Protein–RNA interactions for Protein: Q9Y2N7

HIF3A, Hypoxia-inducible factor 3-alpha, humanhuman

Predictions only

Length 669 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HIF3AQ9Y2N7 ACOX3-203ENST00000503233 2253 ntAPPRIS P1 TSL 1 (best) BASIC14.45□□□□□ -0.1
HIF3AQ9Y2N7 SSR4P1-203ENST00000599569 2260 ntBASIC14.45□□□□□ -0.1
HIF3AQ9Y2N7 TMEM139-205ENST00000410004 2114 ntAPPRIS P1 TSL 2 BASIC14.45□□□□□ -0.1
HIF3AQ9Y2N7 CRK-202ENST00000398970 3675 ntTSL 1 (best) BASIC14.45□□□□□ -0.1
HIF3AQ9Y2N7 CRY2-201ENST00000417225 2053 ntTSL 2 BASIC14.45□□□□□ -0.1
HIF3AQ9Y2N7 DKC1-213ENST00000620277 3079 ntAPPRIS ALT2 TSL 1 (best) BASIC14.45□□□□□ -0.1
HIF3AQ9Y2N7 GLIDR-204ENST00000638724 1765 ntTSL 5 BASIC14.45□□□□□ -0.1
HIF3AQ9Y2N7 TUBB-206ENST00000330914 2632 ntTSL 2 BASIC14.45□□□□□ -0.1
HIF3AQ9Y2N7 MIR137HG-202ENST00000424528 2639 ntTSL 2 BASIC14.45□□□□□ -0.1
HIF3AQ9Y2N7 KMT2E-201ENST00000257745 6714 ntAPPRIS P1 TSL 1 (best) BASIC14.44□□□□□ -0.1
HIF3AQ9Y2N7 ZKSCAN2-201ENST00000328086 7523 ntAPPRIS P1 TSL 1 (best) BASIC14.44□□□□□ -0.1
HIF3AQ9Y2N7 MMP2-201ENST00000219070 3741 ntAPPRIS P1 TSL 1 (best) BASIC14.44□□□□□ -0.1
HIF3AQ9Y2N7 OTX1-201ENST00000282549 2861 ntAPPRIS P1 TSL 1 (best) BASIC14.44□□□□□ -0.1
HIF3AQ9Y2N7 OTX1-202ENST00000366671 2861 ntAPPRIS P1 TSL 3 BASIC14.44□□□□□ -0.1
HIF3AQ9Y2N7 FBN1-205ENST00000560355 4109 ntTSL 1 (best) BASIC14.44□□□□□ -0.1
HIF3AQ9Y2N7 PAXBP1-202ENST00000331923 3995 ntAPPRIS P1 TSL 1 (best) BASIC14.44□□□□□ -0.1
HIF3AQ9Y2N7 CACNA2D3-201ENST00000288197 3671 ntAPPRIS ALT2 TSL 1 (best) BASIC14.44□□□□□ -0.1
HIF3AQ9Y2N7 CACNA2D3-206ENST00000474759 3675 ntAPPRIS P2 TSL 1 (best) BASIC14.44□□□□□ -0.1
HIF3AQ9Y2N7 RUNDC3B-202ENST00000338056 4099 ntTSL 2 BASIC14.44□□□□□ -0.1
HIF3AQ9Y2N7 RUNX1T1-246ENST00000523629 7537 ntAPPRIS P3 TSL 5 BASIC14.44□□□□□ -0.1
HIF3AQ9Y2N7 TBC1D22A-205ENST00000406733 2267 ntTSL 2 BASIC14.44□□□□□ -0.1
HIF3AQ9Y2N7 SATB2-206ENST00000457245 2656 ntAPPRIS P1 TSL 2 BASIC14.44□□□□□ -0.1
HIF3AQ9Y2N7 AC092850.2-201ENST00000623821 2697 ntBASIC14.44□□□□□ -0.1
HIF3AQ9Y2N7 LCK-206ENST00000373564 2137 ntTSL 5 BASIC14.44□□□□□ -0.1
HIF3AQ9Y2N7 BNIP3P1-202ENST00000550043 1585 ntBASIC14.44□□□□□ -0.1
HIF3AQ9Y2N7 GUCD1-204ENST00000407471 3482 ntAPPRIS P3 TSL 5 BASIC14.44□□□□□ -0.1
HIF3AQ9Y2N7 C5orf24-204ENST00000504727 2923 ntTSL 1 (best) BASIC14.44□□□□□ -0.1
HIF3AQ9Y2N7 RNASEH2B-202ENST00000422660 4830 ntTSL 5 BASIC14.44□□□□□ -0.1
HIF3AQ9Y2N7 PPT1-215ENST00000641471 2368 ntBASIC14.44□□□□□ -0.1
HIF3AQ9Y2N7 CICP13-201ENST00000422015 2789 ntBASIC14.44□□□□□ -0.1
HIF3AQ9Y2N7 C16orf58-211ENST00000570164 2783 ntAPPRIS ALT1 TSL 5 BASIC14.44□□□□□ -0.1
HIF3AQ9Y2N7 LRRFIP1P1-201ENST00000498774 2246 ntBASIC14.44□□□□□ -0.1
HIF3AQ9Y2N7 PAK4-208ENST00000599386 5735 ntTSL 1 (best) BASIC14.44□□□□□ -0.1
HIF3AQ9Y2N7 CGREF1-201ENST00000260595 1177 ntAPPRIS ALT2 TSL 5 BASIC14.44□□□□□ -0.1
HIF3AQ9Y2N7 KLHL7-201ENST00000322275 969 ntTSL 1 (best) BASIC14.44□□□□□ -0.1
HIF3AQ9Y2N7 MUC1-204ENST00000343256 648 ntTSL 1 (best) BASIC14.44□□□□□ -0.1
HIF3AQ9Y2N7 HLA-H-201ENST00000383620 1096 ntBASIC14.44□□□□□ -0.1
HIF3AQ9Y2N7 YBX2P1-201ENST00000394192 760 ntBASIC14.44□□□□□ -0.1
HIF3AQ9Y2N7 AC004987.2-201ENST00000395959 1148 ntBASIC14.44□□□□□ -0.1
HIF3AQ9Y2N7 C22orf39-203ENST00000399568 1005 ntTSL 1 (best) BASIC14.44□□□□□ -0.1
HIF3AQ9Y2N7 AL158071.2-201ENST00000423380 815 ntTSL 3 BASIC14.44□□□□□ -0.1
HIF3AQ9Y2N7 RPS8P6-201ENST00000426177 609 ntBASIC14.44□□□□□ -0.1
HIF3AQ9Y2N7 AC004832.2-201ENST00000426397 482 ntBASIC14.44□□□□□ -0.1
HIF3AQ9Y2N7 LINC01640-201ENST00000452505 550 ntTSL 4 BASIC14.44□□□□□ -0.1
HIF3AQ9Y2N7 AC079140.1-201ENST00000508039 487 ntBASIC14.44□□□□□ -0.1
HIF3AQ9Y2N7 RNA5SP410-201ENST00000516285 106 ntBASIC14.44□□□□□ -0.1
HIF3AQ9Y2N7 PGAM5P1-201ENST00000518923 814 ntBASIC14.44□□□□□ -0.1
HIF3AQ9Y2N7 KRT18P58-201ENST00000527480 1120 ntBASIC14.44□□□□□ -0.1
HIF3AQ9Y2N7 AKIP1-211ENST00000534506 576 ntTSL 3 BASIC14.44□□□□□ -0.1
HIF3AQ9Y2N7 ELOF1-204ENST00000587806 1172 ntTSL 2 BASIC14.44□□□□□ -0.1
HIF3AQ9Y2N7 CHMP4A-211ENST00000609024 735 ntAPPRIS P1 TSL 1 (best) BASIC14.44□□□□□ -0.1
HIF3AQ9Y2N7 C20orf181-201ENST00000623918 480 ntBASIC14.44□□□□□ -0.1
HIF3AQ9Y2N7 CASR-202ENST00000498619 5009 ntTSL 1 (best) BASIC14.44□□□□□ -0.1
HIF3AQ9Y2N7 PHTF1-201ENST00000357783 2747 ntTSL 1 (best) BASIC14.44□□□□□ -0.1
HIF3AQ9Y2N7 SLC34A1-204ENST00000512593 1912 ntTSL 2 BASIC14.44□□□□□ -0.1
HIF3AQ9Y2N7 GMPPA-202ENST00000341142 1524 ntAPPRIS P1 TSL 5 BASIC14.44□□□□□ -0.1
HIF3AQ9Y2N7 ZNF764-202ENST00000395091 2970 ntAPPRIS ALT1 TSL 2 BASIC14.44□□□□□ -0.1
HIF3AQ9Y2N7 CEP170B-204ENST00000556508 6683 ntTSL 5 BASIC14.44□□□□□ -0.1
HIF3AQ9Y2N7 SURF6-201ENST00000372022 4447 ntAPPRIS P1 TSL 1 (best) BASIC14.44□□□□□ -0.1
HIF3AQ9Y2N7 C9orf78-201ENST00000372447 1795 ntAPPRIS P1 TSL 1 (best) BASIC14.44□□□□□ -0.1
HIF3AQ9Y2N7 GPX3-210ENST00000622181 1757 ntAPPRIS ALT1 TSL 5 BASIC14.44□□□□□ -0.1
HIF3AQ9Y2N7 MAP4K1-203ENST00000586296 1363 ntTSL 5 BASIC14.44□□□□□ -0.1
HIF3AQ9Y2N7 KLK5-203ENST00000593428 1365 ntAPPRIS P1 TSL 1 (best) BASIC14.44□□□□□ -0.1
HIF3AQ9Y2N7 PTBP1-202ENST00000350092 3069 ntAPPRIS ALT1 TSL 1 (best) BASIC14.44□□□□□ -0.1
HIF3AQ9Y2N7 ARHGEF28-211ENST00000512883 2936 ntTSL 2 BASIC14.44□□□□□ -0.1
HIF3AQ9Y2N7 KLHDC2-206ENST00000554589 1641 ntTSL 5 BASIC14.44□□□□□ -0.1
HIF3AQ9Y2N7 GCK-203ENST00000395796 2539 ntTSL 1 (best) BASIC14.44□□□□□ -0.1
HIF3AQ9Y2N7 C14orf79-205ENST00000549240 2503 ntAPPRIS ALT2 TSL 2 BASIC14.44□□□□□ -0.1
HIF3AQ9Y2N7 PER1-201ENST00000317276 4707 ntAPPRIS P1 TSL 1 (best) BASIC14.44□□□□□ -0.1
HIF3AQ9Y2N7 NEFL-203ENST00000619417 1879 ntTSL 5 BASIC14.44□□□□□ -0.1
HIF3AQ9Y2N7 MPPED1-202ENST00000417669 3657 ntAPPRIS P1 TSL 5 BASIC14.44□□□□□ -0.1
HIF3AQ9Y2N7 ABCB6-201ENST00000265316 3016 ntAPPRIS P1 TSL 1 (best) BASIC14.44□□□□□ -0.1
HIF3AQ9Y2N7 IGSF11-209ENST00000491903 1487 ntTSL 2 BASIC14.44□□□□□ -0.1
HIF3AQ9Y2N7 NOS1AP-201ENST00000361897 4931 ntAPPRIS P3 TSL 1 (best) BASIC14.44□□□□□ -0.1
HIF3AQ9Y2N7 HSPH1-201ENST00000320027 5191 ntAPPRIS P1 TSL 1 (best) BASIC14.44□□□□□ -0.1
HIF3AQ9Y2N7 TMBIM7P-203ENST00000641617 1718 ntBASIC14.44□□□□□ -0.1
HIF3AQ9Y2N7 AC013268.4-201ENST00000637413 2228 ntBASIC14.43□□□□□ -0.1
HIF3AQ9Y2N7 LATS2-201ENST00000382592 5511 ntAPPRIS P1 TSL 1 (best) BASIC14.43□□□□□ -0.1
HIF3AQ9Y2N7 SLC1A7-204ENST00000611397 2499 ntTSL 1 (best) BASIC14.43□□□□□ -0.1
HIF3AQ9Y2N7 KIF21A-202ENST00000361961 6601 ntTSL 1 (best) BASIC14.43□□□□□ -0.1
HIF3AQ9Y2N7 NSL1-203ENST00000366978 1344 ntTSL 2 BASIC14.43□□□□□ -0.1
HIF3AQ9Y2N7 SAP130-203ENST00000357702 4173 ntTSL 1 (best) BASIC14.43□□□□□ -0.1
HIF3AQ9Y2N7 CACNA1I-203ENST00000404898 9892 ntAPPRIS ALT2 TSL 1 (best) BASIC14.43□□□□□ -0.1
HIF3AQ9Y2N7 NUTM2D-202ENST00000412718 5543 ntAPPRIS ALT2 TSL 5 BASIC14.43□□□□□ -0.1
HIF3AQ9Y2N7 APBB2-204ENST00000502841 1681 ntTSL 2 BASIC14.43□□□□□ -0.1
HIF3AQ9Y2N7 ATP11B-201ENST00000323116 7325 ntAPPRIS P1 TSL 2 BASIC14.43□□□□□ -0.1
HIF3AQ9Y2N7 UNC5C-202ENST00000504962 1789 ntTSL 2 BASIC14.43□□□□□ -0.1
HIF3AQ9Y2N7 SHISA2-201ENST00000319420 2860 ntAPPRIS P1 TSL 1 (best) BASIC14.43□□□□□ -0.1
HIF3AQ9Y2N7 GLS2-201ENST00000311966 2623 ntAPPRIS P1 TSL 1 (best) BASIC14.43□□□□□ -0.1
HIF3AQ9Y2N7 AC091100.1-201ENST00000558424 2354 ntTSL 2 BASIC14.43□□□□□ -0.1
HIF3AQ9Y2N7 RPS27A-201ENST00000272317 1071 ntAPPRIS P1 TSL 1 (best) BASIC14.43□□□□□ -0.1
HIF3AQ9Y2N7 HRCT1-201ENST00000354323 950 ntAPPRIS P1 BASIC14.43□□□□□ -0.1
HIF3AQ9Y2N7 PTMS-202ENST00000389462 773 ntTSL 2 BASIC14.43□□□□□ -0.1
HIF3AQ9Y2N7 ATP5G3-202ENST00000392541 842 ntAPPRIS P1 TSL 1 (best) BASIC14.43□□□□□ -0.1
HIF3AQ9Y2N7 TMEM210-201ENST00000413619 873 ntAPPRIS P1 TSL 5 BASIC14.43□□□□□ -0.1
HIF3AQ9Y2N7 PIK3CD-AS2-201ENST00000415330 939 ntTSL 5 BASIC14.43□□□□□ -0.1
HIF3AQ9Y2N7 HRAS-204ENST00000417302 1233 ntTSL 5 BASIC14.43□□□□□ -0.1
HIF3AQ9Y2N7 MKNK2P1-201ENST00000437526 628 ntBASIC14.43□□□□□ -0.1
HIF3AQ9Y2N7 HRAS-205ENST00000451590 1151 ntAPPRIS P1 TSL 2 BASIC14.43□□□□□ -0.1
HIF3AQ9Y2N7 KRT8P48-201ENST00000515599 1220 ntBASIC14.43□□□□□ -0.1
Retrieved 100 of 98,524 protein–RNA pairs in 32.1 ms