020 ntAPPRIS P2 TSL 1 (best) BASIC15.6■□□□□ 0.09
CDH3P22223 ZNF514-201ENST00000295208 3011 ntAPPRIS P1 TSL 1 (best) BASIC15.6■□□□□ 0.09
CDH3P22223 TLE6-202ENST00000452088 1883 ntAPPRIS P3 TSL 1 (best) BASIC15.6■□□□□ 0.09
CDH3P22223 SIN3B-202ENST00000379803 5129 ntAPPRIS P3 TSL 1 (best) BASIC15.6■□□□□ 0.09
CDH3P22223 ARHGAP27-208ENST00000528384 2296 ntTSL 1 (best) BASIC15.6■□□□□ 0.09
CDH3P22223 BCL2L2-PABPN1-203ENST00000557008 1366 ntAPPRIS P1 TSL 5 BASIC15.6■□□□□ 0.09
CDH3P22223 MAGI1-216ENST00000497477 3555 ntTSL 5 BASIC15.6■□□□□ 0.09
CDH3P22223 SURF4-202ENST00000371989 2984 ntAPPRIS P1 TSL 1 (best) BASIC15.6■□□□□ 0.09
CDH3P22223 CCKAR-201ENST00000295589 1720 ntAPPRIS P1 TSL 1 (best) BASIC15.6■□□□□ 0.09
CDH3P22223 MTHFD1L-203ENST00000367321 3604 ntAPPRIS P3 TSL 1 (best) BASIC15.6■□□□□ 0.09
CDH3P22223 KREMEN1-203ENST00000407188 1422 ntAPPRIS ALT2 TSL 1 (best) BASIC15.6■□□□□ 0.09
CDH3P22223 AC009242.1-201ENST00000634300 2706 ntTSL 5 BASIC15.59■□□□□ 0.09
CDH3P22223 UBTF-201ENST00000302904 4997 ntAPPRIS P1 TSL 2 BASIC15.59■□□□□ 0.09
CDH3P22223 MMP2-201ENST00000219070 3741 ntAPPRIS P1 TSL 1 (best) BASIC15.59■□□□□ 0.09
CDH3P22223 CCHCR1-202ENST00000396263 2490 ntTSL 5 BASIC15.59■□□□□ 0.09
CDH3P22223 MYADML2-201ENST00000409745 2452 ntAPPRIS P1 TSL 1 (best) BASIC15.59■□□□□ 0.09
CDH3P22223 TRIM14-201ENST00000341469 4454 ntAPPRIS P1 TSL 1 (best) BASIC15.59■□□□□ 0.09
CDH3P22223 CIAPIN1-207ENST00000565961 1814 ntTSL 3 BASIC15.59■□□□□ 0.09
CDH3P22223 NBEAL2-205ENST00000450053 8827 ntAPPRIS P1 TSL 2 BASIC15.59■□□□□ 0.09
CDH3P22223 PTBP1-201ENST00000349038 3155 ntAPPRIS P3 TSL 1 (best) BASIC15.59■□□□□ 0.09
CDH3P22223 PTBP1-204ENST00000394601 3185 ntTSL 1 (best) BASIC15.59■□□□□ 0.09
CDH3P22223 LIMS2-205ENST00000409455 2500 ntAPPRIS ALT1 TSL 1 (best) BASIC15.59■□□□□ 0.09
CDH3P22223 CD40-207ENST00000620709 1522 ntTSL 1 (best) BASIC15.59■□□□□ 0.09
CDH3P22223 TXNDC2-201ENST00000306084 1873 ntAPPRIS ALT2 TSL 1 (best) BASIC15.59■□□□□ 0.09
CDH3P22223 OSBPL1A-203ENST00000399441 1887 ntTSL 1 (best) BASIC15.59■□□□□ 0.09
CDH3P22223 CABP1-204ENST00000453000 1857 ntTSL 1 (best) BASIC15.59■□□□□ 0.09
CDH3P22223 CNOT10-202ENST00000331889 2573 ntTSL 1 (best) BASIC15.59■□□□□ 0.09
CDH3P22223 HDAC5-202ENST00000336057 5040 ntTSL 1 (best) BASIC15.59■□□□□ 0.09
CDH3P22223 SNX5-202ENST00000377768 2288 ntAPPRIS P1 TSL 1 (best) BASIC15.59■□□□□ 0.09
CDH3P22223 CBS-204ENST00000398165 2605 ntAPPRIS P1 TSL 1 (best) BASIC15.59■□□□□ 0.09
CDH3P22223 LHCGR-203ENST00000403273 1921 ntTSL 5 BASIC15.59■□□□□ 0.09
CDH3P22223 CHD4-210ENST00000544040 6514 ntAPPRIS ALT2 TSL 5 BASIC15.59■□□□□ 0.09
CDH3P22223 FOXJ2-201ENST00000162391 5523 ntAPPRIS P2 TSL 1 (best) BASIC15.59■□□□□ 0.09
CDH3P22223 CD276-213ENST00000561213 2690 ntAPPRIS ALT2 TSL 2 BASIC15.59■□□□□ 0.09
CDH3P22223 LGALS3BP-218ENST00000591778 1961 ntTSL 2 BASIC15.59■□□□□ 0.09
CDH3P22223 RASA1-201ENST00000274376 3752 ntAPPRIS P3 TSL 1 (best) BASIC15.59■□□□□ 0.09
CDH3P22223 DDB1-201ENST00000301764 4506 ntAPPRIS P1 TSL 1 (best) BASIC15.59■□□□□ 0.09
CDH3P22223 GMNN-201ENST00000230056 1262 ntAPPRIS P1 TSL 1 (best) BASIC15.59■□□□□ 0.09
CDH3P22223 ZUFSP-201ENST00000368573 1225 ntTSL 5 BASIC15.59■□□□□ 0.09
CDH3P22223 VCX3A-201ENST00000381089 995 ntAPPRIS P2 TSL 1 (best) BASIC15.59■□□□□ 0.09
CDH3P22223 RBM39-205ENST00000397370 612 ntTSL 2 BASIC15.59■□□□□ 0.09
CDH3P22223 RBM43-202ENST00000409092 579 ntAPPRIS ALT2 TSL 2 BASIC15.59■□□□□ 0.09
CDH3P22223 AC002310.2-201ENST00000486926 950 ntTSL 2 BASIC15.59■□□□□ 0.09
CDH3P22223 PKD2-202ENST00000502363 1222 ntTSL 5 BASIC15.59■□□□□ 0.09
CDH3P22223 AC114956.2-201ENST00000512498 572 ntTSL 4 BASIC15.59■□□□□ 0.09
CDH3P22223 LY6E-204ENST00000519546 971 ntTSL 2 BASIC15.59■□□□□ 0.09
CDH3P22223 AL139349.1-201ENST00000530479 577 ntTSL 4 BASIC15.59■□□□□ 0.09
CDH3P22223 TOMM5-205ENST00000544379 635 ntTSL 2 BASIC15.59■□□□□ 0.09
CDH3P22223 MIR4745-201ENST00000577608 62 ntBASIC15.59■□□□□ 0.09
CDH3P22223 MIR3197-201ENST00000582241 73 ntBASIC15.59■□□□□ 0.09
CDH3P22223 MIR4321-201ENST00000592276 80 ntBASIC15.59■□□□□ 0.09
CDH3P22223 AQP12B-206ENST00000621682 1080 ntAPPRIS ALT2 TSL 5 BASIC15.59■□□□□ 0.09
CDH3P22223 AL590560.3-201ENST00000623350 461 ntBASIC15.59■□□□□ 0.09
CDH3P22223 APBB2-204ENST00000502841 1681 ntTSL 2 BASIC15.59■□□□□ 0.09
CDH3P22223 HMGA2-210ENST00000541363 8094 ntAPPRIS ALT1 TSL 1 (best) BASIC15.59■□□□□ 0.09
CDH3P22223 BEX4-202ENST00000372695 1328 ntAPPRIS P1 TSL 1 (best) BASIC15.59■□□□□ 0.09
CDH3P22223 PLAGL1-211ENST00000625622 3216 ntAPPRIS P1 TSL 2 BASIC15.59■□□□□ 0.09
CDH3P22223 APH1A-203ENST00000369109 1713 ntAPPRIS P4 TSL 1 (best) BASIC15.59■□□□□ 0.09
CDH3P22223 BEND5-201ENST00000371833 1716 ntAPPRIS P1 TSL 1 (best) BASIC15.59■□□□□ 0.09
CDH3P22223 IL11RA-215ENST00000602473 1388 ntTSL 1 (best) BASIC15.59■□□□□ 0.09
Retrieved 100 of 98,524 protein–RNA pairs in 40.4 ms