Protein–RNA interactions for Protein: Q6NUP7

PPP4R4, Serine/threonine-protein phosphatase 4 regulatory subunit 4, humanhuman

Predictions only

Length 873 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PPP4R4Q6NUP7 PCSK2-205ENST00000536609 2275 ntTSL 2 BASIC15.29■□□□□ 0.04
PPP4R4Q6NUP7 KCNG4-202ENST00000568181 2199 ntTSL 1 (best) BASIC15.29■□□□□ 0.04
PPP4R4Q6NUP7 LINC00528-201ENST00000600723 2160 ntBASIC15.29■□□□□ 0.04
PPP4R4Q6NUP7 AP000704.1-201ENST00000637940 2182 ntTSL 5 BASIC15.29■□□□□ 0.04
PPP4R4Q6NUP7 ZNF165-201ENST00000377325 2107 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
PPP4R4Q6NUP7 ABHD3-201ENST00000289119 2064 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
PPP4R4Q6NUP7 SPATC1-201ENST00000377470 2007 ntAPPRIS P3 TSL 1 (best) BASIC15.29■□□□□ 0.04
PPP4R4Q6NUP7 CNN3-207ENST00000545882 1902 ntTSL 2 BASIC15.29■□□□□ 0.04
PPP4R4Q6NUP7 SLC35A3-221ENST00000640600 3341 ntTSL 5 BASIC15.29■□□□□ 0.04
PPP4R4Q6NUP7 KIAA0319-204ENST00000537886 6622 ntAPPRIS ALT2 TSL 1 (best) BASIC15.29■□□□□ 0.04
PPP4R4Q6NUP7 COLEC11-209ENST00000418971 1595 ntTSL 2 BASIC15.29■□□□□ 0.04
PPP4R4Q6NUP7 AC008677.1-201ENST00000519230 1561 ntBASIC15.29■□□□□ 0.04
PPP4R4Q6NUP7 TMEM132D-AS2-201ENST00000542578 1568 ntTSL 1 (best) BASIC15.29■□□□□ 0.04
PPP4R4Q6NUP7 THTPA-203ENST00000554789 1595 ntTSL 2 BASIC15.29■□□□□ 0.04
PPP4R4Q6NUP7 WIPI2-211ENST00000484262 1504 ntTSL 1 (best) BASIC15.29■□□□□ 0.04
PPP4R4Q6NUP7 HPGD-202ENST00000296522 3027 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
PPP4R4Q6NUP7 RRP1-207ENST00000497547 3022 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
PPP4R4Q6NUP7 ST7L-202ENST00000358039 4528 ntTSL 1 (best) BASIC15.29■□□□□ 0.04
PPP4R4Q6NUP7 GPX3-209ENST00000614343 1478 ntTSL 1 (best) BASIC15.29■□□□□ 0.04
PPP4R4Q6NUP7 PDXK-210ENST00000468090 7297 ntTSL 1 (best) BASIC15.29■□□□□ 0.04
PPP4R4Q6NUP7 ANAPC13-206ENST00000514612 1420 ntAPPRIS P1 TSL 2 BASIC15.29■□□□□ 0.04
PPP4R4Q6NUP7 JAKMIP3-201ENST00000298622 6626 ntAPPRIS P1 TSL 5 BASIC15.29■□□□□ 0.04
PPP4R4Q6NUP7 CLN3-216ENST00000565316 1318 ntTSL 1 (best) BASIC15.29■□□□□ 0.04
PPP4R4Q6NUP7 GLIDR-202ENST00000625350 2588 ntTSL 1 (best) BASIC15.29■□□□□ 0.04
PPP4R4Q6NUP7 ICOSLG-201ENST00000344330 1009 ntAPPRIS ALT2 TSL 1 (best) BASIC15.29■□□□□ 0.04
PPP4R4Q6NUP7 TNNT3-203ENST00000381557 1019 ntAPPRIS ALT2 TSL 5 BASIC15.29■□□□□ 0.04
PPP4R4Q6NUP7 FABP5-202ENST00000396359 986 ntTSL 5 BASIC15.29■□□□□ 0.04
PPP4R4Q6NUP7 C6orf226-201ENST00000408925 552 ntAPPRIS P1 BASIC15.29■□□□□ 0.04
PPP4R4Q6NUP7 C21orf33-205ENST00000427803 1077 ntTSL 2 BASIC15.29■□□□□ 0.04
PPP4R4Q6NUP7 AL121672.1-201ENST00000439423 1181 ntTSL 1 (best) BASIC15.29■□□□□ 0.04
PPP4R4Q6NUP7 AC097532.1-201ENST00000440802 322 ntTSL 2 BASIC15.29■□□□□ 0.04
PPP4R4Q6NUP7 CDKN2A-209ENST00000498628 926 ntTSL 2 BASIC15.29■□□□□ 0.04
PPP4R4Q6NUP7 SPCS2-202ENST00000526361 772 ntTSL 2 BASIC15.29■□□□□ 0.04
PPP4R4Q6NUP7 AP005019.1-201ENST00000545254 664 ntTSL 3 BASIC15.29■□□□□ 0.04
PPP4R4Q6NUP7 PHOSPHO2-207ENST00000616524 1253 ntAPPRIS P1 TSL 3 BASIC15.29■□□□□ 0.04
PPP4R4Q6NUP7 FAM197Y3-203ENST00000618346 717 ntBASIC15.29■□□□□ 0.04
PPP4R4Q6NUP7 GOLGA7B-201ENST00000370602 6447 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
PPP4R4Q6NUP7 PGBD2-201ENST00000329291 2136 ntAPPRIS P4 TSL 1 (best) BASIC15.29■□□□□ 0.04
PPP4R4Q6NUP7 PTBP1-204ENST00000394601 3185 ntTSL 1 (best) BASIC15.29■□□□□ 0.04
PPP4R4Q6NUP7 PRKD2-206ENST00000595515 3012 ntTSL 2 BASIC15.29■□□□□ 0.04
PPP4R4Q6NUP7 USP25-201ENST00000285679 3973 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
PPP4R4Q6NUP7 SAMD4A-202ENST00000392067 6833 ntAPPRIS P1 TSL 2 BASIC15.29■□□□□ 0.04
PPP4R4Q6NUP7 MYLK-203ENST00000359169 7585 ntAPPRIS P3 TSL 5 BASIC15.29■□□□□ 0.04
PPP4R4Q6NUP7 KLF5-201ENST00000377687 3566 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
PPP4R4Q6NUP7 C9orf78-201ENST00000372447 1795 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
PPP4R4Q6NUP7 IMPDH1-203ENST00000354269 2580 ntTSL 2 BASIC15.29■□□□□ 0.04
PPP4R4Q6NUP7 GRM1-201ENST00000282753 6622 ntAPPRIS P3 TSL 1 (best) BASIC15.28■□□□□ 0.04
PPP4R4Q6NUP7 KCTD15-201ENST00000284006 4918 ntTSL 1 (best) BASIC15.28■□□□□ 0.04
PPP4R4Q6NUP7 HIPK3-202ENST00000379016 7345 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
PPP4R4Q6NUP7 PACSIN2-201ENST00000263246 3249 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
PPP4R4Q6NUP7 SBF1P1-201ENST00000444527 5631 ntBASIC15.28■□□□□ 0.04
PPP4R4Q6NUP7 SYBU-207ENST00000433638 3104 ntAPPRIS ALT2 TSL 5 BASIC15.28■□□□□ 0.04
PPP4R4Q6NUP7 DCUN1D3-201ENST00000324344 6162 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
PPP4R4Q6NUP7 WDR20-202ENST00000322340 3060 ntTSL 1 (best) BASIC15.28■□□□□ 0.04
PPP4R4Q6NUP7 PSMC5-202ENST00000375812 1494 ntTSL 2 BASIC15.28■□□□□ 0.04
PPP4R4Q6NUP7 SLC37A1-201ENST00000352133 3664 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
PPP4R4Q6NUP7 RP1L1-202ENST00000382483 7973 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
PPP4R4Q6NUP7 AC136759.1-203ENST00000527477 2196 ntTSL 1 (best) BASIC15.28■□□□□ 0.04
PPP4R4Q6NUP7 ELMOD1-201ENST00000265840 2852 ntTSL 1 (best) BASIC15.28■□□□□ 0.04
PPP4R4Q6NUP7 CBX3P2-201ENST00000579647 1429 ntTSL 2 BASIC15.28■□□□□ 0.04
PPP4R4Q6NUP7 MKS1-204ENST00000537529 2083 ntTSL 1 (best) BASIC15.28■□□□□ 0.04
PPP4R4Q6NUP7 TMEM177-201ENST00000272521 1394 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
PPP4R4Q6NUP7 TTLL13P-202ENST00000438251 2738 ntAPPRIS P5 TSL 5 BASIC15.28■□□□□ 0.04
PPP4R4Q6NUP7 ASS1-204ENST00000372394 1973 ntAPPRIS P1 TSL 2 BASIC15.28■□□□□ 0.04
PPP4R4Q6NUP7 WRAP73-202ENST00000378322 1998 ntTSL 1 (best) BASIC15.28■□□□□ 0.04
PPP4R4Q6NUP7 RSRP1-202ENST00000431849 1954 ntAPPRIS ALT2 TSL 1 (best) BASIC15.28■□□□□ 0.04
PPP4R4Q6NUP7 CNOT8-202ENST00000403027 2604 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
PPP4R4Q6NUP7 VLDLR-202ENST00000382099 3240 ntAPPRIS ALT1 TSL 1 (best) BASIC15.28■□□□□ 0.04
PPP4R4Q6NUP7 AC023024.1-201ENST00000558838 2590 ntTSL 1 (best) BASIC15.28■□□□□ 0.04
PPP4R4Q6NUP7 HSPB1-201ENST00000248553 909 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
PPP4R4Q6NUP7 YIF1B-203ENST00000339413 1225 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
PPP4R4Q6NUP7 GRM5-203ENST00000393294 1268 ntTSL 1 (best) BASIC15.28■□□□□ 0.04
PPP4R4Q6NUP7 GAR1-202ENST00000394631 1011 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
PPP4R4Q6NUP7 LBH-204ENST00000406087 559 ntTSL 4 BASIC15.28■□□□□ 0.04
PPP4R4Q6NUP7 TREML1-203ENST00000437044 647 ntTSL 1 (best) BASIC15.28■□□□□ 0.04
PPP4R4Q6NUP7 LINC00596-201ENST00000559615 937 ntTSL 5 BASIC15.28■□□□□ 0.04
PPP4R4Q6NUP7 GIPC1-213ENST00000591349 1068 ntTSL 2 BASIC15.28■□□□□ 0.04
PPP4R4Q6NUP7 AC074135.2-201ENST00000600896 510 ntTSL 3 BASIC15.28■□□□□ 0.04
PPP4R4Q6NUP7 AL671883.3-201ENST00000603274 991 ntBASIC15.28■□□□□ 0.04
PPP4R4Q6NUP7 ACSL3-202ENST00000392066 3147 ntAPPRIS P1 TSL 5 BASIC15.28■□□□□ 0.04
PPP4R4Q6NUP7 SIGLEC6-205ENST00000425629 1852 ntAPPRIS P4 TSL 2 BASIC15.28■□□□□ 0.04
PPP4R4Q6NUP7 ARHGEF16-203ENST00000378378 3061 ntAPPRIS P1 TSL 2 BASIC15.28■□□□□ 0.04
PPP4R4Q6NUP7 SEMA3G-201ENST00000231721 4899 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
PPP4R4Q6NUP7 UCKL1-201ENST00000354216 1837 ntTSL 1 (best) BASIC15.28■□□□□ 0.04
PPP4R4Q6NUP7 UNC5C-202ENST00000504962 1789 ntTSL 2 BASIC15.28■□□□□ 0.04
PPP4R4Q6NUP7 REEP3-201ENST00000373758 5205 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
PPP4R4Q6NUP7 AL139082.1-201ENST00000613982 3433 ntTSL 1 (best) BASIC15.28■□□□□ 0.04
PPP4R4Q6NUP7 MFN2-203ENST00000444836 4531 ntAPPRIS P1 TSL 2 BASIC15.28■□□□□ 0.04
PPP4R4Q6NUP7 PRKRIP1-201ENST00000397912 2159 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
PPP4R4Q6NUP7 CPEB2-AS1-201ENST00000500394 1630 ntTSL 1 (best) BASIC15.28■□□□□ 0.04
PPP4R4Q6NUP7 TMEM222-211ENST00000611517 1613 ntAPPRIS P2 TSL 1 (best) BASIC15.28■□□□□ 0.04
PPP4R4Q6NUP7 PXN-221ENST00000637617 3246 ntAPPRIS ALT2 TSL 5 BASIC15.28■□□□□ 0.04
PPP4R4Q6NUP7 CTBP1-209ENST00000510568 4250 ntTSL 1 (best) BASIC15.28■□□□□ 0.04
PPP4R4Q6NUP7 ORMDL3-204ENST00000579695 2106 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
PPP4R4Q6NUP7 CAMK2D-205ENST00000394524 5294 ntAPPRIS ALT1 TSL 2 BASIC15.28■□□□□ 0.04
PPP4R4Q6NUP7 UNG-201ENST00000242576 2071 ntAPPRIS P4 TSL 1 (best) BASIC15.28■□□□□ 0.04
PPP4R4Q6NUP7 AC138517.2-201ENST00000637503 2594 ntAPPRIS P1 TSL 5 BASIC15.28■□□□□ 0.04
PPP4R4Q6NUP7 JPH4-205ENST00000622501 3489 ntAPPRIS ALT1 TSL 5 BASIC15.27■□□□□ 0.04
PPP4R4Q6NUP7 KCNJ14-201ENST00000342291 2960 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.04
PPP4R4Q6NUP7 NDOR1-202ENST00000371521 2497 ntTSL 1 (best) BASIC15.27■□□□□ 0.04
Retrieved 100 of 98,524 protein–RNA pairs in 30.5 ms