Protein–RNA interactions for Protein: Q86TS7

LINC00643, Putative UPF0730 protein encoded by LINC00643, humanhuman

Predictions only

Length 51 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00643Q86TS7 CDKN2B-202ENST00000380142 859 ntTSL 1 (best) BASIC9.85□□□□□ -0.83
LINC00643Q86TS7 KRTAP5-1-201ENST00000382171 942 ntAPPRIS P1 BASIC9.85□□□□□ -0.83
LINC00643Q86TS7 Z98884.1-201ENST00000451646 830 ntTSL 3 BASIC9.85□□□□□ -0.83
LINC00643Q86TS7 AC091390.4-202ENST00000476426 537 ntBASIC9.85□□□□□ -0.83
LINC00643Q86TS7 AC104564.5-201ENST00000584986 278 ntTSL 3 BASIC9.85□□□□□ -0.83
LINC00643Q86TS7 RABAC1-210ENST00000601891 628 ntTSL 3 BASIC9.85□□□□□ -0.83
LINC00643Q86TS7 ACVR1B-202ENST00000415850 1665 ntTSL 2 BASIC9.85□□□□□ -0.83
LINC00643Q86TS7 AL357054.3-201ENST00000607084 2055 ntTSL 5 BASIC9.85□□□□□ -0.83
LINC00643Q86TS7 BID-201ENST00000317361 2495 ntTSL 1 (best) BASIC9.85□□□□□ -0.83
LINC00643Q86TS7 CLCNKA-201ENST00000331433 2475 ntAPPRIS P3 TSL 1 (best) BASIC9.85□□□□□ -0.83
LINC00643Q86TS7 AC104129.1-202ENST00000480694 4481 ntTSL 2 BASIC9.85□□□□□ -0.83
LINC00643Q86TS7 CALR-201ENST00000316448 1903 ntAPPRIS P1 TSL 1 (best) BASIC9.85□□□□□ -0.83
LINC00643Q86TS7 DRC3-202ENST00000399182 1923 ntTSL 1 (best) BASIC9.85□□□□□ -0.83
LINC00643Q86TS7 FAM193A-201ENST00000324666 4846 ntAPPRIS ALT2 TSL 1 (best) BASIC9.85□□□□□ -0.83
LINC00643Q86TS7 MOG-221ENST00000376917 2160 ntAPPRIS ALT2 TSL 1 (best) BASIC9.85□□□□□ -0.83
LINC00643Q86TS7 CCT2-202ENST00000543146 2189 ntTSL 2 BASIC9.85□□□□□ -0.83
LINC00643Q86TS7 GOSR2-235ENST00000640269 2190 ntTSL 5 BASIC9.85□□□□□ -0.83
LINC00643Q86TS7 ST8SIA4-202ENST00000451528 1794 ntTSL 1 (best) BASIC9.85□□□□□ -0.83
LINC00643Q86TS7 GOLGA8VP-201ENST00000559009 1798 ntBASIC9.85□□□□□ -0.83
LINC00643Q86TS7 GIT1-211ENST00000581348 2827 ntAPPRIS ALT2 TSL 2 BASIC9.85□□□□□ -0.83
LINC00643Q86TS7 TBL1X-203ENST00000407597 5596 ntTSL 2 BASIC9.85□□□□□ -0.83
LINC00643Q86TS7 SH2D5-201ENST00000375031 3705 ntTSL 2 BASIC9.85□□□□□ -0.83
LINC00643Q86TS7 FNIP1-205ENST00000615660 6589 ntTSL 5 BASIC9.85□□□□□ -0.83
LINC00643Q86TS7 HIST1H2AG-201ENST00000359193 2250 ntAPPRIS P1 BASIC9.85□□□□□ -0.83
LINC00643Q86TS7 DPYSL5-207ENST00000614712 5128 ntAPPRIS P1 TSL 5 BASIC9.85□□□□□ -0.83
LINC00643Q86TS7 SH3BP5-203ENST00000408919 1880 ntTSL 1 (best) BASIC9.85□□□□□ -0.83
LINC00643Q86TS7 ZSWIM3-201ENST00000255152 2773 ntAPPRIS P1 TSL 1 (best) BASIC9.85□□□□□ -0.83
LINC00643Q86TS7 AC023090.2-201ENST00000625182 2110 ntBASIC9.85□□□□□ -0.83
LINC00643Q86TS7 LIG1-202ENST00000427526 3027 ntAPPRIS ALT2 TSL 2 BASIC9.85□□□□□ -0.83
LINC00643Q86TS7 KCNJ9-201ENST00000368088 4170 ntAPPRIS P1 TSL 1 (best) BASIC9.85□□□□□ -0.83
LINC00643Q86TS7 PXYLP1-201ENST00000286353 3281 ntAPPRIS P1 TSL 1 (best) BASIC9.85□□□□□ -0.83
LINC00643Q86TS7 CYTH1-215ENST00000591455 3286 ntAPPRIS P3 TSL 2 BASIC9.85□□□□□ -0.83
LINC00643Q86TS7 ETV2-203ENST00000402764 1487 ntAPPRIS P3 TSL 1 (best) BASIC9.85□□□□□ -0.83
LINC00643Q86TS7 AAAS-202ENST00000394384 1703 ntTSL 1 (best) BASIC9.85□□□□□ -0.83
LINC00643Q86TS7 AOC1-204ENST00000467291 2857 ntAPPRIS P1 TSL 5 BASIC9.85□□□□□ -0.83
LINC00643Q86TS7 SPTBN2-210ENST00000611817 2890 ntTSL 2 BASIC9.85□□□□□ -0.83
LINC00643Q86TS7 AL512652.2-201ENST00000625156 1716 ntBASIC9.85□□□□□ -0.83
LINC00643Q86TS7 AIFM1-209ENST00000535724 2468 ntTSL 1 (best) BASIC9.84□□□□□ -0.83
LINC00643Q86TS7 CHPF2-204ENST00000495645 2709 ntTSL 2 BASIC9.84□□□□□ -0.83
LINC00643Q86TS7 KIFC3-204ENST00000465878 3225 ntTSL 1 (best) BASIC9.84□□□□□ -0.83
LINC00643Q86TS7 BEND6-203ENST00000370748 3497 ntTSL 1 (best) BASIC9.84□□□□□ -0.83
LINC00643Q86TS7 PROK1-201ENST00000271331 1338 ntAPPRIS P1 TSL 1 (best) BASIC9.84□□□□□ -0.83
LINC00643Q86TS7 MGARP-201ENST00000398955 1339 ntAPPRIS P1 TSL 1 (best) BASIC9.84□□□□□ -0.83
LINC00643Q86TS7 THTPA-203ENST00000554789 1595 ntTSL 2 BASIC9.84□□□□□ -0.83
LINC00643Q86TS7 RRAGB-202ENST00000374941 2061 ntTSL 1 (best) BASIC9.84□□□□□ -0.83
LINC00643Q86TS7 MPRIP-202ENST00000341712 3846 ntAPPRIS P3 TSL 5 BASIC9.84□□□□□ -0.83
LINC00643Q86TS7 GIPC3-201ENST00000322315 4335 ntAPPRIS P1 TSL 1 (best) BASIC9.84□□□□□ -0.83
LINC00643Q86TS7 MYBBP1A-201ENST00000254718 4807 ntAPPRIS P3 TSL 1 (best) BASIC9.84□□□□□ -0.83
LINC00643Q86TS7 SPOCK2-201ENST00000317376 5328 ntAPPRIS P2 TSL 1 (best) BASIC9.84□□□□□ -0.83
LINC00643Q86TS7 DYSF-206ENST00000409744 6564 ntAPPRIS ALT2 TSL 1 (best) BASIC9.84□□□□□ -0.83
LINC00643Q86TS7 DYSF-209ENST00000410041 6594 ntAPPRIS ALT2 TSL 1 (best) BASIC9.84□□□□□ -0.83
LINC00643Q86TS7 CCR7-201ENST00000246657 2173 ntAPPRIS P1 TSL 1 (best) BASIC9.84□□□□□ -0.83
LINC00643Q86TS7 NPNT-211ENST00000506666 2187 ntTSL 2 BASIC9.84□□□□□ -0.83
LINC00643Q86TS7 COTL1-203ENST00000564057 1677 ntTSL 5 BASIC9.84□□□□□ -0.83
LINC00643Q86TS7 ROBO1-213ENST00000618846 7483 ntTSL 5 BASIC9.84□□□□□ -0.83
LINC00643Q86TS7 CSF2RB-202ENST00000403662 4863 ntAPPRIS P2 TSL 5 BASIC9.84□□□□□ -0.83
LINC00643Q86TS7 ATN1-201ENST00000356654 4351 ntAPPRIS P1 TSL 1 (best) BASIC9.84□□□□□ -0.83
LINC00643Q86TS7 SPATC1-201ENST00000377470 2007 ntAPPRIS P3 TSL 1 (best) BASIC9.84□□□□□ -0.83
LINC00643Q86TS7 INHBA-205ENST00000638023 2002 ntAPPRIS P1 TSL 5 BASIC9.84□□□□□ -0.83
LINC00643Q86TS7 RAB40A-202ENST00000372633 3126 ntAPPRIS P1 BASIC9.84□□□□□ -0.83
LINC00643Q86TS7 FOXD4L5-201ENST00000377420 3109 ntAPPRIS P1 BASIC9.84□□□□□ -0.83
LINC00643Q86TS7 ETV4-205ENST00000545954 1775 ntTSL 2 BASIC9.84□□□□□ -0.83
LINC00643Q86TS7 FOXM1-210ENST00000627656 3487 ntAPPRIS ALT1 TSL 1 (best) BASIC9.84□□□□□ -0.83
LINC00643Q86TS7 IFT57-201ENST00000264538 3203 ntAPPRIS P1 TSL 1 (best) BASIC9.84□□□□□ -0.83
LINC00643Q86TS7 AC015712.2-202ENST00000560068 3213 ntTSL 1 (best) BASIC9.84□□□□□ -0.83
LINC00643Q86TS7 GAR1-201ENST00000226796 1224 ntAPPRIS P1 TSL 1 (best) BASIC9.84□□□□□ -0.83
LINC00643Q86TS7 SMG9-201ENST00000270066 5510 ntAPPRIS P1 TSL 1 (best) BASIC9.84□□□□□ -0.83
LINC00643Q86TS7 MRPS24-201ENST00000317534 707 ntAPPRIS P1 TSL 1 (best) BASIC9.84□□□□□ -0.83
LINC00643Q86TS7 TNFRSF25-201ENST00000348333 1119 ntTSL 1 (best) BASIC9.84□□□□□ -0.83
LINC00643Q86TS7 TNFRSF25-202ENST00000351748 705 ntTSL 1 (best) BASIC9.84□□□□□ -0.83
LINC00643Q86TS7 CNIH4-203ENST00000366858 702 ntTSL 3 BASIC9.84□□□□□ -0.83
LINC00643Q86TS7 FAM72A-203ENST00000367129 676 ntTSL 3 BASIC9.84□□□□□ -0.83
LINC00643Q86TS7 RTCA-202ENST00000370126 538 ntTSL 1 (best) BASIC9.84□□□□□ -0.83
LINC00643Q86TS7 RTL8A-201ENST00000370775 1244 ntAPPRIS P1 BASIC9.84□□□□□ -0.83
LINC00643Q86TS7 EIF6-203ENST00000374450 1289 ntAPPRIS P1 TSL 1 (best) BASIC9.84□□□□□ -0.83
LINC00643Q86TS7 CDC37L1-202ENST00000381858 1244 ntTSL 5 BASIC9.84□□□□□ -0.83
LINC00643Q86TS7 HOXA9-202ENST00000396345 797 ntTSL 2 BASIC9.84□□□□□ -0.83
LINC00643Q86TS7 ARL6IP4-205ENST00000412505 818 ntTSL 5 BASIC9.84□□□□□ -0.83
LINC00643Q86TS7 FAM72A-205ENST00000468509 629 ntTSL 5 BASIC9.84□□□□□ -0.83
LINC00643Q86TS7 AC035140.1-201ENST00000507957 493 ntTSL 3 BASIC9.84□□□□□ -0.83
LINC00643Q86TS7 SENCR-201ENST00000526269 1298 ntTSL 1 (best) BASIC9.84□□□□□ -0.83
LINC00643Q86TS7 TMEM218-207ENST00000528724 1117 ntTSL 5 BASIC9.84□□□□□ -0.83
LINC00643Q86TS7 TMEM218-214ENST00000532156 954 ntTSL 1 (best) BASIC9.84□□□□□ -0.83
LINC00643Q86TS7 ADGRD1-AS1-202ENST00000542980 1277 ntTSL 4 BASIC9.84□□□□□ -0.83
LINC00643Q86TS7 AC104390.1-201ENST00000555663 520 ntBASIC9.84□□□□□ -0.83
LINC00643Q86TS7 DUX4L17-201ENST00000557360 1267 ntBASIC9.84□□□□□ -0.83
LINC00643Q86TS7 FXYD1-204ENST00000588081 645 ntAPPRIS P1 TSL 1 (best) BASIC9.84□□□□□ -0.83
LINC00643Q86TS7 PHOSPHO2-207ENST00000616524 1253 ntAPPRIS P1 TSL 3 BASIC9.84□□□□□ -0.83
LINC00643Q86TS7 PHOSPHO2-208ENST00000617738 1053 ntAPPRIS P1 TSL 2 BASIC9.84□□□□□ -0.83
LINC00643Q86TS7 ACSM2A-202ENST00000396104 2734 ntAPPRIS P1 TSL 1 (best) BASIC9.84□□□□□ -0.83
LINC00643Q86TS7 ARAF-203ENST00000377045 2458 ntAPPRIS P3 TSL 1 (best) BASIC9.84□□□□□ -0.83
LINC00643Q86TS7 TBPL1-208ENST00000613034 1625 ntAPPRIS P1 TSL 2 BASIC9.84□□□□□ -0.83
LINC00643Q86TS7 ILDR1-202ENST00000344209 2226 ntAPPRIS ALT2 TSL 1 (best) BASIC9.84□□□□□ -0.83
LINC00643Q86TS7 AL158154.2-201ENST00000585776 2208 ntTSL 2 BASIC9.84□□□□□ -0.83
LINC00643Q86TS7 ALK-205ENST00000618119 4646 ntTSL 5 BASIC9.84□□□□□ -0.83
LINC00643Q86TS7 AC068760.1-201ENST00000493579 1953 ntBASIC9.84□□□□□ -0.83
LINC00643Q86TS7 AC134407.2-201ENST00000625089 1978 ntBASIC9.84□□□□□ -0.83
LINC00643Q86TS7 ODF3L2-202ENST00000382696 1393 ntAPPRIS ALT2 TSL 1 (best) BASIC9.84□□□□□ -0.83
LINC00643Q86TS7 DYSF-203ENST00000409366 6606 ntAPPRIS ALT2 TSL 1 (best) BASIC9.84□□□□□ -0.83
LINC00643Q86TS7 DYSF-205ENST00000409651 6636 ntAPPRIS ALT2 TSL 1 (best) BASIC9.84□□□□□ -0.83
Retrieved 100 of 98,524 protein–RNA pairs in 41.5 ms