Protein–RNA interactions for Protein: Q9Y5P4

COL4A3BP, Collagen type IV alpha-3-binding protein, humanhuman

Predictions only

Length 624 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A3BPQ9Y5P4 KCNA5-201ENST00000252321 2800 ntAPPRIS P1 BASIC17.8■□□□□ 0.44
COL4A3BPQ9Y5P4 C2orf40-201ENST00000238044 789 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
COL4A3BPQ9Y5P4 ENDOV-201ENST00000323854 1226 ntTSL 1 (best) BASIC17.8■□□□□ 0.44
COL4A3BPQ9Y5P4 PRDX5-202ENST00000347941 463 ntTSL 1 (best) BASIC17.8■□□□□ 0.44
COL4A3BPQ9Y5P4 FCRLB-204ENST00000367946 1152 ntTSL 1 (best) BASIC17.8■□□□□ 0.44
COL4A3BPQ9Y5P4 C11orf88-202ENST00000375618 712 ntAPPRIS ALT2 TSL 1 (best) BASIC17.8■□□□□ 0.44
COL4A3BPQ9Y5P4 GABARAPL1-202ENST00000421801 855 ntTSL 2 BASIC17.8■□□□□ 0.44
COL4A3BPQ9Y5P4 AL161785.2-201ENST00000427080 966 ntTSL 3 BASIC17.8■□□□□ 0.44
COL4A3BPQ9Y5P4 CPLX2-206ENST00000512824 518 ntTSL 4 BASIC17.8■□□□□ 0.44
COL4A3BPQ9Y5P4 POLD4-211ENST00000539074 714 ntTSL 3 BASIC17.8■□□□□ 0.44
COL4A3BPQ9Y5P4 AC007406.4-201ENST00000539568 765 ntTSL 1 (best) BASIC17.8■□□□□ 0.44
COL4A3BPQ9Y5P4 AC010336.2-201ENST00000564226 506 ntBASIC17.8■□□□□ 0.44
COL4A3BPQ9Y5P4 SSH2-210ENST00000582084 560 ntTSL 3 BASIC17.8■□□□□ 0.44
COL4A3BPQ9Y5P4 AC008738.7-201ENST00000609744 511 ntBASIC17.8■□□□□ 0.44
COL4A3BPQ9Y5P4 HIST1H3D-202ENST00000635200 948 ntAPPRIS P1 TSL 3 BASIC17.8■□□□□ 0.44
COL4A3BPQ9Y5P4 AC005622.1-202ENST00000637093 1543 ntTSL 5 BASIC17.8■□□□□ 0.44
COL4A3BPQ9Y5P4 TRIML1-201ENST00000332517 1797 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
COL4A3BPQ9Y5P4 HTR1B-201ENST00000369947 2021 ntAPPRIS P1 BASIC17.8■□□□□ 0.44
COL4A3BPQ9Y5P4 AL139384.1-201ENST00000612143 3047 ntBASIC17.8■□□□□ 0.44
COL4A3BPQ9Y5P4 ZBTB9-201ENST00000395064 2716 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
COL4A3BPQ9Y5P4 SRGAP2C-201ENST00000304465 1477 ntTSL 5 BASIC17.8■□□□□ 0.44
COL4A3BPQ9Y5P4 SRGAP2-201ENST00000419187 1477 ntTSL 5 BASIC17.8■□□□□ 0.44
COL4A3BPQ9Y5P4 SRGAP2B-205ENST00000619678 1477 ntTSL 5 BASIC17.8■□□□□ 0.44
COL4A3BPQ9Y5P4 PPP4R3A-205ENST00000554684 4108 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
COL4A3BPQ9Y5P4 WDR45-202ENST00000356463 1688 ntTSL 1 (best) BASIC17.8■□□□□ 0.44
COL4A3BPQ9Y5P4 UPK3B-202ENST00000334348 2373 ntAPPRIS ALT2 TSL 2 BASIC17.8■□□□□ 0.44
COL4A3BPQ9Y5P4 MCF2L2-208ENST00000473233 4748 ntAPPRIS ALT2 TSL 5 BASIC17.8■□□□□ 0.44
COL4A3BPQ9Y5P4 CRTC2-202ENST00000368630 1635 ntTSL 2 BASIC17.8■□□□□ 0.44
COL4A3BPQ9Y5P4 PEX6-202ENST00000304611 3478 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
COL4A3BPQ9Y5P4 DUSP26-203ENST00000523956 1373 ntAPPRIS P1 TSL 5 BASIC17.79■□□□□ 0.44
COL4A3BPQ9Y5P4 TDG-209ENST00000544861 1387 ntTSL 2 BASIC17.79■□□□□ 0.44
COL4A3BPQ9Y5P4 TCP10-201ENST00000366827 2250 ntAPPRIS ALT2 TSL 5 BASIC17.79■□□□□ 0.44
COL4A3BPQ9Y5P4 PEX5-206ENST00000434354 2253 ntTSL 2 BASIC17.79■□□□□ 0.44
COL4A3BPQ9Y5P4 ZNF382-202ENST00000423582 2657 ntTSL 1 (best) BASIC17.79■□□□□ 0.44
COL4A3BPQ9Y5P4 AP000253.1-201ENST00000449339 2233 ntTSL 3 BASIC17.79■□□□□ 0.44
COL4A3BPQ9Y5P4 SLC29A1-209ENST00000427851 2171 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
COL4A3BPQ9Y5P4 PRRT2-214ENST00000637064 2153 ntAPPRIS P1 TSL 5 BASIC17.79■□□□□ 0.44
COL4A3BPQ9Y5P4 ACRV1-201ENST00000315608 1042 ntAPPRIS ALT2 TSL 1 (best) BASIC17.79■□□□□ 0.44
COL4A3BPQ9Y5P4 RNF186-201ENST00000375121 1250 ntAPPRIS P1 BASIC17.79■□□□□ 0.44
COL4A3BPQ9Y5P4 LINC00659-201ENST00000412500 540 ntTSL 1 (best) BASIC17.79■□□□□ 0.44
COL4A3BPQ9Y5P4 MSC-AS1-206ENST00000519751 596 ntTSL 4 BASIC17.79■□□□□ 0.44
COL4A3BPQ9Y5P4 AC055854.1-201ENST00000523627 570 ntTSL 4 BASIC17.79■□□□□ 0.44
COL4A3BPQ9Y5P4 ZNF890P-202ENST00000530367 1156 ntBASIC17.79■□□□□ 0.44
COL4A3BPQ9Y5P4 BRK1-201ENST00000530758 1233 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
COL4A3BPQ9Y5P4 PTHLH-206ENST00000538310 854 ntTSL 5 BASIC17.79■□□□□ 0.44
COL4A3BPQ9Y5P4 STOM-203ENST00000538954 1257 ntTSL 5 BASIC17.79■□□□□ 0.44
COL4A3BPQ9Y5P4 PPHLN1-221ENST00000552761 1095 ntAPPRIS ALT2 TSL 1 (best) BASIC17.79■□□□□ 0.44
COL4A3BPQ9Y5P4 COQ9-214ENST00000567933 882 ntTSL 3 BASIC17.79■□□□□ 0.44
COL4A3BPQ9Y5P4 SNHG8-201ENST00000602414 672 ntTSL 1 (best) BASIC17.79■□□□□ 0.44
COL4A3BPQ9Y5P4 SNHG8-205ENST00000602819 470 ntTSL 2 BASIC17.79■□□□□ 0.44
COL4A3BPQ9Y5P4 AC009118.2-201ENST00000613275 655 ntBASIC17.79■□□□□ 0.44
COL4A3BPQ9Y5P4 PDZRN3-201ENST00000263666 4248 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
COL4A3BPQ9Y5P4 RTL6-201ENST00000341255 5495 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
COL4A3BPQ9Y5P4 ZBTB17-216ENST00000537142 2511 ntTSL 2 BASIC17.79■□□□□ 0.44
COL4A3BPQ9Y5P4 ADAMTSL4-204ENST00000369041 2908 ntTSL 5 BASIC17.79■□□□□ 0.44
COL4A3BPQ9Y5P4 SYBU-209ENST00000446070 2919 ntAPPRIS P4 TSL 1 (best) BASIC17.79■□□□□ 0.44
COL4A3BPQ9Y5P4 SPDEF-202ENST00000544425 1866 ntAPPRIS ALT1 TSL 2 BASIC17.79■□□□□ 0.44
COL4A3BPQ9Y5P4 L2HGDH-202ENST00000267436 6414 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
COL4A3BPQ9Y5P4 EFCAB14-201ENST00000371933 5767 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
COL4A3BPQ9Y5P4 PDE4C-202ENST00000355502 5979 ntAPPRIS P3 TSL 2 BASIC17.79■□□□□ 0.44
COL4A3BPQ9Y5P4 CDK11B-204ENST00000407249 2677 ntTSL 1 (best) BASIC17.79■□□□□ 0.44
COL4A3BPQ9Y5P4 ASIC1-201ENST00000228468 4072 ntTSL 1 (best) BASIC17.79■□□□□ 0.44
COL4A3BPQ9Y5P4 SYT6-201ENST00000369547 4369 ntTSL 1 (best) BASIC17.79■□□□□ 0.44
COL4A3BPQ9Y5P4 RAVER2-202ENST00000371072 4362 ntAPPRIS P2 TSL 1 (best) BASIC17.79■□□□□ 0.44
COL4A3BPQ9Y5P4 GABRA5-202ENST00000355395 2183 ntAPPRIS P1 TSL 5 BASIC17.79■□□□□ 0.44
COL4A3BPQ9Y5P4 LYAR-201ENST00000343470 1569 ntAPPRIS P2 TSL 1 (best) BASIC17.79■□□□□ 0.44
COL4A3BPQ9Y5P4 CLDN19-202ENST00000372539 1586 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
COL4A3BPQ9Y5P4 COLEC11-209ENST00000418971 1595 ntTSL 2 BASIC17.79■□□□□ 0.44
COL4A3BPQ9Y5P4 KCNMA1-251ENST00000639090 4319 ntAPPRIS ALT2 TSL 5 BASIC17.79■□□□□ 0.44
COL4A3BPQ9Y5P4 MOB3B-201ENST00000262244 6454 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
COL4A3BPQ9Y5P4 GK2-201ENST00000358842 1942 ntAPPRIS P1 BASIC17.78■□□□□ 0.44
COL4A3BPQ9Y5P4 RNF34-202ENST00000392464 1722 ntTSL 5 BASIC17.78■□□□□ 0.44
COL4A3BPQ9Y5P4 PIP4K2C-207ENST00000550465 1532 ntTSL 2 BASIC17.78■□□□□ 0.44
COL4A3BPQ9Y5P4 ZNF425-201ENST00000378061 3220 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
COL4A3BPQ9Y5P4 PDGFA-201ENST00000354513 1308 ntTSL 1 (best) BASIC17.78■□□□□ 0.44
COL4A3BPQ9Y5P4 CDIP1-209ENST00000567695 2062 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
COL4A3BPQ9Y5P4 DLX4-201ENST00000240306 2034 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
COL4A3BPQ9Y5P4 CISH-201ENST00000348721 2043 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
COL4A3BPQ9Y5P4 RBPMS-204ENST00000397323 2941 ntAPPRIS P3 TSL 1 (best) BASIC17.78■□□□□ 0.44
COL4A3BPQ9Y5P4 NDUFS8-201ENST00000313468 791 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
COL4A3BPQ9Y5P4 BMP2K-201ENST00000335016 3804 ntAPPRIS ALT2 TSL 5 BASIC17.78■□□□□ 0.44
COL4A3BPQ9Y5P4 AC008278.1-201ENST00000431117 568 ntTSL 4 BASIC17.78■□□□□ 0.44
COL4A3BPQ9Y5P4 SHBG-204ENST00000441599 973 ntAPPRIS ALT2 TSL 1 (best) BASIC17.78■□□□□ 0.44
COL4A3BPQ9Y5P4 CXCL6-203ENST00000515050 557 ntAPPRIS ALT1 TSL 1 (best) BASIC17.78■□□□□ 0.44
COL4A3BPQ9Y5P4 ARL6IP1-202ENST00000546206 1107 ntTSL 2 BASIC17.78■□□□□ 0.44
COL4A3BPQ9Y5P4 AL391261.2-201ENST00000554907 773 ntTSL 2 BASIC17.78■□□□□ 0.44
COL4A3BPQ9Y5P4 PRR29-204ENST00000577953 565 ntTSL 4 BASIC17.78■□□□□ 0.44
COL4A3BPQ9Y5P4 AC012615.6-204ENST00000587741 477 ntTSL 3 BASIC17.78■□□□□ 0.44
COL4A3BPQ9Y5P4 AC010619.1-201ENST00000599536 675 ntAPPRIS P1 TSL 5 BASIC17.78■□□□□ 0.44
COL4A3BPQ9Y5P4 AL033527.5-202ENST00000641632 1098 ntBASIC17.78■□□□□ 0.44
COL4A3BPQ9Y5P4 AL031282.2-201ENST00000598846 5079 ntTSL 2 BASIC17.78■□□□□ 0.44
COL4A3BPQ9Y5P4 AC009802.1-201ENST00000637973 1609 ntTSL 5 BASIC17.78■□□□□ 0.44
COL4A3BPQ9Y5P4 VOPP1-207ENST00000428648 2866 ntTSL 2 BASIC17.78■□□□□ 0.44
COL4A3BPQ9Y5P4 RUSC1-203ENST00000368349 1968 ntAPPRIS P3 TSL 1 (best) BASIC17.78■□□□□ 0.44
COL4A3BPQ9Y5P4 GMPPB-201ENST00000308375 3217 ntTSL 2 BASIC17.78■□□□□ 0.44
COL4A3BPQ9Y5P4 RIMS3-201ENST00000372683 1408 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
COL4A3BPQ9Y5P4 GNAL-202ENST00000334049 6535 ntTSL 1 (best) BASIC17.78■□□□□ 0.44
COL4A3BPQ9Y5P4 RAP2C-201ENST00000342983 3896 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
COL4A3BPQ9Y5P4 PRMT6-201ENST00000370078 2616 ntAPPRIS P1 BASIC17.78■□□□□ 0.44
COL4A3BPQ9Y5P4 TFAP2B-202ENST00000393655 5773 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
Retrieved 100 of 98,524 protein–RNA pairs in 64.6 ms