Protein–RNA interactions for Protein: Q8TF72

SHROOM3, Protein Shroom3, humanhuman

Predictions only

Length 1,996 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHROOM3Q8TF72 NUDT1-205ENST00000397048 783 ntTSL 1 (best) BASIC16.18■□□□□ 0.18
SHROOM3Q8TF72 INGX-202ENST00000489074 768 ntBASIC16.18■□□□□ 0.18
SHROOM3Q8TF72 AL132711.1-201ENST00000557546 722 ntTSL 3 BASIC16.18■□□□□ 0.18
SHROOM3Q8TF72 AP3S2-204ENST00000558011 738 ntTSL 3 BASIC16.18■□□□□ 0.18
SHROOM3Q8TF72 KLK15-203ENST00000596931 692 ntTSL 1 (best) BASIC16.18■□□□□ 0.18
SHROOM3Q8TF72 KLK15-204ENST00000598239 855 ntAPPRIS P3 TSL 1 (best) BASIC16.18■□□□□ 0.18
SHROOM3Q8TF72 AC097359.3-201ENST00000603982 1210 ntBASIC16.18■□□□□ 0.18
SHROOM3Q8TF72 IMPAD1-201ENST00000262644 7199 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
SHROOM3Q8TF72 RNPS1-220ENST00000566458 2037 ntTSL 1 (best) BASIC16.18■□□□□ 0.18
SHROOM3Q8TF72 CPA1-201ENST00000011292 1487 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
SHROOM3Q8TF72 SRGAP2C-201ENST00000304465 1477 ntTSL 5 BASIC16.18■□□□□ 0.18
SHROOM3Q8TF72 SRGAP2-201ENST00000419187 1477 ntTSL 5 BASIC16.18■□□□□ 0.18
SHROOM3Q8TF72 SRGAP2B-205ENST00000619678 1477 ntTSL 5 BASIC16.18■□□□□ 0.18
SHROOM3Q8TF72 ZFAND5-205ENST00000376962 2785 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
SHROOM3Q8TF72 ACTL8-201ENST00000375406 1861 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
SHROOM3Q8TF72 ANKRD20A5P-207ENST00000581935 2089 ntTSL 2 BASIC16.18■□□□□ 0.18
SHROOM3Q8TF72 NOP14-201ENST00000314262 2889 ntAPPRIS P3 TSL 1 (best) BASIC16.18■□□□□ 0.18
SHROOM3Q8TF72 SLC47A1-203ENST00000436810 1719 ntTSL 2 BASIC16.18■□□□□ 0.18
SHROOM3Q8TF72 SYT3-201ENST00000338916 2915 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
SHROOM3Q8TF72 SLC18A1-207ENST00000519026 1980 ntTSL 5 BASIC16.17■□□□□ 0.18
SHROOM3Q8TF72 TVP23C-210ENST00000584811 2989 ntTSL 1 (best) BASIC16.17■□□□□ 0.18
SHROOM3Q8TF72 EPHX2-202ENST00000517536 1600 ntTSL 5 BASIC16.17■□□□□ 0.18
SHROOM3Q8TF72 FDPS-202ENST00000368356 1431 ntAPPRIS P3 TSL 2 BASIC16.17■□□□□ 0.18
SHROOM3Q8TF72 FZR1-203ENST00000441788 5212 ntAPPRIS P3 TSL 1 (best) BASIC16.17■□□□□ 0.18
SHROOM3Q8TF72 APOLD1-202ENST00000356591 4646 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
SHROOM3Q8TF72 MED26-201ENST00000263390 3174 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
SHROOM3Q8TF72 MRPL13-201ENST00000306185 1086 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
SHROOM3Q8TF72 C1QA-201ENST00000374642 1143 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
SHROOM3Q8TF72 GABARAPL1-202ENST00000421801 855 ntTSL 2 BASIC16.17■□□□□ 0.18
SHROOM3Q8TF72 CD28-203ENST00000458610 705 ntTSL 1 (best) BASIC16.17■□□□□ 0.18
SHROOM3Q8TF72 LEPROTL1-204ENST00000518192 847 ntTSL 3 BASIC16.17■□□□□ 0.18
SHROOM3Q8TF72 FAM92A-214ENST00000522324 1072 ntTSL 2 BASIC16.17■□□□□ 0.18
SHROOM3Q8TF72 GNG2-213ENST00000556766 2125 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
SHROOM3Q8TF72 HEXIM2-206ENST00000591576 1176 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
SHROOM3Q8TF72 AC243829.4-204ENST00000616926 1115 ntTSL 5 BASIC16.17■□□□□ 0.18
SHROOM3Q8TF72 AL033527.5-202ENST00000641632 1098 ntBASIC16.17■□□□□ 0.18
SHROOM3Q8TF72 MIB1-201ENST00000261537 9576 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
SHROOM3Q8TF72 NAF1-201ENST00000274054 1907 ntAPPRIS P3 TSL 1 (best) BASIC16.17■□□□□ 0.18
SHROOM3Q8TF72 HPCAL1-202ENST00000381765 1904 ntAPPRIS P1 TSL 2 BASIC16.17■□□□□ 0.18
SHROOM3Q8TF72 BRPF1-201ENST00000383829 4736 ntAPPRIS ALT1 TSL 1 (best) BASIC16.17■□□□□ 0.18
SHROOM3Q8TF72 GRB2-202ENST00000316804 3248 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
SHROOM3Q8TF72 CENPT-235ENST00000626059 1737 ntTSL 5 BASIC16.17■□□□□ 0.18
SHROOM3Q8TF72 AC007182.1-201ENST00000455232 2159 ntTSL 1 (best) BASIC16.17■□□□□ 0.18
SHROOM3Q8TF72 STXBP5-207ENST00000546097 2160 ntTSL 1 (best) BASIC16.17■□□□□ 0.18
SHROOM3Q8TF72 IDH3B-201ENST00000380843 1545 ntAPPRIS P4 TSL 1 (best) BASIC16.17■□□□□ 0.18
SHROOM3Q8TF72 RAD51C-215ENST00000583539 1319 ntAPPRIS ALT2 TSL 2 BASIC16.17■□□□□ 0.18
SHROOM3Q8TF72 THEMIS2-202ENST00000373921 2687 ntAPPRIS P1 TSL 5 BASIC16.17■□□□□ 0.18
SHROOM3Q8TF72 LRFN1-201ENST00000248668 3381 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
SHROOM3Q8TF72 RASA4B-202ENST00000465829 2931 ntAPPRIS ALT1 TSL 1 (best) BASIC16.17■□□□□ 0.18
SHROOM3Q8TF72 AC104407.1-201ENST00000511017 1568 ntTSL 3 BASIC16.17■□□□□ 0.18
SHROOM3Q8TF72 CACNA1A-215ENST00000635727 7536 ntAPPRIS ALT2 TSL 5 BASIC16.17■□□□□ 0.18
SHROOM3Q8TF72 FES-204ENST00000414248 2327 ntTSL 2 BASIC16.17■□□□□ 0.18
SHROOM3Q8TF72 STEAP3-202ENST00000393107 1871 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
SHROOM3Q8TF72 ZBTB33-201ENST00000326624 5211 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
SHROOM3Q8TF72 AC073347.1-201ENST00000421633 2643 ntBASIC16.17■□□□□ 0.18
SHROOM3Q8TF72 ADAMTS17-201ENST00000268070 6207 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
SHROOM3Q8TF72 AP001122.1-202ENST00000501648 1916 ntTSL 2 BASIC16.17■□□□□ 0.18
SHROOM3Q8TF72 N4BP3-201ENST00000274605 6080 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
SHROOM3Q8TF72 CDIP1-206ENST00000563507 1463 ntTSL 2 BASIC16.17■□□□□ 0.18
SHROOM3Q8TF72 NIPAL3-204ENST00000374399 1711 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
SHROOM3Q8TF72 NOMO1-207ENST00000610363 3765 ntAPPRIS ALT2 TSL 1 (best) BASIC16.17■□□□□ 0.18
SHROOM3Q8TF72 CHRNA4-201ENST00000370263 5577 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
SHROOM3Q8TF72 NFIC-202ENST00000395111 1755 ntTSL 2 BASIC16.17■□□□□ 0.18
SHROOM3Q8TF72 TMEM239-202ENST00000380585 571 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
SHROOM3Q8TF72 AC091729.2-201ENST00000415656 302 ntTSL 3 BASIC16.17■□□□□ 0.18
SHROOM3Q8TF72 MUSTN1-201ENST00000446157 721 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
SHROOM3Q8TF72 LINC01160-202ENST00000450155 894 ntTSL 3 BASIC16.17■□□□□ 0.18
SHROOM3Q8TF72 AC092910.3-201ENST00000484076 969 ntTSL 1 (best) BASIC16.17■□□□□ 0.18
SHROOM3Q8TF72 AC100810.1-201ENST00000518822 978 ntTSL 2 BASIC16.17■□□□□ 0.18
SHROOM3Q8TF72 SPATA8-AS1-201ENST00000558722 465 ntTSL 3 BASIC16.17■□□□□ 0.18
SHROOM3Q8TF72 HSP90B1-201ENST00000299767 2858 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
SHROOM3Q8TF72 KIAA0391-202ENST00000321130 1589 ntTSL 3 BASIC16.16■□□□□ 0.18
SHROOM3Q8TF72 TMEM53-204ENST00000372243 1579 ntTSL 2 BASIC16.16■□□□□ 0.18
SHROOM3Q8TF72 DMTN-209ENST00000517600 1569 ntTSL 5 BASIC16.16■□□□□ 0.18
SHROOM3Q8TF72 ATP2A3-206ENST00000397043 3197 ntAPPRIS ALT1 TSL 1 (best) BASIC16.16■□□□□ 0.18
SHROOM3Q8TF72 ARMC5-204ENST00000538189 3017 ntAPPRIS ALT2 TSL 2 BASIC16.16■□□□□ 0.18
SHROOM3Q8TF72 GCK-203ENST00000395796 2539 ntTSL 1 (best) BASIC16.16■□□□□ 0.18
SHROOM3Q8TF72 SSR4P1-203ENST00000599569 2260 ntBASIC16.16■□□□□ 0.18
SHROOM3Q8TF72 ZFP28-201ENST00000301318 4096 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
SHROOM3Q8TF72 FBXO22-202ENST00000453211 1486 ntTSL 2 BASIC16.16■□□□□ 0.18
SHROOM3Q8TF72 PRSS54-204ENST00000567164 1799 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
SHROOM3Q8TF72 NKIRAS1-208ENST00000443659 2391 ntAPPRIS P2 TSL 5 BASIC16.16■□□□□ 0.18
SHROOM3Q8TF72 TMEM57-202ENST00000399766 3294 ntTSL 1 (best) BASIC16.16■□□□□ 0.18
SHROOM3Q8TF72 TYSND1-201ENST00000287078 3644 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
SHROOM3Q8TF72 ARHGEF7-214ENST00000478679 1833 ntTSL 2 BASIC16.16■□□□□ 0.18
SHROOM3Q8TF72 PTBP1-202ENST00000350092 3069 ntAPPRIS ALT1 TSL 1 (best) BASIC16.16■□□□□ 0.18
SHROOM3Q8TF72 AC136759.1-203ENST00000527477 2196 ntTSL 1 (best) BASIC16.16■□□□□ 0.18
SHROOM3Q8TF72 AC022144.1-201ENST00000602255 1580 ntBASIC16.16■□□□□ 0.18
SHROOM3Q8TF72 CLPP-201ENST00000245816 1155 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
SHROOM3Q8TF72 VMA21-202ENST00000370361 693 ntTSL 5 BASIC16.16■□□□□ 0.18
SHROOM3Q8TF72 C11orf88-202ENST00000375618 712 ntAPPRIS ALT2 TSL 1 (best) BASIC16.16■□□□□ 0.18
SHROOM3Q8TF72 ZSCAN2-205ENST00000379358 906 ntTSL 1 (best) BASIC16.16■□□□□ 0.18
SHROOM3Q8TF72 CSHL1-204ENST00000392824 823 ntAPPRIS ALT1 TSL 1 (best) BASIC16.16■□□□□ 0.18
SHROOM3Q8TF72 KRT18P64-201ENST00000434946 1219 ntBASIC16.16■□□□□ 0.18
SHROOM3Q8TF72 ZMYND10-AS1-201ENST00000440013 250 ntTSL 3 BASIC16.16■□□□□ 0.18
SHROOM3Q8TF72 LINC01160-201ENST00000441004 768 ntTSL 3 BASIC16.16■□□□□ 0.18
SHROOM3Q8TF72 MLF1-206ENST00000471745 1266 ntTSL 2 BASIC16.16■□□□□ 0.18
SHROOM3Q8TF72 TSC22D3-213ENST00000506081 956 ntTSL 5 BASIC16.16■□□□□ 0.18
SHROOM3Q8TF72 AL596325.1-201ENST00000563991 1082 ntBASIC16.16■□□□□ 0.18
SHROOM3Q8TF72 AC007216.4-201ENST00000574364 562 ntTSL 4 BASIC16.16■□□□□ 0.18
Retrieved 100 of 98,524 protein–RNA pairs in 34.7 ms