Protein–RNA interactions for Protein: P16333

NCK1, Cytoplasmic protein NCK1, humanhuman

Predictions only

Length 377 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NCK1P16333 AC011476.2-201ENST00000585492 1271 ntTSL 2 BASIC15.11■□□□□ 0.01
NCK1P16333 LINC01128-210ENST00000609139 455 ntTSL 3 BASIC15.11■□□□□ 0.01
NCK1P16333 AL117335.1-203ENST00000619200 948 ntTSL 5 BASIC15.11■□□□□ 0.01
NCK1P16333 CDC42EP4-209ENST00000630622 240 ntTSL 5 BASIC15.11■□□□□ 0.01
NCK1P16333 CLDN14-201ENST00000342108 1453 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
NCK1P16333 TNRC18-202ENST00000399434 1459 ntTSL 2 BASIC15.11■□□□□ 0.01
NCK1P16333 TEX264-215ENST00000611400 1488 ntAPPRIS P3 TSL 5 BASIC15.11■□□□□ 0.01
NCK1P16333 SHISA5-210ENST00000444115 2081 ntTSL 2 BASIC15.11■□□□□ 0.01
NCK1P16333 CECR7-202ENST00000441006 2726 ntTSL 1 (best) BASIC15.11■□□□□ 0.01
NCK1P16333 DDX56-201ENST00000258772 2336 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
NCK1P16333 AL359258.3-201ENST00000622910 2331 ntBASIC15.11■□□□□ 0.01
NCK1P16333 SNED1-202ENST00000342631 1930 ntTSL 1 (best) BASIC15.11■□□□□ 0.01
NCK1P16333 RBFOX3-212ENST00000584778 1547 ntAPPRIS ALT2 TSL 5 BASIC15.11■□□□□ 0.01
NCK1P16333 BEX4-202ENST00000372695 1328 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
NCK1P16333 FAM192A-201ENST00000309137 2848 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
NCK1P16333 CHCHD3-201ENST00000262570 1598 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
NCK1P16333 KIAA0391-202ENST00000321130 1589 ntTSL 3 BASIC15.11■□□□□ 0.01
NCK1P16333 ALDH3B2-201ENST00000349015 2649 ntAPPRIS P1 TSL 5 BASIC15.11■□□□□ 0.01
NCK1P16333 ARHGAP23-221ENST00000620417 3663 ntAPPRIS ALT2 TSL 5 BASIC15.11■□□□□ 0.01
NCK1P16333 CCAR2-201ENST00000308511 4853 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
NCK1P16333 AC098591.1-201ENST00000381811 1613 ntTSL 2 BASIC15.1■□□□□ 0.01
NCK1P16333 MCM3AP-AS1-203ENST00000421927 2280 ntTSL 2 BASIC15.1■□□□□ 0.01
NCK1P16333 TEAD2-203ENST00000539846 1444 ntTSL 2 BASIC15.1■□□□□ 0.01
NCK1P16333 AL035460.1-201ENST00000380593 1866 ntAPPRIS P1 TSL 2 BASIC15.1■□□□□ 0.01
NCK1P16333 KNSTRN-202ENST00000416151 1899 ntTSL 3 BASIC15.1■□□□□ 0.01
NCK1P16333 USP28-214ENST00000545540 3431 ntTSL 2 BASIC15.1■□□□□ 0.01
NCK1P16333 DBH-AS1-201ENST00000425189 2139 ntTSL 1 (best) BASIC15.1■□□□□ 0.01
NCK1P16333 PARD3B-204ENST00000406610 8174 ntAPPRIS ALT2 TSL 1 (best) BASIC15.1■□□□□ 0.01
NCK1P16333 NBEA-203ENST00000379939 10738 ntAPPRIS ALT1 TSL 5 BASIC15.1■□□□□ 0.01
NCK1P16333 TCP11L1-201ENST00000334274 2817 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
NCK1P16333 CCNL1-202ENST00000295926 2388 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
NCK1P16333 FLJ42969-201ENST00000514926 1948 ntTSL 2 BASIC15.1■□□□□ 0.01
NCK1P16333 EIF2B3-210ENST00000620860 1923 ntTSL 1 (best) BASIC15.1■□□□□ 0.01
NCK1P16333 BABAM1-201ENST00000359435 1472 ntAPPRIS P3 TSL 1 (best) BASIC15.1■□□□□ 0.01
NCK1P16333 NPM2-209ENST00000521157 1484 ntAPPRIS P2 TSL 5 BASIC15.1■□□□□ 0.01
NCK1P16333 AP001282.1-201ENST00000531301 1499 ntBASIC15.1■□□□□ 0.01
NCK1P16333 ALDH1B1-201ENST00000377698 3066 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
NCK1P16333 MLPH-204ENST00000410032 2171 ntAPPRIS ALT2 TSL 2 BASIC15.1■□□□□ 0.01
NCK1P16333 SNX14-202ENST00000346348 3348 ntAPPRIS ALT2 TSL 1 (best) BASIC15.1■□□□□ 0.01
NCK1P16333 KNSTRN-201ENST00000249776 1714 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
NCK1P16333 NID1-201ENST00000264187 5864 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
NCK1P16333 CYP4F2-202ENST00000221700 2407 ntAPPRIS P2 TSL 1 (best) BASIC15.1■□□□□ 0.01
NCK1P16333 MAU2-201ENST00000262815 4994 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
NCK1P16333 MED30-201ENST00000297347 985 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
NCK1P16333 SMIM29-201ENST00000335352 1160 ntTSL 2 BASIC15.1■□□□□ 0.01
NCK1P16333 PBXIP1-201ENST00000368460 1175 ntAPPRIS ALT2 TSL 3 BASIC15.1■□□□□ 0.01
NCK1P16333 HUS1B-201ENST00000380907 1025 ntAPPRIS P1 BASIC15.1■□□□□ 0.01
NCK1P16333 CENPM-204ENST00000402420 688 ntTSL 5 BASIC15.1■□□□□ 0.01
NCK1P16333 EEF1E1-202ENST00000429723 562 ntTSL 3 BASIC15.1■□□□□ 0.01
NCK1P16333 AC080013.1-201ENST00000495318 566 ntTSL 4 BASIC15.1■□□□□ 0.01
NCK1P16333 AL031432.2-201ENST00000566714 459 ntBASIC15.1■□□□□ 0.01
NCK1P16333 AL928711.1-201ENST00000570165 459 ntBASIC15.1■□□□□ 0.01
NCK1P16333 AC092115.3-201ENST00000575838 592 ntTSL 5 BASIC15.1■□□□□ 0.01
NCK1P16333 AC132938.3-201ENST00000579095 357 ntTSL 2 BASIC15.1■□□□□ 0.01
NCK1P16333 AC129926.1-201ENST00000581944 614 ntTSL 2 BASIC15.1■□□□□ 0.01
NCK1P16333 OAZ1-202ENST00000582888 969 ntAPPRIS ALT1 TSL 5 BASIC15.1■□□□□ 0.01
NCK1P16333 PATZ1-203ENST00000351933 3638 ntTSL 1 (best) BASIC15.1■□□□□ 0.01
NCK1P16333 MED16-203ENST00000325464 2922 ntAPPRIS P2 TSL 5 BASIC15.1■□□□□ 0.01
NCK1P16333 KRAS-202ENST00000311936 5765 ntAPPRIS ALT1 TSL 1 (best) BASIC15.1■□□□□ 0.01
NCK1P16333 ADRA1A-202ENST00000354550 1765 ntTSL 1 (best) BASIC15.1■□□□□ 0.01
NCK1P16333 GPAT4-201ENST00000396987 6298 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
NCK1P16333 KATNBL1-201ENST00000256544 2723 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
NCK1P16333 SPATA20-201ENST00000006658 2719 ntTSL 1 (best) BASIC15.1■□□□□ 0.01
NCK1P16333 MBD1-203ENST00000339998 2956 ntAPPRIS ALT2 TSL 1 (best) BASIC15.1■□□□□ 0.01
NCK1P16333 TGM6-201ENST00000202625 2292 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
NCK1P16333 APLP1-202ENST00000537454 2266 ntTSL 2 BASIC15.1■□□□□ 0.01
NCK1P16333 SFN-201ENST00000339276 1320 ntAPPRIS P1 BASIC15.1■□□□□ 0.01
NCK1P16333 TMEM201-202ENST00000340381 3776 ntAPPRIS P1 TSL 5 BASIC15.1■□□□□ 0.01
NCK1P16333 SOGA3-201ENST00000465909 3756 ntTSL 5 BASIC15.1■□□□□ 0.01
NCK1P16333 CAPN7-201ENST00000253693 4353 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
NCK1P16333 TIMP3-201ENST00000266085 4603 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
NCK1P16333 RAB3IL1-201ENST00000301773 2125 ntTSL 1 (best) BASIC15.1■□□□□ 0.01
NCK1P16333 IRF2BP2-202ENST00000366610 4615 ntAPPRIS ALT2 TSL 1 (best) BASIC15.1■□□□□ 0.01
NCK1P16333 MOCS1-205ENST00000373195 2852 ntTSL 2 BASIC15.1■□□□□ 0.01
NCK1P16333 AKT1S1-205ENST00000391833 3640 ntAPPRIS P1 TSL 2 BASIC15.1■□□□□ 0.01
NCK1P16333 CUL3-201ENST00000264414 6741 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
NCK1P16333 ALG1-204ENST00000588623 2671 ntTSL 1 (best) BASIC15.1■□□□□ 0.01
NCK1P16333 STIP1-201ENST00000305218 2196 ntAPPRIS P1 TSL 1 (best) BASIC15.09■□□□□ 0.01
NCK1P16333 GORAB-202ENST00000367763 2189 ntAPPRIS P1 TSL 2 BASIC15.09■□□□□ 0.01
NCK1P16333 PRKRIP1-201ENST00000397912 2159 ntAPPRIS P1 TSL 1 (best) BASIC15.09■□□□□ 0.01
NCK1P16333 TBRG4-215ENST00000494076 2190 ntAPPRIS P1 TSL 2 BASIC15.09■□□□□ 0.01
NCK1P16333 ZNF800-201ENST00000265827 4203 ntAPPRIS P1 TSL 1 (best) BASIC15.09■□□□□ 0.01
NCK1P16333 PSMA8-202ENST00000343848 1675 ntTSL 1 (best) BASIC15.09■□□□□ 0.01
NCK1P16333 DCAF17-202ENST00000375255 5828 ntAPPRIS P3 TSL 1 (best) BASIC15.09■□□□□ 0.01
NCK1P16333 DSE-202ENST00000359564 4037 ntAPPRIS P1 TSL 1 (best) BASIC15.09■□□□□ 0.01
NCK1P16333 HGNC:24955-201ENST00000303177 2452 ntAPPRIS P1 TSL 1 (best) BASIC15.09■□□□□ 0.01
NCK1P16333 AC005089.1-201ENST00000619486 2241 ntBASIC15.09■□□□□ 0.01
NCK1P16333 KDM3A-201ENST00000312912 4886 ntAPPRIS P1 TSL 1 (best) BASIC15.09■□□□□ 0.01
NCK1P16333 HSPH1-201ENST00000320027 5191 ntAPPRIS P1 TSL 1 (best) BASIC15.09■□□□□ 0.01
NCK1P16333 MAGEA2B-202ENST00000370293 1714 ntAPPRIS P1 TSL 2 BASIC15.09■□□□□ 0.01
NCK1P16333 SKOR1-201ENST00000341418 3332 ntAPPRIS P2 TSL 1 (best) BASIC15.09■□□□□ 0.01
NCK1P16333 FAM198B-203ENST00000585682 4900 ntAPPRIS P1 TSL 1 (best) BASIC15.09■□□□□ 0.01
NCK1P16333 NACC1-201ENST00000292431 4445 ntAPPRIS P1 TSL 1 (best) BASIC15.09■□□□□ 0.01
NCK1P16333 AZGP1-202ENST00000411734 2027 ntTSL 1 (best) BASIC15.09■□□□□ 0.01
NCK1P16333 SGK3-211ENST00000522398 3106 ntAPPRIS P1 TSL 5 BASIC15.09■□□□□ 0.01
NCK1P16333 RNPS1-223ENST00000568631 1792 ntAPPRIS P1 TSL 5 BASIC15.09■□□□□ 0.01
NCK1P16333 NFATC4-213ENST00000554591 2893 ntAPPRIS ALT2 TSL 1 (best) BASIC15.09■□□□□ 0.01
NCK1P16333 APAF1-201ENST00000333991 4539 ntTSL 5 BASIC15.09■□□□□ 0.01
NCK1P16333 ALG12-201ENST00000330817 5350 ntAPPRIS P1 TSL 1 (best) BASIC15.09■□□□□ 0.01
NCK1P16333 SMIM5-201ENST00000375215 1546 ntAPPRIS P1 TSL 1 (best) BASIC15.09■□□□□ 0.01
Retrieved 100 of 98,524 protein–RNA pairs in 35.8 ms