Protein–RNA interactions for Protein: P57078

RIPK4, Receptor-interacting serine/threonine-protein kinase 4, humanhuman

Predictions only

Length 832 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RIPK4P57078 TM6SF2-201ENST00000389363 1505 ntAPPRIS P1 TSL 1 (best) BASIC20.79■□□□□ 0.92
RIPK4P57078 TRIM46-209ENST00000543729 1703 ntTSL 5 BASIC20.79■□□□□ 0.92
RIPK4P57078 LCE3E-201ENST00000368789 611 ntAPPRIS P1 TSL 1 (best) BASIC20.79■□□□□ 0.92
RIPK4P57078 OR5C1-201ENST00000373680 963 ntAPPRIS P1 BASIC20.79■□□□□ 0.92
RIPK4P57078 HRAS-202ENST00000397594 1099 ntTSL 2 BASIC20.79■□□□□ 0.92
RIPK4P57078 TCF20-203ENST00000404876 1058 ntTSL 3 BASIC20.79■□□□□ 0.92
RIPK4P57078 AL035633.1-201ENST00000406139 838 ntBASIC20.79■□□□□ 0.92
RIPK4P57078 USP40-206ENST00000443711 628 ntTSL 2 BASIC20.79■□□□□ 0.92
RIPK4P57078 GFM1-208ENST00000478576 2147 ntTSL 2 BASIC20.79■□□□□ 0.92
RIPK4P57078 SLC1A4-205ENST00000531327 1217 ntTSL 2 BASIC20.79■□□□□ 0.92
RIPK4P57078 FAM212B-207ENST00000534365 1217 ntTSL 5 BASIC20.79■□□□□ 0.92
RIPK4P57078 NUBP2-208ENST00000565987 1049 ntTSL 5 BASIC20.79■□□□□ 0.92
RIPK4P57078 ZNF226-211ENST00000588742 447 ntTSL 1 (best) BASIC20.79■□□□□ 0.92
RIPK4P57078 BARD1-209ENST00000613192 703 ntTSL 1 (best) BASIC20.79■□□□□ 0.92
RIPK4P57078 PCSK6-221ENST00000632686 1210 ntTSL 5 BASIC20.79■□□□□ 0.92
RIPK4P57078 CALM3-212ENST00000599839 1355 ntTSL 1 (best) BASIC20.79■□□□□ 0.92
RIPK4P57078 POLG2-201ENST00000539111 1564 ntAPPRIS P1 TSL 1 (best) BASIC20.79■□□□□ 0.92
RIPK4P57078 ANTXR1-201ENST00000303714 5859 ntAPPRIS P1 TSL 1 (best) BASIC20.79■□□□□ 0.92
RIPK4P57078 KIFC1-211ENST00000428849 2706 ntAPPRIS P1 TSL 1 (best) BASIC20.79■□□□□ 0.92
RIPK4P57078 MGRN1-201ENST00000262370 3968 ntAPPRIS P3 TSL 1 (best) BASIC20.79■□□□□ 0.92
RIPK4P57078 TMEM150A-203ENST00000409668 1776 ntAPPRIS P1 TSL 2 BASIC20.79■□□□□ 0.92
RIPK4P57078 BSG-204ENST00000545507 1795 ntTSL 1 (best) BASIC20.79■□□□□ 0.92
RIPK4P57078 CDS1-201ENST00000295887 4461 ntAPPRIS P1 TSL 1 (best) BASIC20.79■□□□□ 0.92
RIPK4P57078 OXA1L-203ENST00000412791 1440 ntTSL 5 BASIC20.78■□□□□ 0.92
RIPK4P57078 ALOX12-AS1-201ENST00000399540 1730 ntTSL 2 BASIC20.78■□□□□ 0.92
RIPK4P57078 NDUFS2-201ENST00000367993 2042 ntAPPRIS P3 TSL 1 (best) BASIC20.78■□□□□ 0.92
RIPK4P57078 ARHGAP11B-210ENST00000622744 2042 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
RIPK4P57078 MAP2K5-201ENST00000178640 2347 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
RIPK4P57078 HYAL1-202ENST00000320295 2324 ntAPPRIS P1 TSL 2 BASIC20.78■□□□□ 0.92
RIPK4P57078 GIT2-220ENST00000553118 2424 ntTSL 5 BASIC20.78■□□□□ 0.92
RIPK4P57078 SPCS2-201ENST00000263672 2708 ntAPPRIS P2 TSL 1 (best) BASIC20.78■□□□□ 0.92
RIPK4P57078 CROCCP1-201ENST00000426910 5675 ntBASIC20.78■□□□□ 0.92
RIPK4P57078 MIDN-201ENST00000300952 3790 ntAPPRIS P2 TSL 5 BASIC20.78■□□□□ 0.92
RIPK4P57078 PRAL-201ENST00000624952 3286 ntBASIC20.78■□□□□ 0.92
RIPK4P57078 TRIM27-202ENST00000377199 2967 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
RIPK4P57078 HNRNPF-204ENST00000443950 2755 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
RIPK4P57078 CXorf38-202ENST00000378421 2380 ntTSL 2 BASIC20.78■□□□□ 0.92
RIPK4P57078 DDHD1-201ENST00000323669 5503 ntTSL 2 BASIC20.78■□□□□ 0.92
RIPK4P57078 SPATA21-205ENST00000540400 1773 ntAPPRIS ALT2 TSL 1 (best) BASIC20.78■□□□□ 0.92
RIPK4P57078 CAPZB-204ENST00000375144 1568 ntTSL 1 (best) BASIC20.78■□□□□ 0.92
RIPK4P57078 RAPSN-202ENST00000352508 1452 ntTSL 1 (best) BASIC20.78■□□□□ 0.92
RIPK4P57078 ZFAND6-207ENST00000558494 1472 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
RIPK4P57078 AP003397.1-201ENST00000525706 1387 ntTSL 1 (best) BASIC20.78■□□□□ 0.92
RIPK4P57078 KRTAP6-3-201ENST00000391624 636 ntAPPRIS P1 BASIC20.78■□□□□ 0.92
RIPK4P57078 SNCA-205ENST00000394991 1290 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
RIPK4P57078 AP001056.1-201ENST00000411956 821 ntTSL 3 BASIC20.78■□□□□ 0.92
RIPK4P57078 MLF1-206ENST00000471745 1266 ntTSL 2 BASIC20.78■□□□□ 0.92
RIPK4P57078 CD81-207ENST00000481687 890 ntTSL 2 BASIC20.78■□□□□ 0.92
RIPK4P57078 MEIS3P1-201ENST00000495167 958 ntBASIC20.78■□□□□ 0.92
RIPK4P57078 CHMP4A-204ENST00000530996 967 ntTSL 3 BASIC20.78■□□□□ 0.92
RIPK4P57078 AP000721.1-201ENST00000535431 559 ntAPPRIS P1 TSL 5 BASIC20.78■□□□□ 0.92
RIPK4P57078 AC190387.1-201ENST00000551683 408 ntBASIC20.78■□□□□ 0.92
RIPK4P57078 AL132655.2-201ENST00000596276 594 ntBASIC20.78■□□□□ 0.92
RIPK4P57078 AL121845.3-201ENST00000490623 3119 ntTSL 5 BASIC20.78■□□□□ 0.92
RIPK4P57078 FAM83G-201ENST00000345041 2929 ntAPPRIS P1 TSL 5 BASIC20.78■□□□□ 0.92
RIPK4P57078 SYT15-202ENST00000374323 6428 ntTSL 2 BASIC20.78■□□□□ 0.92
RIPK4P57078 PCDHB6-202ENST00000622991 2608 ntTSL 2 BASIC20.78■□□□□ 0.92
RIPK4P57078 UNC5C-203ENST00000506749 2220 ntTSL 1 (best) BASIC20.78■□□□□ 0.92
RIPK4P57078 TCOF1-206ENST00000445265 4825 ntAPPRIS ALT2 TSL 5 BASIC20.78■□□□□ 0.92
RIPK4P57078 HS6ST2-201ENST00000370833 1938 ntTSL 5 BASIC20.78■□□□□ 0.92
RIPK4P57078 GIMAP1-201ENST00000307194 4420 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
RIPK4P57078 ALOX15B-205ENST00000573359 1809 ntTSL 1 (best) BASIC20.78■□□□□ 0.92
RIPK4P57078 PHKA1-202ENST00000373539 4476 ntTSL 5 BASIC20.78■□□□□ 0.92
RIPK4P57078 FOXP3-202ENST00000376199 2274 ntTSL 2 BASIC20.78■□□□□ 0.92
RIPK4P57078 C14orf93-207ENST00000397382 1986 ntAPPRIS P1 TSL 5 BASIC20.77■□□□□ 0.92
RIPK4P57078 G6PD-203ENST00000393564 1661 ntAPPRIS ALT2 TSL 5 BASIC20.77■□□□□ 0.92
RIPK4P57078 PCNP-201ENST00000265260 2342 ntAPPRIS P1 TSL 1 (best) BASIC20.77■□□□□ 0.92
RIPK4P57078 RELT-201ENST00000064780 3535 ntAPPRIS P1 TSL 1 (best) BASIC20.77■□□□□ 0.92
RIPK4P57078 AL445931.1-201ENST00000412181 2112 ntTSL 2 BASIC20.77■□□□□ 0.92
RIPK4P57078 C5orf24-202ENST00000394976 5065 ntAPPRIS P1 TSL 1 (best) BASIC20.77■□□□□ 0.92
RIPK4P57078 FAM83C-201ENST00000374408 3145 ntAPPRIS P1 TSL 1 (best) BASIC20.77■□□□□ 0.92
RIPK4P57078 ARL8B-201ENST00000256496 3005 ntAPPRIS P1 TSL 1 (best) BASIC20.77■□□□□ 0.92
RIPK4P57078 KDM6A-213ENST00000611820 5924 ntTSL 1 (best) BASIC20.77■□□□□ 0.92
RIPK4P57078 CALY-202ENST00000368555 783 ntTSL 2 BASIC20.77■□□□□ 0.92
RIPK4P57078 NTMT1-201ENST00000372480 852 ntAPPRIS P1 TSL 3 BASIC20.77■□□□□ 0.92
RIPK4P57078 IDH3B-202ENST00000380851 1230 ntAPPRIS ALT1 TSL 1 (best) BASIC20.77■□□□□ 0.92
RIPK4P57078 OSM-203ENST00000403463 464 ntTSL 3 BASIC20.77■□□□□ 0.92
RIPK4P57078 C4orf3-202ENST00000504110 667 ntAPPRIS P3 TSL 1 (best) BASIC20.77■□□□□ 0.92
RIPK4P57078 AC106772.1-201ENST00000506629 591 ntTSL 3 BASIC20.77■□□□□ 0.92
RIPK4P57078 RCHY1-210ENST00000513257 759 ntTSL 1 (best) BASIC20.77■□□□□ 0.92
RIPK4P57078 NEIL2-207ENST00000528323 998 ntTSL 2 BASIC20.77■□□□□ 0.92
RIPK4P57078 API5-211ENST00000534695 560 ntTSL 5 BASIC20.77■□□□□ 0.92
RIPK4P57078 TPRX2P-201ENST00000535362 881 ntBASIC20.77■□□□□ 0.92
RIPK4P57078 CDK4-206ENST00000549606 558 ntTSL 2 BASIC20.77■□□□□ 0.92
RIPK4P57078 AC091544.3-201ENST00000556424 531 ntTSL 2 BASIC20.77■□□□□ 0.92
RIPK4P57078 AC129507.1-201ENST00000570711 1013 ntTSL 2 BASIC20.77■□□□□ 0.92
RIPK4P57078 SECTM1-202ENST00000580437 1030 ntAPPRIS ALT2 TSL 2 BASIC20.77■□□□□ 0.92
RIPK4P57078 CENPT-235ENST00000626059 1737 ntTSL 5 BASIC20.77■□□□□ 0.92
RIPK4P57078 RAB40B-206ENST00000571995 3859 ntAPPRIS P1 TSL 1 (best) BASIC20.77■□□□□ 0.92
RIPK4P57078 CYP4F2-202ENST00000221700 2407 ntAPPRIS P2 TSL 1 (best) BASIC20.77■□□□□ 0.92
RIPK4P57078 FDX1-201ENST00000260270 3206 ntAPPRIS P1 TSL 1 (best) BASIC20.77■□□□□ 0.92
RIPK4P57078 C16orf58-201ENST00000327237 2793 ntAPPRIS P2 TSL 1 (best) BASIC20.77■□□□□ 0.92
RIPK4P57078 VPS16-203ENST00000380469 2318 ntTSL 2 BASIC20.77■□□□□ 0.92
RIPK4P57078 HFE2-205ENST00000497365 1419 ntTSL 1 (best) BASIC20.77■□□□□ 0.91
RIPK4P57078 ZCCHC18-203ENST00000537356 2907 ntAPPRIS P1 TSL 5 BASIC20.77■□□□□ 0.91
RIPK4P57078 NEO1-206ENST00000558964 4441 ntAPPRIS ALT2 TSL 1 (best) BASIC20.77■□□□□ 0.91
RIPK4P57078 ATG13-216ENST00000530500 2030 ntTSL 2 BASIC20.77■□□□□ 0.91
RIPK4P57078 POC1B-202ENST00000393179 3096 ntTSL 1 (best) BASIC20.76■□□□□ 0.91
RIPK4P57078 PTPRN2-205ENST00000409483 4711 ntAPPRIS ALT2 TSL 2 BASIC20.76■□□□□ 0.91
RIPK4P57078 SCRN1-205ENST00000425819 1552 ntTSL 2 BASIC20.76■□□□□ 0.91
Retrieved 100 of 98,524 protein–RNA pairs in 28.1 ms