Protein–RNA interactions for Protein: Q96LD4

TRIM47, Tripartite motif-containing protein 47, humanhuman

Predictions only

Length 638 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM47Q96LD4 AC092933.1-201ENST00000393644 945 ntBASIC18.63■□□□□ 0.57
TRIM47Q96LD4 STX1A-203ENST00000395155 783 ntTSL 2 BASIC18.63■□□□□ 0.57
TRIM47Q96LD4 HAUS4P1-201ENST00000406739 1145 ntBASIC18.63■□□□□ 0.57
TRIM47Q96LD4 THPO-202ENST00000421442 1132 ntTSL 1 (best) BASIC18.63■□□□□ 0.57
TRIM47Q96LD4 USHBP1-203ENST00000431146 2136 ntTSL 2 BASIC18.63■□□□□ 0.57
TRIM47Q96LD4 AP000345.1-201ENST00000454863 569 ntTSL 4 BASIC18.63■□□□□ 0.57
TRIM47Q96LD4 IP6K1-203ENST00000460540 1260 ntTSL 2 BASIC18.63■□□□□ 0.57
TRIM47Q96LD4 CD74-212ENST00000524315 584 ntTSL 5 BASIC18.63■□□□□ 0.57
TRIM47Q96LD4 AC000032.1-201ENST00000562538 491 ntTSL 2 BASIC18.63■□□□□ 0.57
TRIM47Q96LD4 AC133550.2-201ENST00000567731 544 ntTSL 4 BASIC18.63■□□□□ 0.57
TRIM47Q96LD4 C19orf70-206ENST00000590389 769 ntTSL 3 BASIC18.63■□□□□ 0.57
TRIM47Q96LD4 TECR-207ENST00000596073 1170 ntTSL 1 (best) BASIC18.63■□□□□ 0.57
TRIM47Q96LD4 TECR-220ENST00000600083 1204 ntTSL 2 BASIC18.63■□□□□ 0.57
TRIM47Q96LD4 IL32-235ENST00000613483 1033 ntAPPRIS ALT2 TSL 5 BASIC18.63■□□□□ 0.57
TRIM47Q96LD4 FAM49B-223ENST00000522746 2196 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
TRIM47Q96LD4 EIF3K-203ENST00000545173 1327 ntAPPRIS ALT1 TSL 2 BASIC18.63■□□□□ 0.57
TRIM47Q96LD4 F3-201ENST00000334047 2287 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
TRIM47Q96LD4 SPATS1-201ENST00000288390 1354 ntAPPRIS P2 TSL 1 (best) BASIC18.63■□□□□ 0.57
TRIM47Q96LD4 DNAJA4-206ENST00000446172 1399 ntTSL 1 (best) BASIC18.63■□□□□ 0.57
TRIM47Q96LD4 CTSB-219ENST00000530640 1389 ntAPPRIS P1 TSL 5 BASIC18.63■□□□□ 0.57
TRIM47Q96LD4 STC2-201ENST00000265087 5353 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
TRIM47Q96LD4 UNC5D-203ENST00000416672 3532 ntAPPRIS ALT2 TSL 5 BASIC18.63■□□□□ 0.57
TRIM47Q96LD4 NPC1L1-203ENST00000423141 2554 ntTSL 1 (best) BASIC18.63■□□□□ 0.57
TRIM47Q96LD4 SPG11-215ENST00000559193 2579 ntAPPRIS ALT2 TSL 1 (best) BASIC18.63■□□□□ 0.57
TRIM47Q96LD4 ARNTL2-208ENST00000544915 6785 ntAPPRIS ALT2 TSL 5 BASIC18.63■□□□□ 0.57
TRIM47Q96LD4 PAPLN-202ENST00000340738 5834 ntAPPRIS P2 TSL 5 BASIC18.63■□□□□ 0.57
TRIM47Q96LD4 PRKAR2B-201ENST00000265717 3745 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
TRIM47Q96LD4 DGKZ-202ENST00000343674 3816 ntAPPRIS P3 TSL 2 BASIC18.63■□□□□ 0.57
TRIM47Q96LD4 RAB29-201ENST00000235932 1723 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
TRIM47Q96LD4 FMNL3-202ENST00000352151 4006 ntAPPRIS P3 TSL 2 BASIC18.63■□□□□ 0.57
TRIM47Q96LD4 ZMYM3-203ENST00000373981 1841 ntTSL 1 (best) BASIC18.63■□□□□ 0.57
TRIM47Q96LD4 C2orf54-203ENST00000402775 1958 ntAPPRIS ALT2 TSL 2 BASIC18.62■□□□□ 0.57
TRIM47Q96LD4 LINC02370-201ENST00000428272 2009 ntTSL 5 BASIC18.62■□□□□ 0.57
TRIM47Q96LD4 ACOT12-201ENST00000307624 2086 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
TRIM47Q96LD4 ACSF3-204ENST00000406948 2247 ntAPPRIS P1 TSL 2 BASIC18.62■□□□□ 0.57
TRIM47Q96LD4 LETM2-205ENST00000519476 2240 ntTSL 1 (best) BASIC18.62■□□□□ 0.57
TRIM47Q96LD4 PGRMC2-207ENST00000520121 3785 ntTSL 1 (best) BASIC18.62■□□□□ 0.57
TRIM47Q96LD4 SEPT8-204ENST00000378699 2289 ntTSL 5 BASIC18.62■□□□□ 0.57
TRIM47Q96LD4 ADD1-205ENST00000398125 4079 ntTSL 5 BASIC18.62■□□□□ 0.57
TRIM47Q96LD4 PDK1-203ENST00000410055 2990 ntAPPRIS P3 TSL 1 (best) BASIC18.62■□□□□ 0.57
TRIM47Q96LD4 ZNF281-203ENST00000367353 3080 ntAPPRIS P3 TSL 1 (best) BASIC18.62■□□□□ 0.57
TRIM47Q96LD4 MXD1-201ENST00000264444 5587 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
TRIM47Q96LD4 KHNYN-202ENST00000553935 3359 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
TRIM47Q96LD4 MAP2K7-202ENST00000397981 3430 ntTSL 1 (best) BASIC18.62■□□□□ 0.57
TRIM47Q96LD4 NSL1-201ENST00000366976 722 ntTSL 2 BASIC18.62■□□□□ 0.57
TRIM47Q96LD4 GBGT1-202ENST00000372038 847 ntTSL 3 BASIC18.62■□□□□ 0.57
TRIM47Q96LD4 KRT43P-201ENST00000434019 910 ntBASIC18.62■□□□□ 0.57
TRIM47Q96LD4 AC093724.1-201ENST00000448659 1027 ntBASIC18.62■□□□□ 0.57
TRIM47Q96LD4 VCX3B-204ENST00000453306 868 ntAPPRIS ALT2 TSL 5 BASIC18.62■□□□□ 0.57
TRIM47Q96LD4 SSBP1-214ENST00000498107 636 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
TRIM47Q96LD4 AC109479.1-201ENST00000519603 624 ntTSL 2 BASIC18.62■□□□□ 0.57
TRIM47Q96LD4 HACD3-202ENST00000442729 1332 ntTSL 2 BASIC18.62■□□□□ 0.57
TRIM47Q96LD4 AC093525.8-201ENST00000624099 1342 ntBASIC18.62■□□□□ 0.57
TRIM47Q96LD4 CALM1-216ENST00000626705 1341 ntTSL 5 BASIC18.62■□□□□ 0.57
TRIM47Q96LD4 AC018665.1-201ENST00000622927 1362 ntBASIC18.62■□□□□ 0.57
TRIM47Q96LD4 HACD3-206ENST00000565299 1465 ntTSL 5 BASIC18.62■□□□□ 0.57
TRIM47Q96LD4 ARPC1B-211ENST00000451682 1715 ntAPPRIS P1 TSL 5 BASIC18.62■□□□□ 0.57
TRIM47Q96LD4 CLCF1-201ENST00000312438 1844 ntAPPRIS P3 TSL 1 (best) BASIC18.62■□□□□ 0.57
TRIM47Q96LD4 NAT9-210ENST00000580301 1860 ntTSL 1 (best) BASIC18.62■□□□□ 0.57
TRIM47Q96LD4 FUT5-201ENST00000252675 1916 ntAPPRIS P1 BASIC18.62■□□□□ 0.57
TRIM47Q96LD4 C11orf49-204ENST00000395460 1916 ntTSL 1 (best) BASIC18.62■□□□□ 0.57
TRIM47Q96LD4 PRKCSH-217ENST00000592741 2100 ntAPPRIS ALT2 TSL 1 (best) BASIC18.62■□□□□ 0.57
TRIM47Q96LD4 TRIP10-201ENST00000313244 2153 ntTSL 1 (best) BASIC18.62■□□□□ 0.57
TRIM47Q96LD4 P4HA2-201ENST00000166534 2230 ntAPPRIS P3 TSL 1 (best) BASIC18.62■□□□□ 0.57
TRIM47Q96LD4 ANTXRL-205ENST00000620264 2206 ntAPPRIS P2 TSL 5 BASIC18.62■□□□□ 0.57
TRIM47Q96LD4 GLOD4-203ENST00000536578 2497 ntTSL 5 BASIC18.62■□□□□ 0.57
TRIM47Q96LD4 JKAMP-202ENST00000356057 2524 ntTSL 1 (best) BASIC18.62■□□□□ 0.57
TRIM47Q96LD4 APOPT1-201ENST00000409074 2523 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
TRIM47Q96LD4 XRCC3-209ENST00000554913 2539 ntAPPRIS P1 TSL 2 BASIC18.62■□□□□ 0.57
TRIM47Q96LD4 CYP2T1P-202ENST00000641596 2535 ntBASIC18.62■□□□□ 0.57
TRIM47Q96LD4 PLK2-215ENST00000617412 2792 ntTSL 5 BASIC18.62■□□□□ 0.57
TRIM47Q96LD4 SURF4-208ENST00000613129 3148 ntTSL 2 BASIC18.62■□□□□ 0.57
TRIM47Q96LD4 AC006460.2-201ENST00000638173 4744 ntTSL 5 BASIC18.62■□□□□ 0.57
TRIM47Q96LD4 AHR-201ENST00000242057 6276 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
TRIM47Q96LD4 PDE8B-201ENST00000264917 5956 ntAPPRIS P3 TSL 1 (best) BASIC18.61■□□□□ 0.57
TRIM47Q96LD4 TBC1D9B-201ENST00000355235 5119 ntAPPRIS P3 TSL 5 BASIC18.61■□□□□ 0.57
TRIM47Q96LD4 ARHGAP39-202ENST00000377307 4673 ntAPPRIS P3 TSL 5 BASIC18.61■□□□□ 0.57
TRIM47Q96LD4 INPP4A-204ENST00000409540 3231 ntTSL 1 (best) BASIC18.61■□□□□ 0.57
TRIM47Q96LD4 ADAM8-205ENST00000485491 2441 ntTSL 2 BASIC18.61■□□□□ 0.57
TRIM47Q96LD4 TOM1L1-204ENST00000570371 2442 ntTSL 5 BASIC18.61■□□□□ 0.57
TRIM47Q96LD4 RGS11-202ENST00000316163 2376 ntTSL 1 (best) BASIC18.61■□□□□ 0.57
TRIM47Q96LD4 WDR20-211ENST00000556807 2382 ntTSL 1 (best) BASIC18.61■□□□□ 0.57
TRIM47Q96LD4 PLCB1-201ENST00000338037 7092 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
TRIM47Q96LD4 DCST1-201ENST00000295542 2279 ntAPPRIS P3 TSL 2 BASIC18.61■□□□□ 0.57
TRIM47Q96LD4 TMC3-AS1-203ENST00000559781 2195 ntTSL 3 BASIC18.61■□□□□ 0.57
TRIM47Q96LD4 VCAN-204ENST00000502527 2087 ntAPPRIS ALT1 TSL 1 (best) BASIC18.61■□□□□ 0.57
TRIM47Q96LD4 FBXO21-208ENST00000622495 6040 ntAPPRIS ALT1 TSL 1 (best) BASIC18.61■□□□□ 0.57
TRIM47Q96LD4 LINC01660-203ENST00000618517 1859 ntTSL 2 BASIC18.61■□□□□ 0.57
TRIM47Q96LD4 DUOXA2-201ENST00000323030 1760 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
TRIM47Q96LD4 SNX33P1-201ENST00000592116 1762 ntBASIC18.61■□□□□ 0.57
TRIM47Q96LD4 MED19-201ENST00000337672 1637 ntTSL 1 (best) BASIC18.61■□□□□ 0.57
TRIM47Q96LD4 CRTC2-202ENST00000368630 1635 ntTSL 2 BASIC18.61■□□□□ 0.57
TRIM47Q96LD4 AL589702.1-201ENST00000641229 1509 ntBASIC18.61■□□□□ 0.57
TRIM47Q96LD4 CUX1-213ENST00000549414 4452 ntAPPRIS ALT2 TSL 5 BASIC18.61■□□□□ 0.57
TRIM47Q96LD4 CLK3P2-201ENST00000427566 1453 ntBASIC18.61■□□□□ 0.57
TRIM47Q96LD4 ACTL9-201ENST00000324436 1426 ntAPPRIS P1 BASIC18.61■□□□□ 0.57
TRIM47Q96LD4 AL161781.2-201ENST00000509911 739 ntTSL 2 BASIC18.61■□□□□ 0.57
TRIM47Q96LD4 TROAP-207ENST00000548311 623 ntAPPRIS ALT2 TSL 2 BASIC18.61■□□□□ 0.57
TRIM47Q96LD4 AL133153.2-201ENST00000557524 303 ntTSL 3 BASIC18.61■□□□□ 0.57
TRIM47Q96LD4 AC010491.1-203ENST00000564167 638 ntTSL 2 BASIC18.61■□□□□ 0.57
Retrieved 100 of 98,524 protein–RNA pairs in 51.6 ms