Protein–RNA interactions for Protein: P56524

HDAC4, Histone deacetylase 4, humanhuman

Predictions only

Length 1,084 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC4P56524 TRIM24-202ENST00000415680 3799 ntAPPRIS ALT2 TSL 1 (best) BASIC16.7■□□□□ 0.26
HDAC4P56524 GCLC-213ENST00000616923 3694 ntTSL 1 (best) BASIC16.7■□□□□ 0.26
HDAC4P56524 IFT140-201ENST00000361339 2987 ntTSL 1 (best) BASIC16.7■□□□□ 0.26
HDAC4P56524 LUC7L3-202ENST00000393227 2284 ntTSL 1 (best) BASIC16.7■□□□□ 0.26
HDAC4P56524 C1orf43-202ENST00000362076 1551 ntTSL 1 (best) BASIC16.7■□□□□ 0.26
HDAC4P56524 RUFY2-203ENST00000388768 4502 ntTSL 2 BASIC16.7■□□□□ 0.26
HDAC4P56524 CA4-201ENST00000300900 1154 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
HDAC4P56524 ZUFSP-201ENST00000368573 1225 ntTSL 5 BASIC16.7■□□□□ 0.26
HDAC4P56524 NDUFA3-204ENST00000391764 267 ntTSL 3 BASIC16.7■□□□□ 0.26
HDAC4P56524 NRSN2-AS1-202ENST00000442637 762 ntTSL 3 BASIC16.7■□□□□ 0.26
HDAC4P56524 SSNA1-204ENST00000464553 723 ntTSL 2 BASIC16.7■□□□□ 0.26
HDAC4P56524 AC021744.1-201ENST00000518354 453 ntTSL 3 BASIC16.7■□□□□ 0.26
HDAC4P56524 AP002748.3-201ENST00000527092 828 ntTSL 3 BASIC16.7■□□□□ 0.26
HDAC4P56524 AC087392.4-201ENST00000574560 486 ntTSL 3 BASIC16.7■□□□□ 0.26
HDAC4P56524 SEC11C-205ENST00000588875 718 ntTSL 2 BASIC16.7■□□□□ 0.26
HDAC4P56524 MRPL34-202ENST00000594999 555 ntAPPRIS P2 TSL 2 BASIC16.7■□□□□ 0.26
HDAC4P56524 RN7SL828P-201ENST00000607615 303 ntBASIC16.7■□□□□ 0.26
HDAC4P56524 GRAMD2B-217ENST00000515200 3109 ntTSL 5 BASIC16.7■□□□□ 0.26
HDAC4P56524 LSP1-204ENST00000406638 2640 ntAPPRIS ALT2 TSL 2 BASIC16.7■□□□□ 0.26
HDAC4P56524 AXIN2-202ENST00000375702 2541 ntTSL 1 (best) BASIC16.7■□□□□ 0.26
HDAC4P56524 CPEB2-201ENST00000259997 5612 ntAPPRIS ALT2 TSL 5 BASIC16.7■□□□□ 0.26
HDAC4P56524 TSPY26P-202ENST00000565928 3884 ntBASIC16.7■□□□□ 0.26
HDAC4P56524 RAB40B-206ENST00000571995 3859 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
HDAC4P56524 SLITRK4-201ENST00000338017 3357 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
HDAC4P56524 CYP11A1-201ENST00000268053 1934 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
HDAC4P56524 C2orf54-202ENST00000388934 1911 ntAPPRIS P4 TSL 2 BASIC16.7■□□□□ 0.26
HDAC4P56524 MPPE1-211ENST00000588072 4236 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
HDAC4P56524 ACHE-202ENST00000302913 2956 ntTSL 1 (best) BASIC16.7■□□□□ 0.26
HDAC4P56524 INTS4P1-202ENST00000587624 2985 ntTSL 5 BASIC16.7■□□□□ 0.26
HDAC4P56524 MAD1L1-202ENST00000399654 2762 ntAPPRIS P1 TSL 5 BASIC16.7■□□□□ 0.26
HDAC4P56524 MCF2L2-201ENST00000328913 4980 ntAPPRIS P2 TSL 5 BASIC16.7■□□□□ 0.26
HDAC4P56524 RBFOX3-212ENST00000584778 1547 ntAPPRIS ALT2 TSL 5 BASIC16.7■□□□□ 0.26
HDAC4P56524 C15orf62-201ENST00000344320 2370 ntAPPRIS P1 BASIC16.7■□□□□ 0.26
HDAC4P56524 TBC1D9B-201ENST00000355235 5119 ntAPPRIS P3 TSL 5 BASIC16.7■□□□□ 0.26
HDAC4P56524 NDRG1-202ENST00000414097 3755 ntAPPRIS P1 TSL 2 BASIC16.69■□□□□ 0.26
HDAC4P56524 FAM192A-201ENST00000309137 2848 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
HDAC4P56524 SCAF1-201ENST00000360565 4306 ntAPPRIS P2 TSL 2 BASIC16.69■□□□□ 0.26
HDAC4P56524 ADAM15-205ENST00000360674 2732 ntAPPRIS ALT2 TSL 1 (best) BASIC16.69■□□□□ 0.26
HDAC4P56524 TCTN1-202ENST00000397655 1879 ntTSL 1 (best) BASIC16.69■□□□□ 0.26
HDAC4P56524 AC068587.6-202ENST00000641839 5619 ntBASIC16.69■□□□□ 0.26
HDAC4P56524 PLPPR5-201ENST00000263177 3288 ntAPPRIS P4 TSL 1 (best) BASIC16.69■□□□□ 0.26
HDAC4P56524 TMEM57-202ENST00000399766 3294 ntTSL 1 (best) BASIC16.69■□□□□ 0.26
HDAC4P56524 ZBTB17-216ENST00000537142 2511 ntTSL 2 BASIC16.69■□□□□ 0.26
HDAC4P56524 DACT1-202ENST00000395153 3734 ntAPPRIS ALT2 TSL 5 BASIC16.69■□□□□ 0.26
HDAC4P56524 NBEA-201ENST00000310336 10794 ntAPPRIS ALT1 TSL 1 (best) BASIC16.69■□□□□ 0.26
HDAC4P56524 NBEA-208ENST00000629018 10791 ntAPPRIS ALT1 TSL 5 BASIC16.69■□□□□ 0.26
HDAC4P56524 ZNF135-202ENST00000359978 2120 ntTSL 2 BASIC16.69■□□□□ 0.26
HDAC4P56524 SLIT3-201ENST00000332966 4895 ntAPPRIS ALT2 TSL 1 (best) BASIC16.69■□□□□ 0.26
HDAC4P56524 KRT15-201ENST00000254043 5237 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
HDAC4P56524 C5orf24-204ENST00000504727 2923 ntTSL 1 (best) BASIC16.69■□□□□ 0.26
HDAC4P56524 TECR-201ENST00000215567 1171 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
HDAC4P56524 POP7-201ENST00000303151 927 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
HDAC4P56524 IGHV3-23-201ENST00000390609 432 ntAPPRIS P1 BASIC16.69■□□□□ 0.26
HDAC4P56524 AL391845.1-202ENST00000449154 437 ntTSL 3 BASIC16.69■□□□□ 0.26
HDAC4P56524 FAM72B-205ENST00000471903 676 ntTSL 5 BASIC16.69■□□□□ 0.26
HDAC4P56524 SLBP-205ENST00000488267 987 ntTSL 2 BASIC16.69■□□□□ 0.26
HDAC4P56524 LEKR1-211ENST00000498839 616 ntTSL 3 BASIC16.69■□□□□ 0.26
HDAC4P56524 AC124067.2-201ENST00000521989 510 ntTSL 2 BASIC16.69■□□□□ 0.26
HDAC4P56524 VPS29-207ENST00000549970 818 ntTSL 3 BASIC16.69■□□□□ 0.26
HDAC4P56524 AC129926.1-201ENST00000581944 614 ntTSL 2 BASIC16.69■□□□□ 0.26
HDAC4P56524 Z92544.3-201ENST00000624747 417 ntBASIC16.69■□□□□ 0.26
HDAC4P56524 CBR3-AS1-216ENST00000624883 564 ntTSL 3 BASIC16.69■□□□□ 0.26
HDAC4P56524 TRIM29-221ENST00000627238 510 ntTSL 5 BASIC16.69■□□□□ 0.26
HDAC4P56524 MAPKAP1-202ENST00000350766 3256 ntTSL 1 (best) BASIC16.69■□□□□ 0.26
HDAC4P56524 TANK-202ENST00000392749 2171 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
HDAC4P56524 PRSS50-201ENST00000460241 2960 ntAPPRIS P1 TSL 2 BASIC16.69■□□□□ 0.26
HDAC4P56524 TOMM40-207ENST00000592434 3415 ntAPPRIS ALT2 TSL 2 BASIC16.69■□□□□ 0.26
HDAC4P56524 NBEAL2-205ENST00000450053 8827 ntAPPRIS P1 TSL 2 BASIC16.69■□□□□ 0.26
HDAC4P56524 PMS1-212ENST00000432292 3234 ntTSL 2 BASIC16.69■□□□□ 0.26
HDAC4P56524 AC026412.1-203ENST00000507841 2338 ntTSL 1 (best) BASIC16.69■□□□□ 0.26
HDAC4P56524 PIGT-201ENST00000279035 1880 ntTSL 2 BASIC16.69■□□□□ 0.26
HDAC4P56524 AC092198.1-201ENST00000447651 2691 ntTSL 2 BASIC16.69■□□□□ 0.26
HDAC4P56524 RIMS3-201ENST00000372683 1408 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
HDAC4P56524 KRT8P37-201ENST00000451609 1420 ntBASIC16.69■□□□□ 0.26
HDAC4P56524 PPP1R18-206ENST00000615892 1448 ntTSL 1 (best) BASIC16.69■□□□□ 0.26
HDAC4P56524 TMPO-AS1-202ENST00000548760 3357 ntTSL 1 (best) BASIC16.69■□□□□ 0.26
HDAC4P56524 C8orf76-201ENST00000276704 1341 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
HDAC4P56524 LINC02138-201ENST00000378340 1326 ntTSL 2 BASIC16.69■□□□□ 0.26
HDAC4P56524 ARFGAP1-210ENST00000519273 3176 ntTSL 2 BASIC16.69■□□□□ 0.26
HDAC4P56524 RASA4-204ENST00000462172 2634 ntTSL 1 (best) BASIC16.68■□□□□ 0.26
HDAC4P56524 HMGA2-210ENST00000541363 8094 ntAPPRIS ALT1 TSL 1 (best) BASIC16.68■□□□□ 0.26
HDAC4P56524 TYSND1-201ENST00000287078 3644 ntAPPRIS P1 TSL 1 (best) BASIC16.68■□□□□ 0.26
HDAC4P56524 POLI-208ENST00000579534 6133 ntAPPRIS P1 TSL 1 (best) BASIC16.68■□□□□ 0.26
HDAC4P56524 AL035456.1-201ENST00000456064 1369 ntBASIC16.68■□□□□ 0.26
HDAC4P56524 PPP1R26-205ENST00000605286 4744 ntAPPRIS P1 TSL 3 BASIC16.68■□□□□ 0.26
HDAC4P56524 XRCC1-202ENST00000543982 1994 ntTSL 2 BASIC16.68■□□□□ 0.26
HDAC4P56524 CLSTN1-201ENST00000361311 4647 ntAPPRIS P3 TSL 1 (best) BASIC16.68■□□□□ 0.26
HDAC4P56524 KRT27-201ENST00000301656 1612 ntAPPRIS P1 TSL 1 (best) BASIC16.68■□□□□ 0.26
HDAC4P56524 AKR1B15-202ENST00000457545 1621 ntAPPRIS P1 TSL 5 BASIC16.68■□□□□ 0.26
HDAC4P56524 UPK2-201ENST00000264031 916 ntAPPRIS P1 TSL 1 (best) BASIC16.68■□□□□ 0.26
HDAC4P56524 LRRC28-202ENST00000331450 752 ntTSL 1 (best) BASIC16.68■□□□□ 0.26
HDAC4P56524 ETNK1-202ENST00000335148 1083 ntTSL 1 (best) BASIC16.68■□□□□ 0.26
HDAC4P56524 EFNA4-202ENST00000368409 1263 ntAPPRIS P3 TSL 1 (best) BASIC16.68■□□□□ 0.26
HDAC4P56524 HNRNPFP1-201ENST00000391730 1133 ntBASIC16.68■□□□□ 0.26
HDAC4P56524 C2orf76-202ENST00000409466 1150 ntAPPRIS P1 TSL 1 (best) BASIC16.68■□□□□ 0.26
HDAC4P56524 SNHG11-207ENST00000434729 1058 ntTSL 4 BASIC16.68■□□□□ 0.26
HDAC4P56524 LINC01983-203ENST00000444346 519 ntTSL 2 BASIC16.68■□□□□ 0.26
HDAC4P56524 PP7080-203ENST00000510604 859 ntTSL 1 (best) BASIC16.68■□□□□ 0.26
HDAC4P56524 TRAF3IP2-AS1-208ENST00000525151 609 ntTSL 1 (best) BASIC16.68■□□□□ 0.26
HDAC4P56524 TATDN3-212ENST00000530441 492 ntTSL 3 BASIC16.68■□□□□ 0.26
Retrieved 100 of 98,524 protein–RNA pairs in 32.8 ms