Protein–RNA interactions for Protein: Q4VC31

CCDC58, Coiled-coil domain-containing protein 58, humanhuman

Predictions only

Length 144 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC58Q4VC31 LINC01271-201ENST00000441214 2250 ntTSL 1 (best) BASIC14.33□□□□□ -0.12
CCDC58Q4VC31 RCOR3-203ENST00000419091 2041 ntAPPRIS P1 TSL 2 BASIC14.33□□□□□ -0.12
CCDC58Q4VC31 PPL-205ENST00000590782 5845 ntAPPRIS ALT1 TSL 5 BASIC14.33□□□□□ -0.12
CCDC58Q4VC31 TMEM30A-201ENST00000230461 4594 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.12
CCDC58Q4VC31 BHMT2-205ENST00000521567 1537 ntTSL 2 BASIC14.33□□□□□ -0.12
CCDC58Q4VC31 CD99-205ENST00000381192 1245 ntAPPRIS P3 TSL 1 (best) BASIC14.33□□□□□ -0.12
CCDC58Q4VC31 CXCL12-204ENST00000395793 665 ntTSL 5 BASIC14.33□□□□□ -0.12
CCDC58Q4VC31 AMPD3-203ENST00000396554 3806 ntTSL 1 (best) BASIC14.33□□□□□ -0.12
CCDC58Q4VC31 RAB17-203ENST00000409576 466 ntTSL 3 BASIC14.33□□□□□ -0.12
CCDC58Q4VC31 PMS2P4-201ENST00000412466 1052 ntBASIC14.33□□□□□ -0.12
CCDC58Q4VC31 KRT18P27-201ENST00000427733 1299 ntBASIC14.33□□□□□ -0.12
CCDC58Q4VC31 MTUS2-205ENST00000542829 1165 ntTSL 1 (best) BASIC14.33□□□□□ -0.12
CCDC58Q4VC31 FAM181A-205ENST00000557719 1072 ntAPPRIS P1 TSL 2 BASIC14.33□□□□□ -0.12
CCDC58Q4VC31 AKTIP-212ENST00000570004 1162 ntAPPRIS P3 TSL 1 (best) BASIC14.33□□□□□ -0.12
CCDC58Q4VC31 AC004597.1-201ENST00000595525 561 ntTSL 4 BASIC14.33□□□□□ -0.12
CCDC58Q4VC31 LTBP3-221ENST00000532932 3327 ntTSL 2 BASIC14.33□□□□□ -0.12
CCDC58Q4VC31 SH3YL1-206ENST00000405430 2064 ntAPPRIS P1 TSL 5 BASIC14.33□□□□□ -0.12
CCDC58Q4VC31 GNRHR2-201ENST00000312753 1599 ntTSL 1 (best) BASIC14.33□□□□□ -0.12
CCDC58Q4VC31 DEPDC5-203ENST00000400242 2395 ntTSL 1 (best) BASIC14.33□□□□□ -0.12
CCDC58Q4VC31 LETMD1-201ENST00000262055 2112 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.12
CCDC58Q4VC31 SLC38A9-202ENST00000396865 2927 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.12
CCDC58Q4VC31 CEP63-212ENST00000513612 2903 ntAPPRIS P3 TSL 2 BASIC14.33□□□□□ -0.12
CCDC58Q4VC31 KCND3-201ENST00000302127 2659 ntAPPRIS ALT1 TSL 5 BASIC14.33□□□□□ -0.12
CCDC58Q4VC31 SPOCK3-201ENST00000357154 2986 ntAPPRIS ALT2 TSL 5 BASIC14.33□□□□□ -0.12
CCDC58Q4VC31 NKIRAS1-202ENST00000412028 1605 ntAPPRIS ALT1 TSL 5 BASIC14.33□□□□□ -0.12
CCDC58Q4VC31 PIK3IP1-201ENST00000215912 2467 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.12
CCDC58Q4VC31 SYT15-201ENST00000374321 1369 ntAPPRIS P4 TSL 2 BASIC14.33□□□□□ -0.12
CCDC58Q4VC31 UBA1-202ENST00000377269 2497 ntTSL 2 BASIC14.33□□□□□ -0.12
CCDC58Q4VC31 CFAP65-203ENST00000409865 2769 ntAPPRIS ALT2 TSL 2 BASIC14.33□□□□□ -0.12
CCDC58Q4VC31 MYO3A-206ENST00000543632 2203 ntTSL 1 (best) BASIC14.33□□□□□ -0.12
CCDC58Q4VC31 ASAH1-249ENST00000637528 2215 ntTSL 5 BASIC14.33□□□□□ -0.12
CCDC58Q4VC31 AC118758.2-201ENST00000614242 2813 ntBASIC14.33□□□□□ -0.12
CCDC58Q4VC31 PAX3-206ENST00000392070 2258 ntAPPRIS P4 TSL 1 (best) BASIC14.32□□□□□ -0.12
CCDC58Q4VC31 TMEM220-202ENST00000455996 1402 ntAPPRIS ALT2 TSL 1 (best) BASIC14.32□□□□□ -0.12
CCDC58Q4VC31 ING1-203ENST00000375774 2870 ntTSL 1 (best) BASIC14.32□□□□□ -0.12
CCDC58Q4VC31 STC1-202ENST00000524323 1748 ntTSL 1 (best) BASIC14.32□□□□□ -0.12
CCDC58Q4VC31 DEPDC7-202ENST00000311388 2012 ntTSL 1 (best) BASIC14.32□□□□□ -0.12
CCDC58Q4VC31 PTPN9-206ENST00000618819 7813 ntAPPRIS P2 TSL 1 (best) BASIC14.32□□□□□ -0.12
CCDC58Q4VC31 DIS3-202ENST00000377780 5232 ntTSL 1 (best) BASIC14.32□□□□□ -0.12
CCDC58Q4VC31 CDH7-203ENST00000536984 3766 ntTSL 1 (best) BASIC14.32□□□□□ -0.12
CCDC58Q4VC31 GPAT3-201ENST00000264409 2625 ntAPPRIS P1 TSL 1 (best) BASIC14.32□□□□□ -0.12
CCDC58Q4VC31 RTEL1-205ENST00000370018 4955 ntTSL 1 (best) BASIC14.32□□□□□ -0.12
CCDC58Q4VC31 VIPR2-202ENST00000377633 1491 ntTSL 2 BASIC14.32□□□□□ -0.12
CCDC58Q4VC31 REXO1L2P-201ENST00000425429 2069 ntBASIC14.32□□□□□ -0.12
CCDC58Q4VC31 AP000439.3-201ENST00000545202 2376 ntTSL 2 BASIC14.32□□□□□ -0.12
CCDC58Q4VC31 PARD6G-201ENST00000353265 3868 ntAPPRIS P1 TSL 1 (best) BASIC14.32□□□□□ -0.12
CCDC58Q4VC31 ABCC1-201ENST00000399408 6594 ntTSL 5 BASIC14.32□□□□□ -0.12
CCDC58Q4VC31 ABCC1-202ENST00000399410 6552 ntAPPRIS P1 TSL 1 (best) BASIC14.32□□□□□ -0.12
CCDC58Q4VC31 PCNX1-202ENST00000439984 6988 ntTSL 1 (best) BASIC14.32□□□□□ -0.12
CCDC58Q4VC31 PRDM15-201ENST00000269844 4881 ntAPPRIS P3 TSL 1 (best) BASIC14.32□□□□□ -0.12
CCDC58Q4VC31 TNFSF8-203ENST00000618336 1523 ntTSL 3 BASIC14.32□□□□□ -0.12
CCDC58Q4VC31 SRRD-201ENST00000215917 4020 ntAPPRIS P1 TSL 1 (best) BASIC14.32□□□□□ -0.12
CCDC58Q4VC31 TPM1-203ENST00000317516 738 ntTSL 1 (best) BASIC14.32□□□□□ -0.12
CCDC58Q4VC31 MRPL43-208ENST00000370242 884 ntTSL 2 BASIC14.32□□□□□ -0.12
CCDC58Q4VC31 AC136632.2-201ENST00000512891 861 ntBASIC14.32□□□□□ -0.12
CCDC58Q4VC31 BATF2-204ENST00000527716 1230 ntTSL 2 BASIC14.32□□□□□ -0.12
CCDC58Q4VC31 TAGLN-206ENST00000530649 1227 ntAPPRIS P1 TSL 1 (best) BASIC14.32□□□□□ -0.12
CCDC58Q4VC31 RIN3-211ENST00000557762 517 ntTSL 3 BASIC14.32□□□□□ -0.12
CCDC58Q4VC31 TPM1-218ENST00000559281 851 ntTSL 5 BASIC14.32□□□□□ -0.12
CCDC58Q4VC31 ETFA-208ENST00000559602 792 ntTSL 3 BASIC14.32□□□□□ -0.12
CCDC58Q4VC31 RPL28-210ENST00000560583 1204 ntTSL 2 BASIC14.32□□□□□ -0.12
CCDC58Q4VC31 MIR4515-201ENST00000584082 81 ntBASIC14.32□□□□□ -0.12
CCDC58Q4VC31 AC008878.2-201ENST00000601870 942 ntAPPRIS P1 TSL 4 BASIC14.32□□□□□ -0.12
CCDC58Q4VC31 AL365330.1-201ENST00000607459 531 ntBASIC14.32□□□□□ -0.12
CCDC58Q4VC31 AL121772.3-201ENST00000610840 674 ntBASIC14.32□□□□□ -0.12
CCDC58Q4VC31 KLC4-204ENST00000453940 1945 ntTSL 2 BASIC14.32□□□□□ -0.12
CCDC58Q4VC31 CDC42-203ENST00000400259 2274 ntAPPRIS ALT1 TSL 5 BASIC14.32□□□□□ -0.12
CCDC58Q4VC31 ATRN-202ENST00000446916 3921 ntAPPRIS ALT2 TSL 1 (best) BASIC14.32□□□□□ -0.12
CCDC58Q4VC31 PRSS50-201ENST00000460241 2960 ntAPPRIS P1 TSL 2 BASIC14.32□□□□□ -0.12
CCDC58Q4VC31 ISG20L2-202ENST00000368219 2310 ntAPPRIS P1 TSL 5 BASIC14.32□□□□□ -0.12
CCDC58Q4VC31 PITPNM3-201ENST00000262483 7086 ntAPPRIS P3 TSL 1 (best) BASIC14.32□□□□□ -0.12
CCDC58Q4VC31 TFAP2A-201ENST00000319516 2035 ntTSL 5 BASIC14.32□□□□□ -0.12
CCDC58Q4VC31 TUB-AS1-201ENST00000506601 2021 ntTSL 2 BASIC14.32□□□□□ -0.12
CCDC58Q4VC31 TRAF7-201ENST00000326181 3700 ntAPPRIS P1 TSL 1 (best) BASIC14.32□□□□□ -0.12
CCDC58Q4VC31 PDPR-202ENST00000398122 2734 ntTSL 2 BASIC14.32□□□□□ -0.12
CCDC58Q4VC31 COL6A2-202ENST00000310645 3446 ntTSL 5 BASIC14.32□□□□□ -0.12
CCDC58Q4VC31 TRIM46-202ENST00000368382 3127 ntTSL 2 BASIC14.32□□□□□ -0.12
CCDC58Q4VC31 TUBGCP2-203ENST00000368563 4218 ntAPPRIS P1 TSL 1 (best) BASIC14.32□□□□□ -0.12
CCDC58Q4VC31 SEPT9-228ENST00000590294 2816 ntAPPRIS ALT2 TSL 5 BASIC14.32□□□□□ -0.12
CCDC58Q4VC31 FAM84A-201ENST00000295092 6355 ntAPPRIS P1 TSL 1 (best) BASIC14.32□□□□□ -0.12
CCDC58Q4VC31 C9orf78-201ENST00000372447 1795 ntAPPRIS P1 TSL 1 (best) BASIC14.32□□□□□ -0.12
CCDC58Q4VC31 EIF4G1-203ENST00000350481 4990 ntTSL 1 (best) BASIC14.32□□□□□ -0.12
CCDC58Q4VC31 MARK4-201ENST00000262891 3573 ntAPPRIS P1 TSL 1 (best) BASIC14.32□□□□□ -0.12
CCDC58Q4VC31 PKD1L2-209ENST00000531391 1488 ntTSL 1 (best) BASIC14.31□□□□□ -0.12
CCDC58Q4VC31 TMPRSS9-201ENST00000332578 3331 ntAPPRIS P1 TSL 1 (best) BASIC14.31□□□□□ -0.12
CCDC58Q4VC31 GOLGA5-201ENST00000163416 2969 ntAPPRIS P1 TSL 1 (best) BASIC14.31□□□□□ -0.12
CCDC58Q4VC31 SACM1L-201ENST00000389061 3723 ntAPPRIS P1 TSL 1 (best) BASIC14.31□□□□□ -0.12
CCDC58Q4VC31 C12orf49-201ENST00000261318 8404 ntAPPRIS P1 TSL 1 (best) BASIC14.31□□□□□ -0.12
CCDC58Q4VC31 C2orf54-202ENST00000388934 1911 ntAPPRIS P4 TSL 2 BASIC14.31□□□□□ -0.12
CCDC58Q4VC31 MKRN3-201ENST00000314520 2337 ntAPPRIS P1 BASIC14.31□□□□□ -0.12
CCDC58Q4VC31 DOK5-201ENST00000262593 1963 ntAPPRIS P1 TSL 1 (best) BASIC14.31□□□□□ -0.12
CCDC58Q4VC31 C1QTNF1-204ENST00000392445 2833 ntAPPRIS P1 TSL 2 BASIC14.31□□□□□ -0.12
CCDC58Q4VC31 RNPS1-220ENST00000566458 2037 ntTSL 1 (best) BASIC14.31□□□□□ -0.12
CCDC58Q4VC31 HAND2-AS1-202ENST00000502896 5278 ntTSL 1 (best) BASIC14.31□□□□□ -0.12
CCDC58Q4VC31 GPR61-206ENST00000616874 2459 ntAPPRIS P1 TSL 2 BASIC14.31□□□□□ -0.12
CCDC58Q4VC31 C7orf57-203ENST00000430738 2056 ntTSL 5 BASIC14.31□□□□□ -0.12
CCDC58Q4VC31 CHIC2-201ENST00000263921 1194 ntAPPRIS P1 TSL 1 (best) BASIC14.31□□□□□ -0.12
CCDC58Q4VC31 RNU1-129P-201ENST00000384064 167 ntBASIC14.31□□□□□ -0.12
CCDC58Q4VC31 AC073621.1-201ENST00000392730 636 ntBASIC14.31□□□□□ -0.12
CCDC58Q4VC31 SPATA7-203ENST00000393545 2123 ntAPPRIS P3 TSL 1 (best) BASIC14.31□□□□□ -0.12
Retrieved 100 of 98,524 protein–RNA pairs in 41.3 ms