Protein–RNA interactions for Protein: P01909

HLA-DQA1, HLA class II histocompatibility antigen, DQ alpha 1 chain, humanhuman

Predictions only

Length 254 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HLA-DQA1P01909 CRYBG2-210ENST00000527815 2523 ntAPPRIS ALT2 TSL 2 BASIC12.08□□□□□ -0.48
HLA-DQA1P01909 FLI1-201ENST00000281428 4151 ntTSL 1 (best) BASIC12.08□□□□□ -0.48
HLA-DQA1P01909 HS2ST1-202ENST00000370551 1585 ntTSL 1 (best) BASIC12.08□□□□□ -0.48
HLA-DQA1P01909 CAMK1D-201ENST00000378845 1578 ntAPPRIS ALT2 TSL 1 (best) BASIC12.08□□□□□ -0.48
HLA-DQA1P01909 E2F7-202ENST00000416496 5297 ntTSL 5 BASIC12.08□□□□□ -0.48
HLA-DQA1P01909 FSTL4-201ENST00000265342 5419 ntAPPRIS P1 TSL 5 BASIC12.08□□□□□ -0.48
HLA-DQA1P01909 ZNF575-202ENST00000458714 2285 ntTSL 2 BASIC12.08□□□□□ -0.48
HLA-DQA1P01909 KDM5B-202ENST00000367264 6449 ntTSL 1 (best) BASIC12.08□□□□□ -0.48
HLA-DQA1P01909 C1QTNF2-201ENST00000393975 2414 ntAPPRIS P1 TSL 1 (best) BASIC12.08□□□□□ -0.48
HLA-DQA1P01909 VAC14-202ENST00000536184 2161 ntTSL 2 BASIC12.08□□□□□ -0.48
HLA-DQA1P01909 ATP4B-201ENST00000335288 1488 ntAPPRIS P1 TSL 1 (best) BASIC12.08□□□□□ -0.48
HLA-DQA1P01909 STARD4-203ENST00000502322 1467 ntTSL 1 (best) BASIC12.08□□□□□ -0.48
HLA-DQA1P01909 TIE1-201ENST00000372476 3882 ntAPPRIS P1 TSL 1 (best) BASIC12.08□□□□□ -0.48
HLA-DQA1P01909 SERP1-201ENST00000239944 3171 ntAPPRIS P1 TSL 1 (best) BASIC12.08□□□□□ -0.48
HLA-DQA1P01909 C17orf107-201ENST00000381365 3199 ntAPPRIS P2 TSL 2 BASIC12.08□□□□□ -0.48
HLA-DQA1P01909 AL390038.1-201ENST00000419814 2481 ntTSL 1 (best) BASIC12.08□□□□□ -0.48
HLA-DQA1P01909 AL359258.1-201ENST00000438965 2481 ntTSL 1 (best) BASIC12.08□□□□□ -0.48
HLA-DQA1P01909 KDM6B-201ENST00000254846 6713 ntAPPRIS P2 TSL 1 (best) BASIC12.08□□□□□ -0.48
HLA-DQA1P01909 AMIGO2-201ENST00000266581 3763 ntAPPRIS P1 TSL 1 (best) BASIC12.07□□□□□ -0.48
HLA-DQA1P01909 TACR2-201ENST00000373306 2083 ntAPPRIS P1 TSL 1 (best) BASIC12.07□□□□□ -0.48
HLA-DQA1P01909 FASN-206ENST00000634990 8407 ntAPPRIS ALT1 TSL 5 BASIC12.07□□□□□ -0.48
HLA-DQA1P01909 SLC26A1-201ENST00000361661 3660 ntAPPRIS P1 TSL 1 (best) BASIC12.07□□□□□ -0.48
HLA-DQA1P01909 SLC52A3-205ENST00000632431 2694 ntAPPRIS P1 TSL 1 (best) BASIC12.07□□□□□ -0.48
HLA-DQA1P01909 DBNL-213ENST00000452943 1513 ntTSL 2 BASIC12.07□□□□□ -0.48
HLA-DQA1P01909 CEP131-208ENST00000575907 3444 ntAPPRIS ALT2 TSL 1 (best) BASIC12.07□□□□□ -0.48
HLA-DQA1P01909 DYNC1LI1-204ENST00000432458 1827 ntTSL 2 BASIC12.07□□□□□ -0.48
HLA-DQA1P01909 AFDN-211ENST00000447894 5475 ntAPPRIS P1 TSL 5 BASIC12.07□□□□□ -0.48
HLA-DQA1P01909 PPM1B-205ENST00000409432 3025 ntAPPRIS ALT1 TSL 1 (best) BASIC12.07□□□□□ -0.48
HLA-DQA1P01909 GCLM-204ENST00000615724 3008 ntTSL 1 (best) BASIC12.07□□□□□ -0.48
HLA-DQA1P01909 NABP2-201ENST00000267023 1417 ntAPPRIS P1 TSL 1 (best) BASIC12.07□□□□□ -0.48
HLA-DQA1P01909 ZNF256-201ENST00000282308 2172 ntAPPRIS P1 TSL 1 (best) BASIC12.07□□□□□ -0.48
HLA-DQA1P01909 RNF157-202ENST00000319945 2937 ntAPPRIS ALT2 TSL 2 BASIC12.07□□□□□ -0.48
HLA-DQA1P01909 IQCE-201ENST00000325979 2179 ntAPPRIS ALT2 TSL 5 BASIC12.07□□□□□ -0.48
HLA-DQA1P01909 C1orf43-202ENST00000362076 1551 ntTSL 1 (best) BASIC12.07□□□□□ -0.48
HLA-DQA1P01909 GORAB-202ENST00000367763 2189 ntAPPRIS P1 TSL 2 BASIC12.07□□□□□ -0.48
HLA-DQA1P01909 COMTD1-201ENST00000372538 976 ntAPPRIS P1 TSL 1 (best) BASIC12.07□□□□□ -0.48
HLA-DQA1P01909 SLC2A8-201ENST00000373352 914 ntTSL 2 BASIC12.07□□□□□ -0.48
HLA-DQA1P01909 SUV39H2-204ENST00000378325 1292 ntTSL 1 (best) BASIC12.07□□□□□ -0.48
HLA-DQA1P01909 LANCL3-202ENST00000378621 10298 ntTSL 1 (best) BASIC12.07□□□□□ -0.48
HLA-DQA1P01909 TBC1D7-205ENST00000379307 1084 ntTSL 1 (best) BASIC12.07□□□□□ -0.48
HLA-DQA1P01909 DDRGK1-202ENST00000380201 1128 ntTSL 2 BASIC12.07□□□□□ -0.48
HLA-DQA1P01909 YIF1B-204ENST00000392124 1404 ntTSL 1 (best) BASIC12.07□□□□□ -0.48
HLA-DQA1P01909 ISPD-201ENST00000399310 1709 ntTSL 1 (best) BASIC12.07□□□□□ -0.48
HLA-DQA1P01909 AL603832.1-201ENST00000421943 449 ntTSL 5 BASIC12.07□□□□□ -0.48
HLA-DQA1P01909 NKTR-203ENST00000442970 646 ntTSL 2 BASIC12.07□□□□□ -0.48
HLA-DQA1P01909 AC116353.4-201ENST00000507279 576 ntTSL 4 BASIC12.07□□□□□ -0.48
HLA-DQA1P01909 VENTXP5-201ENST00000523979 775 ntBASIC12.07□□□□□ -0.48
HLA-DQA1P01909 STC1-202ENST00000524323 1748 ntTSL 1 (best) BASIC12.07□□□□□ -0.48
HLA-DQA1P01909 LHX6-207ENST00000541397 2942 ntTSL 2 BASIC12.07□□□□□ -0.48
HLA-DQA1P01909 CLN6-204ENST00000564752 900 ntTSL 3 BASIC12.07□□□□□ -0.48
HLA-DQA1P01909 AC020558.2-201ENST00000582325 795 ntTSL 3 BASIC12.07□□□□□ -0.48
HLA-DQA1P01909 GPR32P1-201ENST00000601788 811 ntBASIC12.07□□□□□ -0.48
HLA-DQA1P01909 AC243829.1-201ENST00000615128 1059 ntTSL 2 BASIC12.07□□□□□ -0.48
HLA-DQA1P01909 PPP1R18-206ENST00000615892 1448 ntTSL 1 (best) BASIC12.07□□□□□ -0.48
HLA-DQA1P01909 AL590326.2-201ENST00000625139 305 ntBASIC12.07□□□□□ -0.48
HLA-DQA1P01909 CLN6-214ENST00000636314 442 ntTSL 3 BASIC12.07□□□□□ -0.48
HLA-DQA1P01909 SMIM29-209ENST00000636500 1186 ntTSL 1 (best) BASIC12.07□□□□□ -0.48
HLA-DQA1P01909 ANKRD11-203ENST00000378330 9132 ntAPPRIS P2 TSL 1 (best) BASIC12.07□□□□□ -0.48
HLA-DQA1P01909 ATP2B3-201ENST00000263519 6420 ntAPPRIS P1 TSL 1 (best) BASIC12.07□□□□□ -0.48
HLA-DQA1P01909 ITGB8-201ENST00000222573 8751 ntAPPRIS P1 TSL 1 (best) BASIC12.07□□□□□ -0.48
HLA-DQA1P01909 MOB3C-203ENST00000371940 5725 ntAPPRIS P1 TSL 1 (best) BASIC12.07□□□□□ -0.48
HLA-DQA1P01909 PIGS-203ENST00000395346 2815 ntTSL 1 (best) BASIC12.07□□□□□ -0.48
HLA-DQA1P01909 SYMPK-213ENST00000599460 5449 ntTSL 1 (best) BASIC12.07□□□□□ -0.48
HLA-DQA1P01909 SNAP91-213ENST00000521485 4521 ntAPPRIS ALT2 TSL 5 BASIC12.07□□□□□ -0.48
HLA-DQA1P01909 SYNRG-217ENST00000612223 8229 ntAPPRIS P4 TSL 1 (best) BASIC12.07□□□□□ -0.48
HLA-DQA1P01909 AC079447.1-201ENST00000424491 1947 ntAPPRIS P1 TSL 2 BASIC12.07□□□□□ -0.48
HLA-DQA1P01909 ACSL1-202ENST00000454703 3636 ntTSL 5 BASIC12.07□□□□□ -0.48
HLA-DQA1P01909 RBM4-204ENST00000408993 1763 ntAPPRIS P1 TSL 5 BASIC12.07□□□□□ -0.48
HLA-DQA1P01909 IFNLR1-205ENST00000374421 1476 ntAPPRIS ALT2 TSL 1 (best) BASIC12.07□□□□□ -0.48
HLA-DQA1P01909 SH2B1-206ENST00000545570 1488 ntTSL 2 BASIC12.07□□□□□ -0.48
HLA-DQA1P01909 TTC39A-208ENST00000413473 2718 ntAPPRIS P4 TSL 1 (best) BASIC12.07□□□□□ -0.48
HLA-DQA1P01909 VPS37D-202ENST00000451519 1303 ntTSL 5 BASIC12.07□□□□□ -0.48
HLA-DQA1P01909 COQ7-209ENST00000569127 2575 ntTSL 2 BASIC12.07□□□□□ -0.48
HLA-DQA1P01909 SYNPO2L-202ENST00000394810 4921 ntAPPRIS P1 TSL 1 (best) BASIC12.07□□□□□ -0.48
HLA-DQA1P01909 MEX3B-201ENST00000329713 3528 ntAPPRIS P1 TSL 1 (best) BASIC12.07□□□□□ -0.48
HLA-DQA1P01909 MAP2K7-201ENST00000397979 3361 ntAPPRIS P3 TSL 1 (best) BASIC12.07□□□□□ -0.48
HLA-DQA1P01909 PCDHA5-201ENST00000529619 4157 ntTSL 1 (best) BASIC12.07□□□□□ -0.48
HLA-DQA1P01909 TNFSF13-201ENST00000338784 1971 ntAPPRIS P3 TSL 1 (best) BASIC12.07□□□□□ -0.48
HLA-DQA1P01909 ZNF596-201ENST00000308811 2783 ntAPPRIS P1 TSL 1 (best) BASIC12.07□□□□□ -0.48
HLA-DQA1P01909 DHCR7-202ENST00000407721 2601 ntAPPRIS P1 TSL 1 (best) BASIC12.07□□□□□ -0.48
HLA-DQA1P01909 AL035685.1-202ENST00000637341 1688 ntTSL 5 BASIC12.06□□□□□ -0.48
HLA-DQA1P01909 RALGAPA1-201ENST00000307138 7911 ntAPPRIS P1 TSL 1 (best) BASIC12.06□□□□□ -0.48
HLA-DQA1P01909 KIF1A-213ENST00000498729 9221 ntTSL 5 BASIC12.06□□□□□ -0.48
HLA-DQA1P01909 COL8A2-201ENST00000303143 4447 ntAPPRIS P1 TSL 2 BASIC12.06□□□□□ -0.48
HLA-DQA1P01909 MBD1-205ENST00000353909 2820 ntTSL 1 (best) BASIC12.06□□□□□ -0.48
HLA-DQA1P01909 RNF113B-201ENST00000267291 1376 ntAPPRIS P1 TSL 1 (best) BASIC12.06□□□□□ -0.48
HLA-DQA1P01909 AGPAT2-201ENST00000371694 1391 ntTSL 1 (best) BASIC12.06□□□□□ -0.48
HLA-DQA1P01909 RDX-218ENST00000544551 4117 ntTSL 2 BASIC12.06□□□□□ -0.48
HLA-DQA1P01909 BRF1-203ENST00000379937 3314 ntTSL 1 (best) BASIC12.06□□□□□ -0.48
HLA-DQA1P01909 PVR-202ENST00000344956 3166 ntAPPRIS ALT2 TSL 5 BASIC12.06□□□□□ -0.48
HLA-DQA1P01909 MEOX2-201ENST00000262041 2500 ntAPPRIS P1 TSL 1 (best) BASIC12.06□□□□□ -0.48
HLA-DQA1P01909 PRSS30P-201ENST00000390681 2881 ntTSL 1 (best) BASIC12.06□□□□□ -0.48
HLA-DQA1P01909 METTL25-201ENST00000248306 2093 ntAPPRIS P1 TSL 1 (best) BASIC12.06□□□□□ -0.48
HLA-DQA1P01909 MYRF-203ENST00000389602 2052 ntTSL 2 BASIC12.06□□□□□ -0.48
HLA-DQA1P01909 ZSWIM8-221ENST00000604729 6075 ntAPPRIS ALT1 TSL 5 BASIC12.06□□□□□ -0.48
HLA-DQA1P01909 PBX3-203ENST00000373487 2902 ntTSL 5 BASIC12.06□□□□□ -0.48
HLA-DQA1P01909 PRR30-202ENST00000432962 1440 ntAPPRIS ALT2 TSL 3 BASIC12.06□□□□□ -0.48
HLA-DQA1P01909 IMPACT-201ENST00000284202 3792 ntAPPRIS P1 TSL 1 (best) BASIC12.06□□□□□ -0.48
HLA-DQA1P01909 NDFIP2-205ENST00000612570 4648 ntAPPRIS P1 TSL 1 (best) BASIC12.06□□□□□ -0.48
HLA-DQA1P01909 AC009090.5-201ENST00000624886 2285 ntBASIC12.06□□□□□ -0.48
Retrieved 100 of 98,524 protein–RNA pairs in 65.5 ms