Protein–RNA interactions for Protein: P06340

HLA-DOA, HLA class II histocompatibility antigen, DO alpha chain, humanhuman

Predictions only

Length 250 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HLA-DOAP06340 PRKN-203ENST00000366894 1157 ntTSL 5 BASIC18.56■□□□□ 0.56
HLA-DOAP06340 PRAF2-201ENST00000376386 801 ntTSL 2 BASIC18.56■□□□□ 0.56
HLA-DOAP06340 PTPA-213ENST00000419582 952 ntTSL 1 (best) BASIC18.56■□□□□ 0.56
HLA-DOAP06340 GNB3-202ENST00000435982 1110 ntAPPRIS ALT1 TSL 1 (best) BASIC18.56■□□□□ 0.56
HLA-DOAP06340 KRT223P-202ENST00000449164 1292 ntBASIC18.56■□□□□ 0.56
HLA-DOAP06340 LINC01585-201ENST00000500496 1295 ntTSL 1 (best) BASIC18.56■□□□□ 0.56
HLA-DOAP06340 AC104989.1-201ENST00000519711 778 ntBASIC18.56■□□□□ 0.56
HLA-DOAP06340 MUTYH-237ENST00000531105 501 ntTSL 5 BASIC18.56■□□□□ 0.56
HLA-DOAP06340 AP003385.5-201ENST00000533876 555 ntTSL 4 BASIC18.56■□□□□ 0.56
HLA-DOAP06340 GABARAPL1-217ENST00000545887 571 ntAPPRIS P1 TSL 3 BASIC18.56■□□□□ 0.56
HLA-DOAP06340 RORA-AS1-205ENST00000559824 761 ntTSL 3 BASIC18.56■□□□□ 0.56
HLA-DOAP06340 MIF4GD-206ENST00000579119 856 ntTSL 3 BASIC18.56■□□□□ 0.56
HLA-DOAP06340 MIR4313-201ENST00000580760 101 ntBASIC18.56■□□□□ 0.56
HLA-DOAP06340 C19orf53-206ENST00000593274 491 ntTSL 2 BASIC18.56■□□□□ 0.56
HLA-DOAP06340 APOBEC3H-206ENST00000613677 730 ntAPPRIS ALT2 TSL 5 BASIC18.56■□□□□ 0.56
HLA-DOAP06340 POU4F2-201ENST00000281321 3144 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
HLA-DOAP06340 CDC14A-202ENST00000361544 2417 ntAPPRIS P4 TSL 1 (best) BASIC18.56■□□□□ 0.56
HLA-DOAP06340 RASSF8-AS1-202ENST00000500276 2610 ntTSL 2 BASIC18.56■□□□□ 0.56
HLA-DOAP06340 ANKRD35-202ENST00000544626 3093 ntTSL 5 BASIC18.56■□□□□ 0.56
HLA-DOAP06340 TRIM9-201ENST00000298355 5284 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
HLA-DOAP06340 HMGXB3-202ENST00000503427 5275 ntAPPRIS ALT2 TSL 5 BASIC18.56■□□□□ 0.56
HLA-DOAP06340 TUBA1C-201ENST00000301072 3001 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
HLA-DOAP06340 ATG9B-212ENST00000639579 4539 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
HLA-DOAP06340 LZTS3-202ENST00000337576 4238 ntAPPRIS P1 TSL 5 BASIC18.56■□□□□ 0.56
HLA-DOAP06340 CALCB-202ENST00000523376 2258 ntTSL 2 BASIC18.56■□□□□ 0.56
HLA-DOAP06340 PKLR-202ENST00000392414 2479 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
HLA-DOAP06340 AL355493.2-201ENST00000568270 1395 ntTSL 1 (best) BASIC18.55■□□□□ 0.56
HLA-DOAP06340 SCAF1-201ENST00000360565 4306 ntAPPRIS P2 TSL 2 BASIC18.55■□□□□ 0.56
HLA-DOAP06340 CHAD-203ENST00000508540 1789 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
HLA-DOAP06340 AC020916.1-201ENST00000587762 1774 ntBASIC18.55■□□□□ 0.56
HLA-DOAP06340 GRAMD1A-202ENST00000411896 2523 ntAPPRIS ALT2 TSL 2 BASIC18.55■□□□□ 0.56
HLA-DOAP06340 SWAP70-202ENST00000447399 3538 ntTSL 2 BASIC18.55■□□□□ 0.56
HLA-DOAP06340 MTMR1-208ENST00000445323 4516 ntTSL 1 (best) BASIC18.55■□□□□ 0.56
HLA-DOAP06340 LEF1-201ENST00000265165 3068 ntAPPRIS P3 TSL 1 (best) BASIC18.55■□□□□ 0.56
HLA-DOAP06340 KRT9-202ENST00000588431 1493 ntTSL 1 (best) BASIC18.55■□□□□ 0.56
HLA-DOAP06340 LBX2-201ENST00000341396 886 ntTSL 3 BASIC18.55■□□□□ 0.56
HLA-DOAP06340 TNFRSF12A-202ENST00000341627 881 ntTSL 1 (best) BASIC18.55■□□□□ 0.56
HLA-DOAP06340 RHCE-205ENST00000349438 1235 ntTSL 1 (best) BASIC18.55■□□□□ 0.56
HLA-DOAP06340 MBP-203ENST00000359645 1255 ntTSL 1 (best) BASIC18.55■□□□□ 0.56
HLA-DOAP06340 AL157935.1-209ENST00000415141 1105 ntTSL 2 BASIC18.55■□□□□ 0.56
HLA-DOAP06340 AL034550.1-201ENST00000442179 986 ntTSL 1 (best) BASIC18.55■□□□□ 0.56
HLA-DOAP06340 AL355864.2-201ENST00000447420 863 ntBASIC18.55■□□□□ 0.56
HLA-DOAP06340 AP000345.1-201ENST00000454863 569 ntTSL 4 BASIC18.55■□□□□ 0.56
HLA-DOAP06340 CACNA2D4-208ENST00000538027 952 ntTSL 5 BASIC18.55■□□□□ 0.56
HLA-DOAP06340 GZMH-203ENST00000557220 520 ntTSL 1 (best) BASIC18.55■□□□□ 0.56
HLA-DOAP06340 TRAPPC2L-206ENST00000564365 1060 ntTSL 1 (best) BASIC18.55■□□□□ 0.56
HLA-DOAP06340 AC015910.1-201ENST00000579400 975 ntBASIC18.55■□□□□ 0.56
HLA-DOAP06340 GRIA3-205ENST00000611689 936 ntTSL 1 (best) BASIC18.55■□□□□ 0.56
HLA-DOAP06340 EBAG9-209ENST00000614147 1179 ntTSL 5 BASIC18.55■□□□□ 0.56
HLA-DOAP06340 METTL26-214ENST00000614890 801 ntTSL 3 BASIC18.55■□□□□ 0.56
HLA-DOAP06340 MIR6775-201ENST00000617557 69 ntBASIC18.55■□□□□ 0.56
HLA-DOAP06340 COX11-210ENST00000639671 696 ntBASIC18.55■□□□□ 0.56
HLA-DOAP06340 GPAT3-208ENST00000611707 2633 ntAPPRIS P1 TSL 5 BASIC18.55■□□□□ 0.56
HLA-DOAP06340 IQCE-212ENST00000476665 2400 ntAPPRIS ALT2 TSL 2 BASIC18.55■□□□□ 0.56
HLA-DOAP06340 C14orf93-202ENST00000341470 2221 ntTSL 1 (best) BASIC18.55■□□□□ 0.56
HLA-DOAP06340 UNC5C-203ENST00000506749 2220 ntTSL 1 (best) BASIC18.55■□□□□ 0.56
HLA-DOAP06340 MRPL11-201ENST00000310999 1605 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
HLA-DOAP06340 HRAT92-201ENST00000452622 3506 ntTSL 2 BASIC18.55■□□□□ 0.56
HLA-DOAP06340 CYMP-AS1-201ENST00000457402 2351 ntTSL 1 (best) BASIC18.55■□□□□ 0.56
HLA-DOAP06340 PTPRS-205ENST00000588012 5993 ntAPPRIS P3 TSL 1 (best) BASIC18.55■□□□□ 0.56
HLA-DOAP06340 METTL9-201ENST00000358154 3256 ntAPPRIS P3 TSL 1 (best) BASIC18.55■□□□□ 0.56
HLA-DOAP06340 CLDND1-222ENST00000510545 2124 ntAPPRIS P1 TSL 5 BASIC18.55■□□□□ 0.56
HLA-DOAP06340 GPR89B-201ENST00000314163 1934 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
HLA-DOAP06340 CTSB-219ENST00000530640 1389 ntAPPRIS P1 TSL 5 BASIC18.55■□□□□ 0.56
HLA-DOAP06340 OGDH-204ENST00000443864 1744 ntTSL 1 (best) BASIC18.54■□□□□ 0.56
HLA-DOAP06340 KIF13B-206ENST00000524189 8745 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
HLA-DOAP06340 ZMYM3-202ENST00000373978 1511 ntTSL 5 BASIC18.54■□□□□ 0.56
HLA-DOAP06340 MOG-215ENST00000376888 1529 ntTSL 1 (best) BASIC18.54■□□□□ 0.56
HLA-DOAP06340 LINC00612-201ENST00000538094 2213 ntTSL 2 BASIC18.54■□□□□ 0.56
HLA-DOAP06340 CTSW-201ENST00000307886 1300 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
HLA-DOAP06340 ARFIP1-202ENST00000356064 1302 ntTSL 1 (best) BASIC18.54■□□□□ 0.56
HLA-DOAP06340 NR2C1-201ENST00000330677 2014 ntTSL 5 BASIC18.54■□□□□ 0.56
HLA-DOAP06340 CACNB3-203ENST00000540990 1814 ntTSL 2 BASIC18.54■□□□□ 0.56
HLA-DOAP06340 PMS1-206ENST00000418224 3018 ntTSL 5 BASIC18.54■□□□□ 0.56
HLA-DOAP06340 CRK-202ENST00000398970 3675 ntTSL 1 (best) BASIC18.54■□□□□ 0.56
HLA-DOAP06340 NINJ2-201ENST00000305108 1252 ntAPPRIS P3 TSL 1 (best) BASIC18.54■□□□□ 0.56
HLA-DOAP06340 C14orf178-201ENST00000355883 642 ntAPPRIS P3 TSL 5 BASIC18.54■□□□□ 0.56
HLA-DOAP06340 APOA1-204ENST00000375323 1088 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
HLA-DOAP06340 AC005229.1-201ENST00000392885 409 ntBASIC18.54■□□□□ 0.56
HLA-DOAP06340 RPL28-203ENST00000428193 573 ntTSL 2 BASIC18.54■□□□□ 0.56
HLA-DOAP06340 SVIL-AS1-208ENST00000446807 1007 ntTSL 3 BASIC18.54■□□□□ 0.56
HLA-DOAP06340 ASF1B-202ENST00000474890 765 ntTSL 2 BASIC18.54■□□□□ 0.56
HLA-DOAP06340 AC026410.3-201ENST00000514280 936 ntBASIC18.54■□□□□ 0.56
HLA-DOAP06340 SPDYE16-201ENST00000515340 858 ntAPPRIS ALT2 TSL 5 BASIC18.54■□□□□ 0.56
HLA-DOAP06340 AC083973.1-206ENST00000518213 815 ntTSL 3 BASIC18.54■□□□□ 0.56
HLA-DOAP06340 ST8SIA2-202ENST00000539113 1089 ntTSL 1 (best) BASIC18.54■□□□□ 0.56
HLA-DOAP06340 SNX29P1-201ENST00000548357 1007 ntBASIC18.54■□□□□ 0.56
HLA-DOAP06340 LINC01595-201ENST00000555406 639 ntTSL 3 BASIC18.54■□□□□ 0.56
HLA-DOAP06340 RPL28-207ENST00000558815 616 ntTSL 2 BASIC18.54■□□□□ 0.56
HLA-DOAP06340 AP001063.1-201ENST00000568332 529 ntBASIC18.54■□□□□ 0.56
HLA-DOAP06340 CLUHP6-201ENST00000580789 941 ntBASIC18.54■□□□□ 0.56
HLA-DOAP06340 SERF2-217ENST00000630046 862 ntTSL 5 BASIC18.54■□□□□ 0.56
HLA-DOAP06340 CDH24-204ENST00000487137 3438 ntAPPRIS P1 TSL 5 BASIC18.54■□□□□ 0.56
HLA-DOAP06340 HCG18-233ENST00000412685 2552 ntTSL 2 BASIC18.54■□□□□ 0.56
HLA-DOAP06340 TBC1D30-203ENST00000539867 2594 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
HLA-DOAP06340 TBP-206ENST00000540980 1701 ntAPPRIS ALT2 TSL 2 BASIC18.54■□□□□ 0.56
HLA-DOAP06340 BTN3A1-204ENST00000425234 1882 ntTSL 2 BASIC18.54■□□□□ 0.56
HLA-DOAP06340 CES3-203ENST00000543856 3178 ntTSL 2 BASIC18.54■□□□□ 0.56
HLA-DOAP06340 NSFL1C-206ENST00000476071 2800 ntTSL 5 BASIC18.54■□□□□ 0.56
HLA-DOAP06340 UIMC1-201ENST00000377227 2570 ntAPPRIS P1 TSL 1 (best) BASIC18.53■□□□□ 0.56
Retrieved 100 of 98,524 protein–RNA pairs in 63.3 ms