Protein–RNA interactions for Protein: P02461

COL3A1, Collagen alpha-1(III) chain, humanhuman

Predicted RBP Predictions only

Length 1,466 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL3A1P02461 C9orf50-202ENST00000619117 796 ntAPPRIS ALT2 TSL 1 (best) BASIC20.67■□□□□ 0.9
COL3A1P02461 TOM1-209ENST00000447733 2317 ntTSL 2 BASIC20.67■□□□□ 0.9
COL3A1P02461 FAN1-207ENST00000565466 2304 ntTSL 2 BASIC20.67■□□□□ 0.9
COL3A1P02461 SFT2D3-201ENST00000310981 3735 ntAPPRIS P1 BASIC20.67■□□□□ 0.9
COL3A1P02461 CNN1-210ENST00000592923 1848 ntTSL 2 BASIC20.67■□□□□ 0.9
COL3A1P02461 COQ8B-202ENST00000324464 2443 ntAPPRIS P3 TSL 1 (best) BASIC20.67■□□□□ 0.9
COL3A1P02461 PIAS3-201ENST00000369298 2761 ntTSL 5 BASIC20.66■□□□□ 0.9
COL3A1P02461 SLC18A1-207ENST00000519026 1980 ntTSL 5 BASIC20.66■□□□□ 0.9
COL3A1P02461 FAM83G-201ENST00000345041 2929 ntAPPRIS P1 TSL 5 BASIC20.66■□□□□ 0.9
COL3A1P02461 NDRG2-202ENST00000298687 2122 ntAPPRIS P4 TSL 1 (best) BASIC20.66■□□□□ 0.9
COL3A1P02461 NDRG2-203ENST00000350792 2127 ntAPPRIS ALT1 TSL 1 (best) BASIC20.66■□□□□ 0.9
COL3A1P02461 BRAP-201ENST00000327551 1947 ntTSL 1 (best) BASIC20.66■□□□□ 0.9
COL3A1P02461 HAUS2-208ENST00000568876 1702 ntTSL 4 BASIC20.66■□□□□ 0.9
COL3A1P02461 AATK-203ENST00000417379 5081 ntAPPRIS ALT2 TSL 1 (best) BASIC20.66■□□□□ 0.9
COL3A1P02461 SYP-207ENST00000479808 1850 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
COL3A1P02461 SIN3B-206ENST00000595541 2767 ntTSL 2 BASIC20.66■□□□□ 0.9
COL3A1P02461 DKC1-201ENST00000369550 2577 ntAPPRIS P3 TSL 1 (best) BASIC20.66■□□□□ 0.9
COL3A1P02461 AMT-202ENST00000395338 1831 ntAPPRIS ALT1 TSL 1 (best) BASIC20.66■□□□□ 0.9
COL3A1P02461 KRTAP1-4-201ENST00000377747 408 ntAPPRIS P1 BASIC20.66■□□□□ 0.9
COL3A1P02461 SNHG11-209ENST00000440918 556 ntTSL 3 BASIC20.66■□□□□ 0.9
COL3A1P02461 GGTLC2-202ENST00000448514 678 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
COL3A1P02461 LCN10-203ENST00000474369 564 ntAPPRIS ALT2 TSL 1 (best) BASIC20.66■□□□□ 0.9
COL3A1P02461 MRNIP-220ENST00000523084 1096 ntTSL 1 (best) BASIC20.66■□□□□ 0.9
COL3A1P02461 ENPP7P5-201ENST00000541031 1031 ntBASIC20.66■□□□□ 0.9
COL3A1P02461 RPL3L-201ENST00000268661 2182 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
COL3A1P02461 MRPL11-201ENST00000310999 1605 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
COL3A1P02461 TP73-213ENST00000604479 1623 ntTSL 5 BASIC20.66■□□□□ 0.9
COL3A1P02461 EFNB3-201ENST00000226091 3222 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
COL3A1P02461 TNRC18P3-201ENST00000441896 2691 ntBASIC20.66■□□□□ 0.9
COL3A1P02461 AP000347.2-202ENST00000421064 3041 ntTSL 1 (best) BASIC20.66■□□□□ 0.9
COL3A1P02461 CBFB-201ENST00000290858 3136 ntAPPRIS P3 TSL 1 (best) BASIC20.66■□□□□ 0.9
COL3A1P02461 SELENOV-201ENST00000335426 1704 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
COL3A1P02461 SELENOV-205ENST00000622070 1704 ntTSL 5 BASIC20.66■□□□□ 0.9
COL3A1P02461 DEPDC5-203ENST00000400242 2395 ntTSL 1 (best) BASIC20.65■□□□□ 0.9
COL3A1P02461 CNPY4-201ENST00000262932 1502 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
COL3A1P02461 ING1-203ENST00000375774 2870 ntTSL 1 (best) BASIC20.65■□□□□ 0.9
COL3A1P02461 MYB-203ENST00000341911 3672 ntAPPRIS ALT1 TSL 1 (best) BASIC20.65■□□□□ 0.9
COL3A1P02461 CDC42-203ENST00000400259 2274 ntAPPRIS ALT1 TSL 5 BASIC20.65■□□□□ 0.9
COL3A1P02461 PIK3R6-203ENST00000614407 2265 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
COL3A1P02461 KCND3-202ENST00000315987 2716 ntAPPRIS P4 TSL 1 (best) BASIC20.65■□□□□ 0.9
COL3A1P02461 APOA1-201ENST00000236850 1227 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
COL3A1P02461 CKLF-203ENST00000351137 508 ntAPPRIS ALT2 TSL 1 (best) BASIC20.65■□□□□ 0.9
COL3A1P02461 APOA1-205ENST00000375329 927 ntTSL 2 BASIC20.65■□□□□ 0.9
COL3A1P02461 AC005229.1-201ENST00000392885 409 ntBASIC20.65■□□□□ 0.9
COL3A1P02461 NDUFC1-203ENST00000394228 761 ntAPPRIS P1 TSL 2 BASIC20.65■□□□□ 0.9
COL3A1P02461 MIR1909-201ENST00000411312 80 ntBASIC20.65■□□□□ 0.9
COL3A1P02461 AL691459.1-201ENST00000438589 407 ntTSL 3 BASIC20.65■□□□□ 0.9
COL3A1P02461 GPR53P-205ENST00000457298 1084 ntBASIC20.65■□□□□ 0.9
COL3A1P02461 AC012640.1-201ENST00000509915 688 ntTSL 3 BASIC20.65■□□□□ 0.9
COL3A1P02461 ATG10-207ENST00000513443 978 ntTSL 1 (best) BASIC20.65■□□□□ 0.9
COL3A1P02461 AC113383.1-201ENST00000514696 582 ntTSL 4 BASIC20.65■□□□□ 0.9
COL3A1P02461 ACRV1-202ENST00000527795 782 ntAPPRIS ALT2 TSL 2 BASIC20.65■□□□□ 0.9
COL3A1P02461 TDH-203ENST00000531764 1110 ntBASIC20.65■□□□□ 0.9
COL3A1P02461 C17orf49-209ENST00000552775 779 ntTSL 5 BASIC20.65■□□□□ 0.9
COL3A1P02461 FAM210B-201ENST00000371384 3046 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
COL3A1P02461 CREB3L2-204ENST00000456390 2360 ntTSL 2 BASIC20.65■□□□□ 0.9
COL3A1P02461 NSUN5P1-204ENST00000428392 1562 ntTSL 2 BASIC20.65■□□□□ 0.9
COL3A1P02461 IFT140-201ENST00000361339 2987 ntTSL 1 (best) BASIC20.65■□□□□ 0.9
COL3A1P02461 NKIRAS1-201ENST00000388759 2335 ntAPPRIS P2 TSL 3 BASIC20.65■□□□□ 0.9
COL3A1P02461 RXRA-202ENST00000481739 1846 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
COL3A1P02461 TMA16-201ENST00000358572 1978 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
COL3A1P02461 GUCY1B3-206ENST00000507146 2709 ntTSL 1 (best) BASIC20.65■□□□□ 0.9
COL3A1P02461 TSNARE1-201ENST00000307180 1907 ntAPPRIS ALT2 TSL 5 BASIC20.65■□□□□ 0.9
COL3A1P02461 NR1H3-235ENST00000616973 1919 ntTSL 1 (best) BASIC20.65■□□□□ 0.9
COL3A1P02461 AC131160.1-201ENST00000639401 3058 ntAPPRIS P1 TSL 5 BASIC20.64■□□□□ 0.9
COL3A1P02461 DENR-201ENST00000280557 2769 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.9
COL3A1P02461 CSF2-201ENST00000296871 787 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.89
COL3A1P02461 DSCR3-204ENST00000399001 821 ntTSL 2 BASIC20.64■□□□□ 0.89
COL3A1P02461 SELENOM-201ENST00000400299 694 ntAPPRIS P2 TSL 1 (best) BASIC20.64■□□□□ 0.89
COL3A1P02461 AC093433.1-201ENST00000458048 571 ntBASIC20.64■□□□□ 0.89
COL3A1P02461 GS1-24F4.2-201ENST00000500823 1110 ntTSL 1 (best) BASIC20.64■□□□□ 0.89
COL3A1P02461 IGHV3-71-201ENST00000523324 359 ntBASIC20.64■□□□□ 0.89
COL3A1P02461 NAALADL1-208ENST00000528884 973 ntTSL 1 (best) BASIC20.64■□□□□ 0.89
COL3A1P02461 KRT17P8-201ENST00000540749 863 ntBASIC20.64■□□□□ 0.89
COL3A1P02461 SDR39U1-212ENST00000555365 976 ntTSL 3 BASIC20.64■□□□□ 0.89
COL3A1P02461 AL118558.1-202ENST00000557242 451 ntTSL 3 BASIC20.64■□□□□ 0.89
COL3A1P02461 AP001063.1-201ENST00000568332 529 ntBASIC20.64■□□□□ 0.89
COL3A1P02461 AC112693.3-201ENST00000624819 1983 ntBASIC20.64■□□□□ 0.89
COL3A1P02461 TSSK2-201ENST00000399635 1816 ntAPPRIS P1 BASIC20.64■□□□□ 0.89
COL3A1P02461 NFATC4-218ENST00000554966 2506 ntAPPRIS ALT2 TSL 1 (best) BASIC20.64■□□□□ 0.89
COL3A1P02461 NFATC4-225ENST00000556169 2509 ntAPPRIS ALT2 TSL 1 (best) BASIC20.64■□□□□ 0.89
COL3A1P02461 BID-213ENST00000615414 2236 ntTSL 5 BASIC20.64■□□□□ 0.89
COL3A1P02461 GFAP-225ENST00000638281 2099 ntTSL 5 BASIC20.64■□□□□ 0.89
COL3A1P02461 GABARAP-201ENST00000302386 1634 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.89
COL3A1P02461 NME7-201ENST00000367811 1642 ntAPPRIS P3 TSL 1 (best) BASIC20.64■□□□□ 0.89
COL3A1P02461 ZSWIM8-AS1-201ENST00000456638 1460 ntTSL 1 (best) BASIC20.64■□□□□ 0.89
COL3A1P02461 TMEM139-205ENST00000410004 2114 ntAPPRIS P1 TSL 2 BASIC20.64■□□□□ 0.89
COL3A1P02461 RGR-201ENST00000358110 1349 ntTSL 1 (best) BASIC20.64■□□□□ 0.89
COL3A1P02461 HNRNPF-204ENST00000443950 2755 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.89
COL3A1P02461 CTSD-211ENST00000637387 1597 ntAPPRIS ALT2 TSL 5 BASIC20.64■□□□□ 0.89
COL3A1P02461 NSUN5P1-206ENST00000457988 1836 ntTSL 2 BASIC20.64■□□□□ 0.89
COL3A1P02461 SLC19A2-202ENST00000367804 2976 ntTSL 1 (best) BASIC20.63■□□□□ 0.89
COL3A1P02461 AL138799.1-201ENST00000448213 1675 ntBASIC20.63■□□□□ 0.89
COL3A1P02461 APOA1-204ENST00000375323 1088 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
COL3A1P02461 GHSR-202ENST00000427970 912 ntBASIC20.63■□□□□ 0.89
COL3A1P02461 RPL28-203ENST00000428193 573 ntTSL 2 BASIC20.63■□□□□ 0.89
COL3A1P02461 RPL28-204ENST00000431533 590 ntTSL 2 BASIC20.63■□□□□ 0.89
COL3A1P02461 TMEM14B-204ENST00000461342 559 ntTSL 2 BASIC20.63■□□□□ 0.89
COL3A1P02461 AP001582.1-201ENST00000525856 295 ntBASIC20.63■□□□□ 0.89
COL3A1P02461 AC008969.1-205ENST00000553254 876 ntTSL 2 BASIC20.63■□□□□ 0.89
Retrieved 100 of 98,524 protein–RNA pairs in 53.4 ms