Protein–RNA interactions for Protein: P78395

PRAME, Melanoma antigen preferentially expressed in tumors, humanhuman

Predictions only

Length 509 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PRAMEP78395 PTPN5-201ENST00000358540 3135 ntTSL 1 (best) BASIC16.07■□□□□ 0.16
PRAMEP78395 WIZ-206ENST00000599686 3644 ntTSL 5 BASIC16.07■□□□□ 0.16
PRAMEP78395 IL12RB2-206ENST00000544434 3782 ntTSL 1 (best) BASIC16.07■□□□□ 0.16
PRAMEP78395 COL5A1-208ENST00000618395 8437 ntAPPRIS ALT2 TSL 5 BASIC16.06■□□□□ 0.16
PRAMEP78395 TAP2-201ENST00000374897 5684 ntAPPRIS P2 TSL 1 (best) BASIC16.06■□□□□ 0.16
PRAMEP78395 INPP5D-201ENST00000359570 5274 ntAPPRIS ALT2 TSL 1 (best) BASIC16.06■□□□□ 0.16
PRAMEP78395 ECE1-204ENST00000415912 5099 ntAPPRIS ALT1 TSL 1 (best) BASIC16.06■□□□□ 0.16
PRAMEP78395 RFX1-201ENST00000254325 4332 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
PRAMEP78395 NANOS1-202ENST00000425699 4017 ntAPPRIS P2 BASIC16.06■□□□□ 0.16
PRAMEP78395 CRK-201ENST00000300574 3880 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
PRAMEP78395 UHRF2-201ENST00000276893 3452 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
PRAMEP78395 MAP1LC3B-201ENST00000268607 2688 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
PRAMEP78395 GPR161-202ENST00000367835 2400 ntAPPRIS P1 TSL 2 BASIC16.06■□□□□ 0.16
PRAMEP78395 SLC43A1-204ENST00000528450 2358 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
PRAMEP78395 AC104640.1-201ENST00000562617 2109 ntBASIC16.06■□□□□ 0.16
PRAMEP78395 TMUB2-209ENST00000587989 1969 ntAPPRIS ALT1 TSL 3 BASIC16.06■□□□□ 0.16
PRAMEP78395 KDM5C-205ENST00000404049 5677 ntAPPRIS ALT2 TSL 1 (best) BASIC16.06■□□□□ 0.16
PRAMEP78395 PIGT-201ENST00000279035 1880 ntTSL 2 BASIC16.06■□□□□ 0.16
PRAMEP78395 BNIP3P1-202ENST00000550043 1585 ntBASIC16.06■□□□□ 0.16
PRAMEP78395 NDUFV1-216ENST00000529927 1503 ntAPPRIS ALT1 TSL 1 (best) BASIC16.06■□□□□ 0.16
PRAMEP78395 DDB1-201ENST00000301764 4506 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
PRAMEP78395 UBE2J1-201ENST00000435041 4290 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
PRAMEP78395 TPGS2-220ENST00000610723 1426 ntTSL 3 BASIC16.06■□□□□ 0.16
PRAMEP78395 LLGL2-209ENST00000578363 1393 ntTSL 1 (best) BASIC16.06■□□□□ 0.16
PRAMEP78395 TRIM67-202ENST00000444294 9320 ntAPPRIS ALT1 TSL 5 BASIC16.06■□□□□ 0.16
PRAMEP78395 DKKL1-201ENST00000221498 1222 ntAPPRIS P2 TSL 1 (best) BASIC16.06■□□□□ 0.16
PRAMEP78395 OR52W1-201ENST00000311352 1114 ntAPPRIS P1 BASIC16.06■□□□□ 0.16
PRAMEP78395 NKX2-6-201ENST00000325017 906 ntAPPRIS P1 TSL 2 BASIC16.06■□□□□ 0.16
PRAMEP78395 ITLN1-201ENST00000326245 1183 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
PRAMEP78395 DDT-201ENST00000350608 671 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
PRAMEP78395 TSTD1-203ENST00000368024 457 ntTSL 2 BASIC16.06■□□□□ 0.16
PRAMEP78395 AC004987.2-201ENST00000395959 1148 ntBASIC16.06■□□□□ 0.16
PRAMEP78395 AC211486.1-202ENST00000416371 468 ntBASIC16.06■□□□□ 0.16
PRAMEP78395 AL627223.1-201ENST00000416693 442 ntBASIC16.06■□□□□ 0.16
PRAMEP78395 RPS8P6-201ENST00000426177 609 ntBASIC16.06■□□□□ 0.16
PRAMEP78395 ITPA-203ENST00000455664 729 ntTSL 1 (best) BASIC16.06■□□□□ 0.16
PRAMEP78395 AC026191.1-201ENST00000491930 829 ntTSL 3 BASIC16.06■□□□□ 0.16
PRAMEP78395 AC211476.1-201ENST00000503899 468 ntBASIC16.06■□□□□ 0.16
PRAMEP78395 EHF-205ENST00000527935 557 ntTSL 2 BASIC16.06■□□□□ 0.16
PRAMEP78395 AC018653.3-201ENST00000544657 749 ntTSL 3 BASIC16.06■□□□□ 0.16
PRAMEP78395 LINC01413-201ENST00000564843 772 ntTSL 3 BASIC16.06■□□□□ 0.16
PRAMEP78395 RPL13-214ENST00000567815 712 ntAPPRIS P1 TSL 3 BASIC16.06■□□□□ 0.16
PRAMEP78395 AC103808.2-201ENST00000582755 594 ntTSL 4 BASIC16.06■□□□□ 0.16
PRAMEP78395 CIRBP-204ENST00000585630 870 ntAPPRIS P3 TSL 3 BASIC16.06■□□□□ 0.16
PRAMEP78395 AC004835.2-201ENST00000603762 682 ntBASIC16.06■□□□□ 0.16
PRAMEP78395 AC108010.1-201ENST00000605862 1107 ntTSL 5 BASIC16.06■□□□□ 0.16
PRAMEP78395 LINC01128-208ENST00000608189 824 ntTSL 5 BASIC16.06■□□□□ 0.16
PRAMEP78395 B3GALNT1-203ENST00000392781 3606 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
PRAMEP78395 SYT5-207ENST00000590851 3619 ntTSL 2 BASIC16.06■□□□□ 0.16
PRAMEP78395 NR4A3-201ENST00000330847 4982 ntAPPRIS P4 TSL 5 BASIC16.06■□□□□ 0.16
PRAMEP78395 GAS2L2-201ENST00000604063 2661 ntAPPRIS ALT2 TSL 5 BASIC16.06■□□□□ 0.16
PRAMEP78395 ATG9A-205ENST00000409618 4025 ntAPPRIS P1 TSL 5 BASIC16.06■□□□□ 0.16
PRAMEP78395 AC009053.1-201ENST00000566802 2320 ntTSL 1 (best) BASIC16.06■□□□□ 0.16
PRAMEP78395 WDR97-201ENST00000323662 6916 ntAPPRIS P1 TSL 5 BASIC16.06■□□□□ 0.16
PRAMEP78395 SIGLEC10-201ENST00000339313 2256 ntAPPRIS P3 TSL 1 (best) BASIC16.06■□□□□ 0.16
PRAMEP78395 ACP2-201ENST00000256997 2203 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
PRAMEP78395 ZNF451-201ENST00000357489 4998 ntAPPRIS P3 TSL 1 (best) BASIC16.06■□□□□ 0.16
PRAMEP78395 ABHD3-201ENST00000289119 2064 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
PRAMEP78395 RPS23-201ENST00000296674 3437 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
PRAMEP78395 LINC00668-206ENST00000581725 1902 ntTSL 2 BASIC16.06■□□□□ 0.16
PRAMEP78395 UEVLD-203ENST00000379387 1848 ntTSL 2 BASIC16.05■□□□□ 0.16
PRAMEP78395 CIAPIN1-207ENST00000565961 1814 ntTSL 3 BASIC16.05■□□□□ 0.16
PRAMEP78395 SLC17A3-202ENST00000360657 1750 ntTSL 2 BASIC16.05■□□□□ 0.16
PRAMEP78395 C14orf79-205ENST00000549240 2503 ntAPPRIS ALT2 TSL 2 BASIC16.05■□□□□ 0.16
PRAMEP78395 PTPRU-201ENST00000345512 4470 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
PRAMEP78395 GFOD1-206ENST00000612338 2481 ntTSL 2 BASIC16.05■□□□□ 0.16
PRAMEP78395 CAMKK2-203ENST00000347034 5218 ntAPPRIS ALT2 TSL 1 (best) BASIC16.05■□□□□ 0.16
PRAMEP78395 SATB2-205ENST00000443023 6194 ntTSL 5 BASIC16.05■□□□□ 0.16
PRAMEP78395 KCNK9-203ENST00000520439 1441 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
PRAMEP78395 TOM1L2-209ENST00000540946 1420 ntTSL 2 BASIC16.05■□□□□ 0.16
PRAMEP78395 NID1-201ENST00000264187 5864 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
PRAMEP78395 CCAR2-201ENST00000308511 4853 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
PRAMEP78395 ARMC12-201ENST00000288065 1169 ntTSL 1 (best) BASIC16.05■□□□□ 0.16
PRAMEP78395 YIF1B-201ENST00000329420 964 ntTSL 3 BASIC16.05■□□□□ 0.16
PRAMEP78395 ZNF295-AS1-202ENST00000429739 783 ntTSL 1 (best) BASIC16.05■□□□□ 0.16
PRAMEP78395 LINC00899-202ENST00000444890 493 ntTSL 3 BASIC16.05■□□□□ 0.16
PRAMEP78395 ALG1L8P-201ENST00000533887 760 ntBASIC16.05■□□□□ 0.16
PRAMEP78395 AC092718.3-202ENST00000564536 1032 ntAPPRIS P5 TSL 5 BASIC16.05■□□□□ 0.16
PRAMEP78395 NAA38-207ENST00000576861 556 ntTSL 3 BASIC16.05■□□□□ 0.16
PRAMEP78395 PYCR1-207ENST00000577756 1144 ntTSL 2 BASIC16.05■□□□□ 0.16
PRAMEP78395 LINC00466-208ENST00000635218 1217 ntTSL 5 BASIC16.05■□□□□ 0.16
PRAMEP78395 SHISA5-210ENST00000444115 2081 ntTSL 2 BASIC16.05■□□□□ 0.16
PRAMEP78395 SUN2-203ENST00000406622 2725 ntAPPRIS P1 TSL 2 BASIC16.05■□□□□ 0.16
PRAMEP78395 CSNK1A1-202ENST00000377843 2559 ntAPPRIS ALT1 TSL 1 (best) BASIC16.05■□□□□ 0.16
PRAMEP78395 PHLDA1-203ENST00000619060 5913 ntAPPRIS P2 TSL 1 (best) BASIC16.05■□□□□ 0.16
PRAMEP78395 AC019205.2-202ENST00000441363 2403 ntTSL 5 BASIC16.05■□□□□ 0.16
PRAMEP78395 CXCL6-201ENST00000226317 1718 ntAPPRIS P2 TSL 1 (best) BASIC16.05■□□□□ 0.16
PRAMEP78395 AL136982.4-201ENST00000437689 1740 ntBASIC16.05■□□□□ 0.16
PRAMEP78395 RASD2-201ENST00000216127 3412 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
PRAMEP78395 MFSD14B-201ENST00000375344 3420 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
PRAMEP78395 SLC34A2-202ENST00000503434 2174 ntAPPRIS ALT2 TSL 1 (best) BASIC16.04■□□□□ 0.16
PRAMEP78395 RBFOX3-212ENST00000584778 1547 ntAPPRIS ALT2 TSL 5 BASIC16.04■□□□□ 0.16
PRAMEP78395 RIMS1-216ENST00000521978 5079 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
PRAMEP78395 RFK-201ENST00000376736 2684 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
PRAMEP78395 ITGB4-206ENST00000579662 5554 ntAPPRIS ALT2 TSL 1 (best) BASIC16.04■□□□□ 0.16
PRAMEP78395 DEPDC7-202ENST00000311388 2012 ntTSL 1 (best) BASIC16.04■□□□□ 0.16
PRAMEP78395 ARHGAP11B-210ENST00000622744 2042 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
PRAMEP78395 MEN1-207ENST00000377326 3150 ntAPPRIS ALT1 TSL 5 BASIC16.04■□□□□ 0.16
PRAMEP78395 CD244-202ENST00000368033 1360 ntAPPRIS ALT2 TSL 1 (best) BASIC16.04■□□□□ 0.16
PRAMEP78395 DKFZP434H168-201ENST00000567381 1905 ntBASIC16.04■□□□□ 0.16
Retrieved 100 of 98,524 protein–RNA pairs in 37.2 ms