Protein–RNA interactions for Protein: O60902

SHOX2, Short stature homeobox protein 2, humanhuman

Predicted RBP Predictions only

Length 331 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHOX2O60902 KRT8P26-201ENST00000534154 1276 ntBASIC15.87■□□□□ 0.13
SHOX2O60902 AC139749.1-201ENST00000534584 1094 ntTSL 3 BASIC15.87■□□□□ 0.13
SHOX2O60902 MCRIP1-206ENST00000573478 1123 ntTSL 2 BASIC15.87■□□□□ 0.13
SHOX2O60902 AC020558.2-201ENST00000582325 795 ntTSL 3 BASIC15.87■□□□□ 0.13
SHOX2O60902 CRMP1-205ENST00000512574 2764 ntTSL 2 BASIC15.87■□□□□ 0.13
SHOX2O60902 HPCAL1-202ENST00000381765 1904 ntAPPRIS P1 TSL 2 BASIC15.87■□□□□ 0.13
SHOX2O60902 TMEM143-201ENST00000293261 2560 ntAPPRIS P1 TSL 1 (best) BASIC15.87■□□□□ 0.13
SHOX2O60902 THBS4-201ENST00000350881 3222 ntAPPRIS P3 TSL 1 (best) BASIC15.87■□□□□ 0.13
SHOX2O60902 ANKRD13B-201ENST00000394859 3214 ntAPPRIS P1 TSL 2 BASIC15.87■□□□□ 0.13
SHOX2O60902 AC011455.3-201ENST00000599996 1967 ntAPPRIS P1 TSL 2 BASIC15.87■□□□□ 0.13
SHOX2O60902 PHTF1-203ENST00000369600 3075 ntTSL 5 BASIC15.87■□□□□ 0.13
SHOX2O60902 CACNG5-202ENST00000533854 1311 ntAPPRIS P1 TSL 2 BASIC15.87■□□□□ 0.13
SHOX2O60902 HADH-202ENST00000403312 1752 ntTSL 5 BASIC15.87■□□□□ 0.13
SHOX2O60902 TRAF3-204ENST00000539721 1786 ntTSL 2 BASIC15.87■□□□□ 0.13
SHOX2O60902 RNPS1-223ENST00000568631 1792 ntAPPRIS P1 TSL 5 BASIC15.87■□□□□ 0.13
SHOX2O60902 AL512306.2-201ENST00000444037 2219 ntTSL 2 BASIC15.87■□□□□ 0.13
SHOX2O60902 LINC00639-201ENST00000553932 4496 ntTSL 2 BASIC15.87■□□□□ 0.13
SHOX2O60902 C19orf57-201ENST00000346736 2489 ntAPPRIS P2 TSL 2 BASIC15.87■□□□□ 0.13
SHOX2O60902 CLDN19-202ENST00000372539 1586 ntAPPRIS P1 TSL 1 (best) BASIC15.87■□□□□ 0.13
SHOX2O60902 GLYCTK-201ENST00000305690 1371 ntTSL 5 BASIC15.87■□□□□ 0.13
SHOX2O60902 ENO2-211ENST00000541477 2549 ntAPPRIS P1 TSL 2 BASIC15.87■□□□□ 0.13
SHOX2O60902 CCDC43-203ENST00000588210 2067 ntAPPRIS ALT1 TSL 1 (best) BASIC15.87■□□□□ 0.13
SHOX2O60902 CAMSAP3-202ENST00000446248 4179 ntAPPRIS ALT2 TSL 1 (best) BASIC15.87■□□□□ 0.13
SHOX2O60902 MAGI2-218ENST00000630991 2349 ntTSL 2 BASIC15.86■□□□□ 0.13
SHOX2O60902 ATP6AP2-226ENST00000637526 1862 ntAPPRIS ALT2 TSL 5 BASIC15.86■□□□□ 0.13
SHOX2O60902 TJP1-201ENST00000346128 7950 ntAPPRIS P3 TSL 1 (best) BASIC15.86■□□□□ 0.13
SHOX2O60902 PRDM4-201ENST00000228437 4210 ntAPPRIS P1 TSL 2 BASIC15.86■□□□□ 0.13
SHOX2O60902 ZBTB2-201ENST00000325144 3090 ntAPPRIS P1 TSL 1 (best) BASIC15.86■□□□□ 0.13
SHOX2O60902 SYNGAP1-203ENST00000428982 4339 ntTSL 5 BASIC15.86■□□□□ 0.13
SHOX2O60902 CHID1-203ENST00000436108 1477 ntAPPRIS P1 TSL 1 (best) BASIC15.86■□□□□ 0.13
SHOX2O60902 MED25-212ENST00000618715 1467 ntTSL 5 BASIC15.86■□□□□ 0.13
SHOX2O60902 AC113189.2-201ENST00000575310 1975 ntTSL 2 BASIC15.86■□□□□ 0.13
SHOX2O60902 PSEN2-201ENST00000366782 2465 ntTSL 1 (best) BASIC15.86■□□□□ 0.13
SHOX2O60902 ELN-203ENST00000320492 2991 ntAPPRIS ALT2 TSL 2 BASIC15.86■□□□□ 0.13
SHOX2O60902 PHAX-201ENST00000297540 4288 ntAPPRIS P1 TSL 1 (best) BASIC15.86■□□□□ 0.13
SHOX2O60902 ATP2A3-202ENST00000352011 3274 ntTSL 5 BASIC15.86■□□□□ 0.13
SHOX2O60902 NDUFC2-201ENST00000281031 2518 ntAPPRIS P1 TSL 1 (best) BASIC15.86■□□□□ 0.13
SHOX2O60902 MGC16275-201ENST00000499670 2501 ntTSL 1 (best) BASIC15.86■□□□□ 0.13
SHOX2O60902 LSM6-201ENST00000296581 2259 ntAPPRIS P1 TSL 1 (best) BASIC15.86■□□□□ 0.13
SHOX2O60902 UBXN11-205ENST00000374221 1792 ntAPPRIS P4 TSL 2 BASIC15.86■□□□□ 0.13
SHOX2O60902 SLC4A3-202ENST00000317151 4069 ntAPPRIS P1 TSL 5 BASIC15.86■□□□□ 0.13
SHOX2O60902 SPIN2B-202ENST00000333933 1258 ntAPPRIS P1 TSL 1 (best) BASIC15.86■□□□□ 0.13
SHOX2O60902 BAG1-202ENST00000379704 1128 ntAPPRIS ALT2 TSL 1 (best) BASIC15.86■□□□□ 0.13
SHOX2O60902 ABHD11-203ENST00000395147 812 ntTSL 3 BASIC15.86■□□□□ 0.13
SHOX2O60902 FXN-203ENST00000396366 922 ntTSL 2 BASIC15.86■□□□□ 0.13
SHOX2O60902 SMAGP-202ENST00000398453 1062 ntAPPRIS P1 TSL 1 (best) BASIC15.86■□□□□ 0.13
SHOX2O60902 RAC2-202ENST00000401529 569 ntTSL 4 BASIC15.86■□□□□ 0.13
SHOX2O60902 SAPCD2-201ENST00000409687 3848 ntAPPRIS P1 TSL 1 (best) BASIC15.86■□□□□ 0.13
SHOX2O60902 AC005091.1-201ENST00000441955 1190 ntTSL 3 BASIC15.86■□□□□ 0.13
SHOX2O60902 DHRS12-203ENST00000444610 1162 ntAPPRIS P1 TSL 1 (best) BASIC15.86■□□□□ 0.13
SHOX2O60902 LCN10-205ENST00000497771 723 ntAPPRIS P2 TSL 1 (best) BASIC15.86■□□□□ 0.13
SHOX2O60902 NDUFA6-202ENST00000498737 1256 ntTSL 1 (best) BASIC15.86■□□□□ 0.13
SHOX2O60902 C17orf49-208ENST00000552402 760 ntTSL 2 BASIC15.86■□□□□ 0.13
SHOX2O60902 ANAPC11-217ENST00000579978 575 ntAPPRIS P1 TSL 2 BASIC15.86■□□□□ 0.13
SHOX2O60902 NDUFA6-203ENST00000602404 1080 ntAPPRIS P1 TSL 1 (best) BASIC15.86■□□□□ 0.13
SHOX2O60902 Metazoa_SRP.104-201ENST00000622099 280 ntBASIC15.86■□□□□ 0.13
SHOX2O60902 AC244517.11-201ENST00000624192 573 ntTSL 5 BASIC15.86■□□□□ 0.13
SHOX2O60902 SDCBP2-AS1-201ENST00000446423 1811 ntTSL 2 BASIC15.86■□□□□ 0.13
SHOX2O60902 PCDHA3-201ENST00000522353 5260 ntAPPRIS P1 TSL 1 (best) BASIC15.86■□□□□ 0.13
SHOX2O60902 CAB39-203ENST00000410084 1324 ntAPPRIS P1 TSL 1 (best) BASIC15.86■□□□□ 0.13
SHOX2O60902 AGO3-201ENST00000246314 3211 ntTSL 1 (best) BASIC15.86■□□□□ 0.13
SHOX2O60902 SLC35C2-201ENST00000243896 2447 ntAPPRIS P1 TSL 1 (best) BASIC15.86■□□□□ 0.13
SHOX2O60902 NCBP2-204ENST00000427641 1946 ntTSL 2 BASIC15.86■□□□□ 0.13
SHOX2O60902 SLC4A7-210ENST00000440156 4120 ntAPPRIS ALT2 TSL 1 (best) BASIC15.86■□□□□ 0.13
SHOX2O60902 NUTM2HP-201ENST00000442076 2498 ntBASIC15.86■□□□□ 0.13
SHOX2O60902 KDM4F-201ENST00000545950 1917 ntAPPRIS P1 BASIC15.86■□□□□ 0.13
SHOX2O60902 C16orf70-208ENST00000569600 1353 ntAPPRIS P1 TSL 1 (best) BASIC15.86■□□□□ 0.13
SHOX2O60902 TIFA-201ENST00000361717 4157 ntAPPRIS P1 TSL 1 (best) BASIC15.86■□□□□ 0.13
SHOX2O60902 SFXN3-201ENST00000224807 3089 ntTSL 5 BASIC15.86■□□□□ 0.13
SHOX2O60902 HOGA1-203ENST00000370647 1999 ntTSL 1 (best) BASIC15.86■□□□□ 0.13
SHOX2O60902 KCNT1-208ENST00000488444 3696 ntAPPRIS ALT2 TSL 5 BASIC15.86■□□□□ 0.13
SHOX2O60902 NFATC4-202ENST00000413692 5700 ntAPPRIS ALT2 TSL 1 (best) BASIC15.85■□□□□ 0.13
SHOX2O60902 CNOT3-201ENST00000221232 2852 ntAPPRIS P1 TSL 1 (best) BASIC15.85■□□□□ 0.13
SHOX2O60902 ASPH-214ENST00000519234 2874 ntTSL 5 BASIC15.85■□□□□ 0.13
SHOX2O60902 CDK16-211ENST00000518022 2022 ntAPPRIS P1 TSL 2 BASIC15.85■□□□□ 0.13
SHOX2O60902 B3GNT4-202ENST00000535274 2938 ntAPPRIS P1 BASIC15.85■□□□□ 0.13
SHOX2O60902 CASC2-202ENST00000426021 3232 ntTSL 1 (best) BASIC15.85■□□□□ 0.13
SHOX2O60902 ABHD11-201ENST00000222800 1483 ntAPPRIS P3 TSL 1 (best) BASIC15.85■□□□□ 0.13
SHOX2O60902 TNRC18-202ENST00000399434 1459 ntTSL 2 BASIC15.85■□□□□ 0.13
SHOX2O60902 UBAC2-AS1-201ENST00000426037 1771 ntTSL 2 BASIC15.85■□□□□ 0.13
SHOX2O60902 LRRC34-208ENST00000522830 1781 ntAPPRIS ALT2 TSL 5 BASIC15.85■□□□□ 0.13
SHOX2O60902 RPUSD2-201ENST00000315616 2358 ntAPPRIS P3 TSL 1 (best) BASIC15.85■□□□□ 0.13
SHOX2O60902 TIE1-201ENST00000372476 3882 ntAPPRIS P1 TSL 1 (best) BASIC15.85■□□□□ 0.13
SHOX2O60902 TLL1-206ENST00000513213 1829 ntTSL 1 (best) BASIC15.85■□□□□ 0.13
SHOX2O60902 RSRP1-201ENST00000243189 1502 ntAPPRIS P2 TSL 1 (best) BASIC15.85■□□□□ 0.13
SHOX2O60902 AC018529.2-202ENST00000611482 3087 ntBASIC15.85■□□□□ 0.13
SHOX2O60902 PSMD9-207ENST00000541212 2784 ntAPPRIS P2 TSL 1 (best) BASIC15.85■□□□□ 0.13
SHOX2O60902 CAP2-209ENST00000616440 2776 ntTSL 2 BASIC15.85■□□□□ 0.13
SHOX2O60902 VANGL2-201ENST00000368061 5340 ntAPPRIS P1 TSL 2 BASIC15.85■□□□□ 0.13
SHOX2O60902 FLI1-205ENST00000527786 4127 ntAPPRIS P1 TSL 1 (best) BASIC15.85■□□□□ 0.13
SHOX2O60902 OXT-201ENST00000217386 513 ntAPPRIS P1 TSL 1 (best) BASIC15.85■□□□□ 0.13
SHOX2O60902 PHPT1-202ENST00000371661 985 ntTSL 5 BASIC15.85■□□□□ 0.13
SHOX2O60902 SSR4P1-202ENST00000429427 967 ntTSL 5 BASIC15.85■□□□□ 0.13
SHOX2O60902 DAP-202ENST00000432074 1048 ntTSL 2 BASIC15.85■□□□□ 0.13
SHOX2O60902 DMKN-212ENST00000443640 842 ntAPPRIS ALT2 TSL 5 BASIC15.85■□□□□ 0.13
SHOX2O60902 NOL7-202ENST00000451315 1184 ntAPPRIS P1 TSL 1 (best) BASIC15.85■□□□□ 0.13
SHOX2O60902 PRYP5-201ENST00000451909 266 ntBASIC15.85■□□□□ 0.13
SHOX2O60902 LY6E-209ENST00000521003 740 ntAPPRIS P2 TSL 2 BASIC15.85■□□□□ 0.13
SHOX2O60902 COX5A-202ENST00000562233 441 ntTSL 3 BASIC15.85■□□□□ 0.13
SHOX2O60902 COX5A-204ENST00000567270 579 ntTSL 3 BASIC15.85■□□□□ 0.13
Retrieved 100 of 98,524 protein–RNA pairs in 93.1 ms