Protein–RNA interactions for Protein: Q86X40

LRRC28, Leucine-rich repeat-containing protein 28, humanhuman

Predicted RBP Predictions only

Length 367 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LRRC28Q86X40 PGPEP1-209ENST00000604499 769 ntTSL 5 BASIC14.19□□□□□ -0.14
LRRC28Q86X40 BSG-214ENST00000614867 960 ntTSL 3 BASIC14.19□□□□□ -0.14
LRRC28Q86X40 SMN2-216ENST00000638794 846 ntAPPRIS ALT2 TSL 5 BASIC14.19□□□□□ -0.14
LRRC28Q86X40 SHANK3-201ENST00000262795 7091 ntAPPRIS P5 TSL 5 BASIC14.19□□□□□ -0.14
LRRC28Q86X40 WRAP73-202ENST00000378322 1998 ntTSL 1 (best) BASIC14.19□□□□□ -0.14
LRRC28Q86X40 CDH20-203ENST00000538374 2683 ntAPPRIS P1 TSL 1 (best) BASIC14.19□□□□□ -0.14
LRRC28Q86X40 PACSIN2-201ENST00000263246 3249 ntAPPRIS P1 TSL 1 (best) BASIC14.19□□□□□ -0.14
LRRC28Q86X40 VLDLR-202ENST00000382099 3240 ntAPPRIS ALT1 TSL 1 (best) BASIC14.19□□□□□ -0.14
LRRC28Q86X40 AL138694.1-201ENST00000637731 1689 ntAPPRIS P1 TSL 5 BASIC14.19□□□□□ -0.14
LRRC28Q86X40 C16orf58-211ENST00000570164 2783 ntAPPRIS ALT1 TSL 5 BASIC14.19□□□□□ -0.14
LRRC28Q86X40 NDRG2-206ENST00000397844 2096 ntTSL 1 (best) BASIC14.19□□□□□ -0.14
LRRC28Q86X40 SPRY1-207ENST00000610581 2608 ntAPPRIS P1 TSL 3 BASIC14.19□□□□□ -0.14
LRRC28Q86X40 CYB561-203ENST00000392976 3151 ntAPPRIS P1 TSL 3 BASIC14.19□□□□□ -0.14
LRRC28Q86X40 SALL3-205ENST00000575389 3996 ntTSL 5 BASIC14.19□□□□□ -0.14
LRRC28Q86X40 AC005885.1-204ENST00000637885 2885 ntAPPRIS P1 TSL 5 BASIC14.19□□□□□ -0.14
LRRC28Q86X40 AP1M2-207ENST00000590923 1757 ntAPPRIS ALT1 TSL 1 (best) BASIC14.19□□□□□ -0.14
LRRC28Q86X40 CACNA2D3-202ENST00000415676 3661 ntAPPRIS ALT2 TSL 1 (best) BASIC14.19□□□□□ -0.14
LRRC28Q86X40 USP19-205ENST00000398898 4474 ntAPPRIS ALT2 TSL 5 BASIC14.19□□□□□ -0.14
LRRC28Q86X40 IMPDH1-203ENST00000354269 2580 ntTSL 2 BASIC14.19□□□□□ -0.14
LRRC28Q86X40 DEPDC7-202ENST00000311388 2012 ntTSL 1 (best) BASIC14.19□□□□□ -0.14
LRRC28Q86X40 PXN-221ENST00000637617 3246 ntAPPRIS ALT2 TSL 5 BASIC14.19□□□□□ -0.14
LRRC28Q86X40 SMARCA2-203ENST00000349721 5761 ntTSL 5 BASIC14.19□□□□□ -0.14
LRRC28Q86X40 MARK4-202ENST00000300843 5209 ntTSL 1 (best) BASIC14.18□□□□□ -0.14
LRRC28Q86X40 TGM6-201ENST00000202625 2292 ntAPPRIS P1 TSL 1 (best) BASIC14.18□□□□□ -0.14
LRRC28Q86X40 AL928654.2-201ENST00000551271 2279 ntTSL 3 BASIC14.18□□□□□ -0.14
LRRC28Q86X40 FRA10AC1-201ENST00000359204 3089 ntAPPRIS P1 TSL 1 (best) BASIC14.18□□□□□ -0.14
LRRC28Q86X40 PGBD2-201ENST00000329291 2136 ntAPPRIS P4 TSL 1 (best) BASIC14.18□□□□□ -0.14
LRRC28Q86X40 REM2-202ENST00000536884 1331 ntTSL 2 BASIC14.18□□□□□ -0.14
LRRC28Q86X40 ATP5F1-202ENST00000369722 3156 ntAPPRIS P1 TSL 1 (best) BASIC14.18□□□□□ -0.14
LRRC28Q86X40 AC114490.1-201ENST00000417456 3163 ntTSL 2 BASIC14.18□□□□□ -0.14
LRRC28Q86X40 UBE2D1-204ENST00000615793 2621 ntTSL 2 BASIC14.18□□□□□ -0.14
LRRC28Q86X40 FBXL19-202ENST00000380310 3796 ntAPPRIS P2 TSL 2 BASIC14.18□□□□□ -0.14
LRRC28Q86X40 HEMK1-201ENST00000232854 6087 ntAPPRIS P1 TSL 1 (best) BASIC14.18□□□□□ -0.14
LRRC28Q86X40 DLX6-202ENST00000518156 2304 ntAPPRIS P2 TSL 1 (best) BASIC14.18□□□□□ -0.14
LRRC28Q86X40 OPA1-208ENST00000392438 6340 ntAPPRIS ALT1 TSL 1 (best) BASIC14.18□□□□□ -0.14
LRRC28Q86X40 TRAPPC8-210ENST00000582513 3205 ntTSL 1 (best) BASIC14.18□□□□□ -0.14
LRRC28Q86X40 C16orf54-201ENST00000329410 2585 ntAPPRIS P1 TSL 1 (best) BASIC14.18□□□□□ -0.14
LRRC28Q86X40 MAP3K8-201ENST00000263056 3096 ntAPPRIS P1 TSL 1 (best) BASIC14.18□□□□□ -0.14
LRRC28Q86X40 TBRG4-215ENST00000494076 2190 ntAPPRIS P1 TSL 2 BASIC14.18□□□□□ -0.14
LRRC28Q86X40 C22orf39-201ENST00000333059 1221 ntAPPRIS P1 TSL 1 (best) BASIC14.18□□□□□ -0.14
LRRC28Q86X40 ANP32E-201ENST00000369114 1048 ntTSL 3 BASIC14.18□□□□□ -0.14
LRRC28Q86X40 RFXANK-202ENST00000392324 1059 ntTSL 1 (best) BASIC14.18□□□□□ -0.14
LRRC28Q86X40 MIR1233-2-201ENST00000408138 82 ntBASIC14.18□□□□□ -0.14
LRRC28Q86X40 MIR1233-1-201ENST00000408722 82 ntBASIC14.18□□□□□ -0.14
LRRC28Q86X40 CCNL2-202ENST00000408918 1186 ntTSL 1 (best) BASIC14.18□□□□□ -0.14
LRRC28Q86X40 GPX1P2-201ENST00000429271 606 ntBASIC14.18□□□□□ -0.14
LRRC28Q86X40 FIS1-203ENST00000442303 631 ntTSL 3 BASIC14.18□□□□□ -0.14
LRRC28Q86X40 TMEM205-202ENST00000447337 916 ntAPPRIS P1 TSL 2 BASIC14.18□□□□□ -0.14
LRRC28Q86X40 RNASET2-206ENST00000476238 887 ntAPPRIS P1 TSL 5 BASIC14.18□□□□□ -0.14
LRRC28Q86X40 CPSF1-207ENST00000531727 704 ntTSL 3 BASIC14.18□□□□□ -0.14
LRRC28Q86X40 AC005412.3-201ENST00000580309 715 ntBASIC14.18□□□□□ -0.14
LRRC28Q86X40 STX10-207ENST00000589083 1241 ntTSL 1 (best) BASIC14.18□□□□□ -0.14
LRRC28Q86X40 AC010327.4-202ENST00000591484 748 ntBASIC14.18□□□□□ -0.14
LRRC28Q86X40 MED16-214ENST00000617672 554 ntTSL 5 BASIC14.18□□□□□ -0.14
LRRC28Q86X40 AC139530.3-201ENST00000620344 690 ntBASIC14.18□□□□□ -0.14
LRRC28Q86X40 SESN1-202ENST00000356644 2676 ntTSL 1 (best) BASIC14.18□□□□□ -0.14
LRRC28Q86X40 VARS2-201ENST00000321897 4073 ntTSL 1 (best) BASIC14.18□□□□□ -0.14
LRRC28Q86X40 PIP4K2C-207ENST00000550465 1532 ntTSL 2 BASIC14.18□□□□□ -0.14
LRRC28Q86X40 ASAH1-240ENST00000636997 1774 ntTSL 5 BASIC14.18□□□□□ -0.14
LRRC28Q86X40 WSCD1-201ENST00000317744 5819 ntAPPRIS P1 TSL 1 (best) BASIC14.18□□□□□ -0.14
LRRC28Q86X40 AC245052.4-201ENST00000452097 4158 ntTSL 2 BASIC14.18□□□□□ -0.14
LRRC28Q86X40 TOM1L2-201ENST00000318094 2259 ntTSL 2 BASIC14.18□□□□□ -0.14
LRRC28Q86X40 AC013726.1-201ENST00000563747 2285 ntBASIC14.18□□□□□ -0.14
LRRC28Q86X40 ZNF165-201ENST00000377325 2107 ntAPPRIS P1 TSL 1 (best) BASIC14.18□□□□□ -0.14
LRRC28Q86X40 AC068831.3-201ENST00000553321 1858 ntTSL 2 BASIC14.18□□□□□ -0.14
LRRC28Q86X40 TAF1C-216ENST00000566732 2972 ntAPPRIS ALT2 TSL 2 BASIC14.18□□□□□ -0.14
LRRC28Q86X40 YPEL1-201ENST00000339468 4329 ntAPPRIS P1 TSL 1 (best) BASIC14.18□□□□□ -0.14
LRRC28Q86X40 IL1RN-202ENST00000354115 1747 ntTSL 1 (best) BASIC14.18□□□□□ -0.14
LRRC28Q86X40 CPVL-202ENST00000396276 1739 ntAPPRIS P1 TSL 1 (best) BASIC14.18□□□□□ -0.14
LRRC28Q86X40 TCP11L1-201ENST00000334274 2817 ntAPPRIS P1 TSL 1 (best) BASIC14.18□□□□□ -0.14
LRRC28Q86X40 CCDC22-201ENST00000376227 2319 ntAPPRIS P1 TSL 1 (best) BASIC14.18□□□□□ -0.14
LRRC28Q86X40 KIF26A-201ENST00000315264 6714 ntAPPRIS ALT2 TSL 1 (best) BASIC14.18□□□□□ -0.14
LRRC28Q86X40 DCUN1D4-203ENST00000451288 4269 ntTSL 2 BASIC14.18□□□□□ -0.14
LRRC28Q86X40 AC232323.1-201ENST00000540724 2099 ntBASIC14.18□□□□□ -0.14
LRRC28Q86X40 REXO1L5P-201ENST00000622260 2098 ntBASIC14.18□□□□□ -0.14
LRRC28Q86X40 RXRA-202ENST00000481739 1846 ntAPPRIS P1 TSL 1 (best) BASIC14.18□□□□□ -0.14
LRRC28Q86X40 CNN1-210ENST00000592923 1848 ntTSL 2 BASIC14.18□□□□□ -0.14
LRRC28Q86X40 SEC63-201ENST00000369002 6411 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
LRRC28Q86X40 BUD13-201ENST00000260210 2196 ntAPPRIS P3 TSL 1 (best) BASIC14.17□□□□□ -0.14
LRRC28Q86X40 DIAPH2-204ENST00000373054 3376 ntAPPRIS ALT2 TSL 5 BASIC14.17□□□□□ -0.14
LRRC28Q86X40 CNN3-207ENST00000545882 1902 ntTSL 2 BASIC14.17□□□□□ -0.14
LRRC28Q86X40 MICAL1-201ENST00000358577 3142 ntAPPRIS ALT2 TSL 1 (best) BASIC14.17□□□□□ -0.14
LRRC28Q86X40 MCM3AP-AS1-203ENST00000421927 2280 ntTSL 2 BASIC14.17□□□□□ -0.14
LRRC28Q86X40 AL390755.1-201ENST00000623716 2027 ntBASIC14.17□□□□□ -0.14
LRRC28Q86X40 SUCO-210ENST00000616058 5495 ntTSL 1 (best) BASIC14.17□□□□□ -0.14
LRRC28Q86X40 PKN1-202ENST00000342216 2960 ntTSL 2 BASIC14.17□□□□□ -0.14
LRRC28Q86X40 KCNJ14-201ENST00000342291 2960 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
LRRC28Q86X40 CHFR-204ENST00000443047 2990 ntTSL 2 BASIC14.17□□□□□ -0.14
LRRC28Q86X40 TMEM127-201ENST00000258439 6266 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
LRRC28Q86X40 TSC22D1-211ENST00000501704 4026 ntTSL 2 BASIC14.17□□□□□ -0.14
LRRC28Q86X40 EP400-203ENST00000333577 3092 ntTSL 1 (best) BASIC14.17□□□□□ -0.14
LRRC28Q86X40 PLEKHG3-202ENST00000394691 4397 ntTSL 5 BASIC14.17□□□□□ -0.14
LRRC28Q86X40 USP35-203ENST00000529308 4216 ntAPPRIS P1 TSL 5 BASIC14.17□□□□□ -0.14
LRRC28Q86X40 SARM1-208ENST00000585482 10309 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
LRRC28Q86X40 AC007326.2-201ENST00000624224 7579 ntBASIC14.17□□□□□ -0.14
LRRC28Q86X40 B4GALNT1-201ENST00000341156 3036 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
LRRC28Q86X40 PDHX-203ENST00000448838 2653 ntTSL 5 BASIC14.17□□□□□ -0.14
LRRC28Q86X40 POLL-206ENST00000370172 2308 ntTSL 2 BASIC14.17□□□□□ -0.14
LRRC28Q86X40 PRLH-201ENST00000165524 264 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
LRRC28Q86X40 ATP23-201ENST00000300145 1245 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
Retrieved 100 of 98,524 protein–RNA pairs in 32.4 ms