Protein–RNA interactions for Protein: Q5VIR6

VPS53, Vacuolar protein sorting-associated protein 53 homolog, humanhuman

Predictions only

Length 699 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53Q5VIR6 TRIML1-201ENST00000332517 1797 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
VPS53Q5VIR6 EXD3-203ENST00000465160 1585 ntTSL 2 BASIC19.25■□□□□ 0.67
VPS53Q5VIR6 AL163636.2-201ENST00000553909 1498 ntAPPRIS P1 TSL 2 BASIC19.25■□□□□ 0.67
VPS53Q5VIR6 SNX1-213ENST00000561026 1374 ntTSL 1 (best) BASIC19.25■□□□□ 0.67
VPS53Q5VIR6 POLR3GL-202ENST00000369314 1165 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
VPS53Q5VIR6 LY6G6C-201ENST00000375819 992 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
VPS53Q5VIR6 ZC3H12D-202ENST00000409948 753 ntTSL 3 BASIC19.25■□□□□ 0.67
VPS53Q5VIR6 RPL37AP1-201ENST00000412502 279 ntBASIC19.25■□□□□ 0.67
VPS53Q5VIR6 CYMP-203ENST00000474680 1263 ntBASIC19.25■□□□□ 0.67
VPS53Q5VIR6 AC140878.1-201ENST00000565277 250 ntBASIC19.25■□□□□ 0.67
VPS53Q5VIR6 AC138207.8-201ENST00000579692 739 ntTSL 3 BASIC19.25■□□□□ 0.67
VPS53Q5VIR6 FSTL3-202ENST00000588773 746 ntTSL 2 BASIC19.25■□□□□ 0.67
VPS53Q5VIR6 GTF2IRD2-205ENST00000614386 578 ntTSL 1 (best) BASIC19.25■□□□□ 0.67
VPS53Q5VIR6 AL138828.2-201ENST00000615812 383 ntBASIC19.25■□□□□ 0.67
VPS53Q5VIR6 PHTF1-205ENST00000393357 3244 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
VPS53Q5VIR6 FAM160B1-202ENST00000369248 5810 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
VPS53Q5VIR6 ROR2-202ENST00000375715 2993 ntTSL 1 (best) BASIC19.25■□□□□ 0.67
VPS53Q5VIR6 RIMS3-201ENST00000372683 1408 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
VPS53Q5VIR6 PEX5-206ENST00000434354 2253 ntTSL 2 BASIC19.25■□□□□ 0.67
VPS53Q5VIR6 GLYCTK-207ENST00000477382 1304 ntTSL 1 (best) BASIC19.25■□□□□ 0.67
VPS53Q5VIR6 MKRN3-203ENST00000568252 1312 ntTSL 1 (best) BASIC19.25■□□□□ 0.67
VPS53Q5VIR6 CCNY-202ENST00000339497 4630 ntTSL 1 (best) BASIC19.24■□□□□ 0.67
VPS53Q5VIR6 MAN1C1-203ENST00000374332 4641 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
VPS53Q5VIR6 MAN1C1-208ENST00000611903 4647 ntTSL 5 BASIC19.24■□□□□ 0.67
VPS53Q5VIR6 BRSK2-204ENST00000526678 2091 ntAPPRIS ALT2 TSL 1 (best) BASIC19.24■□□□□ 0.67
VPS53Q5VIR6 ADAMTS18-201ENST00000282849 5913 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
VPS53Q5VIR6 KCND3-202ENST00000315987 2716 ntAPPRIS P4 TSL 1 (best) BASIC19.24■□□□□ 0.67
VPS53Q5VIR6 B3GNT4-206ENST00000546192 2749 ntAPPRIS P1 TSL 2 BASIC19.24■□□□□ 0.67
VPS53Q5VIR6 SPDEF-202ENST00000544425 1866 ntAPPRIS ALT1 TSL 2 BASIC19.24■□□□□ 0.67
VPS53Q5VIR6 MYLK3-202ENST00000536476 1795 ntAPPRIS ALT2 TSL 2 BASIC19.24■□□□□ 0.67
VPS53Q5VIR6 SEMA4B-202ENST00000411539 3807 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
VPS53Q5VIR6 KRT8-215ENST00000552150 1687 ntTSL 1 (best) BASIC19.24■□□□□ 0.67
VPS53Q5VIR6 PPP2R5D-206ENST00000472118 2963 ntAPPRIS ALT2 TSL 5 BASIC19.24■□□□□ 0.67
VPS53Q5VIR6 INTS4P1-202ENST00000587624 2985 ntTSL 5 BASIC19.24■□□□□ 0.67
VPS53Q5VIR6 LMF2-202ENST00000474879 2582 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
VPS53Q5VIR6 CD83-201ENST00000379153 2471 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
VPS53Q5VIR6 CCDC155-201ENST00000447857 2378 ntAPPRIS P2 TSL 1 (best) BASIC19.24■□□□□ 0.67
VPS53Q5VIR6 ANKRD24-202ENST00000318934 3906 ntAPPRIS P2 TSL 5 BASIC19.24■□□□□ 0.67
VPS53Q5VIR6 PCDHA6-203ENST00000529310 5374 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
VPS53Q5VIR6 NBL1-201ENST00000289749 731 ntAPPRIS ALT2 TSL 2 BASIC19.24■□□□□ 0.67
VPS53Q5VIR6 PNMT-202ENST00000394246 821 ntTSL 2 BASIC19.24■□□□□ 0.67
VPS53Q5VIR6 BAD-202ENST00000394531 631 ntTSL 3 BASIC19.24■□□□□ 0.67
VPS53Q5VIR6 MIR943-201ENST00000401286 94 ntBASIC19.24■□□□□ 0.67
VPS53Q5VIR6 AC124057.1-201ENST00000433035 404 ntTSL 5 BASIC19.24■□□□□ 0.67
VPS53Q5VIR6 AC097493.3-201ENST00000509725 367 ntBASIC19.24■□□□□ 0.67
VPS53Q5VIR6 AC007406.4-201ENST00000539568 765 ntTSL 1 (best) BASIC19.24■□□□□ 0.67
VPS53Q5VIR6 BAD-207ENST00000544785 525 ntTSL 3 BASIC19.24■□□□□ 0.67
VPS53Q5VIR6 COMMD4-207ENST00000562789 746 ntTSL 2 BASIC19.24■□□□□ 0.67
VPS53Q5VIR6 AC005498.2-205ENST00000593218 784 ntBASIC19.24■□□□□ 0.67
VPS53Q5VIR6 AQP12B-206ENST00000621682 1080 ntAPPRIS ALT2 TSL 5 BASIC19.24■□□□□ 0.67
VPS53Q5VIR6 WDR1-202ENST00000382451 2722 ntTSL 1 (best) BASIC19.24■□□□□ 0.67
VPS53Q5VIR6 TACR2-203ENST00000619173 1713 ntTSL 5 BASIC19.24■□□□□ 0.67
VPS53Q5VIR6 NELFA-203ENST00000411638 2199 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
VPS53Q5VIR6 FGFR3-204ENST00000412135 3951 ntTSL 5 BASIC19.24■□□□□ 0.67
VPS53Q5VIR6 C19orf48-201ENST00000345523 1503 ntAPPRIS P1 TSL 2 BASIC19.24■□□□□ 0.67
VPS53Q5VIR6 SMIM5-201ENST00000375215 1546 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
VPS53Q5VIR6 MVB12B-201ENST00000361171 4819 ntAPPRIS P1 TSL 2 BASIC19.24■□□□□ 0.67
VPS53Q5VIR6 RDH10-201ENST00000240285 3949 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
VPS53Q5VIR6 AC007326.2-201ENST00000624224 7579 ntBASIC19.24■□□□□ 0.67
VPS53Q5VIR6 HLF-201ENST00000226067 5547 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
VPS53Q5VIR6 NLE1-202ENST00000442241 2588 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
VPS53Q5VIR6 ZNF425-201ENST00000378061 3220 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
VPS53Q5VIR6 SIN3B-202ENST00000379803 5129 ntAPPRIS P3 TSL 1 (best) BASIC19.23■□□□□ 0.67
VPS53Q5VIR6 MAPKAP1-202ENST00000350766 3256 ntTSL 1 (best) BASIC19.23■□□□□ 0.67
VPS53Q5VIR6 ADAMTSL4-204ENST00000369041 2908 ntTSL 5 BASIC19.23■□□□□ 0.67
VPS53Q5VIR6 WDR61-201ENST00000267973 1387 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
VPS53Q5VIR6 AL035456.1-201ENST00000456064 1369 ntBASIC19.23■□□□□ 0.67
VPS53Q5VIR6 IL11RA-215ENST00000602473 1388 ntTSL 1 (best) BASIC19.23■□□□□ 0.67
VPS53Q5VIR6 TOMM40-207ENST00000592434 3415 ntAPPRIS ALT2 TSL 2 BASIC19.23■□□□□ 0.67
VPS53Q5VIR6 MSI2-204ENST00000442934 1624 ntTSL 2 BASIC19.23■□□□□ 0.67
VPS53Q5VIR6 BDKRB2-201ENST00000539359 1600 ntTSL 2 BASIC19.23■□□□□ 0.67
VPS53Q5VIR6 GLUD2-201ENST00000328078 2493 ntAPPRIS P1 BASIC19.23■□□□□ 0.67
VPS53Q5VIR6 SRP19-201ENST00000282999 937 ntTSL 1 (best) BASIC19.23■□□□□ 0.67
VPS53Q5VIR6 LRRC28-202ENST00000331450 752 ntTSL 1 (best) BASIC19.23■□□□□ 0.67
VPS53Q5VIR6 PDSS2-201ENST00000369031 1236 ntTSL 1 (best) BASIC19.23■□□□□ 0.67
VPS53Q5VIR6 TNNC2-201ENST00000372555 710 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
VPS53Q5VIR6 TNNT3-204ENST00000381558 1258 ntAPPRIS ALT2 TSL 5 BASIC19.23■□□□□ 0.67
VPS53Q5VIR6 AL080243.2-201ENST00000418783 582 ntBASIC19.23■□□□□ 0.67
VPS53Q5VIR6 SNX21-206ENST00000462307 1043 ntTSL 1 (best) BASIC19.23■□□□□ 0.67
VPS53Q5VIR6 SWI5-205ENST00000495313 466 ntAPPRIS ALT2 TSL 3 BASIC19.23■□□□□ 0.67
VPS53Q5VIR6 INS-205ENST00000512523 297 ntTSL 1 (best) BASIC19.23■□□□□ 0.67
VPS53Q5VIR6 SLCO2B1-205ENST00000525650 2121 ntTSL 2 BASIC19.23■□□□□ 0.67
VPS53Q5VIR6 AL079307.3-201ENST00000556114 283 ntBASIC19.23■□□□□ 0.67
VPS53Q5VIR6 AC087392.4-201ENST00000574560 486 ntTSL 3 BASIC19.23■□□□□ 0.67
VPS53Q5VIR6 GPER1-207ENST00000619052 571 ntTSL 2 BASIC19.23■□□□□ 0.67
VPS53Q5VIR6 FAM92A-219ENST00000620645 1014 ntAPPRIS ALT2 TSL 5 BASIC19.23■□□□□ 0.67
VPS53Q5VIR6 TIPRL-202ENST00000367833 3032 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
VPS53Q5VIR6 MFGE8-215ENST00000566497 1689 ntAPPRIS P1 TSL 5 BASIC19.23■□□□□ 0.67
VPS53Q5VIR6 ELAVL3-201ENST00000359227 4729 ntAPPRIS P3 TSL 3 BASIC19.23■□□□□ 0.67
VPS53Q5VIR6 CAMK2B-208ENST00000395747 1557 ntTSL 1 (best) BASIC19.23■□□□□ 0.67
VPS53Q5VIR6 SLC4A3-201ENST00000273063 4246 ntTSL 1 (best) BASIC19.23■□□□□ 0.67
VPS53Q5VIR6 LRRFIP1P1-201ENST00000498774 2246 ntBASIC19.23■□□□□ 0.67
VPS53Q5VIR6 XRCC1-202ENST00000543982 1994 ntTSL 2 BASIC19.23■□□□□ 0.67
VPS53Q5VIR6 ZSWIM8-221ENST00000604729 6075 ntAPPRIS ALT1 TSL 5 BASIC19.22■□□□□ 0.67
VPS53Q5VIR6 HACD3-206ENST00000565299 1465 ntTSL 5 BASIC19.22■□□□□ 0.67
VPS53Q5VIR6 CLEC18A-203ENST00000449317 1875 ntAPPRIS ALT2 TSL 5 BASIC19.22■□□□□ 0.67
VPS53Q5VIR6 NFATC3-222ENST00000575270 3824 ntTSL 5 BASIC19.22■□□□□ 0.67
VPS53Q5VIR6 NSUN5-203ENST00000428206 2269 ntAPPRIS ALT2 TSL 2 BASIC19.22■□□□□ 0.67
VPS53Q5VIR6 SNCAIP-202ENST00000261368 3745 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
VPS53Q5VIR6 MECR-201ENST00000263702 1353 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
Retrieved 100 of 98,524 protein–RNA pairs in 82.9 ms