Protein–RNA interactions for Protein: P34897

SHMT2, Serine hydroxymethyltransferase, mitochondrial, humanhuman

Predictions only

Length 504 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2P34897 RPS19-202ENST00000593863 526 ntAPPRIS P1 TSL 3 BASIC15.68■□□□□ 0.1
SHMT2P34897 RN7SL828P-201ENST00000607615 303 ntBASIC15.68■□□□□ 0.1
SHMT2P34897 RTN4RL1-201ENST00000331238 3625 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
SHMT2P34897 PDE4C-202ENST00000355502 5979 ntAPPRIS P3 TSL 2 BASIC15.68■□□□□ 0.1
SHMT2P34897 ST14-201ENST00000278742 3539 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
SHMT2P34897 KIFC3-206ENST00000541240 3047 ntTSL 2 BASIC15.68■□□□□ 0.1
SHMT2P34897 NPHP4-211ENST00000622020 3004 ntTSL 5 BASIC15.68■□□□□ 0.1
SHMT2P34897 SPCS2-201ENST00000263672 2708 ntAPPRIS P2 TSL 1 (best) BASIC15.68■□□□□ 0.1
SHMT2P34897 APBB1-202ENST00000311051 2619 ntAPPRIS P3 TSL 1 (best) BASIC15.68■□□□□ 0.1
SHMT2P34897 COL4A1-204ENST00000543140 2547 ntTSL 1 (best) BASIC15.68■□□□□ 0.1
SHMT2P34897 PLPPR4-203ENST00000457765 4846 ntTSL 2 BASIC15.68■□□□□ 0.1
SHMT2P34897 SBSN-201ENST00000452271 1945 ntAPPRIS ALT2 TSL 1 (best) BASIC15.68■□□□□ 0.1
SHMT2P34897 ARPC1B-211ENST00000451682 1715 ntAPPRIS P1 TSL 5 BASIC15.68■□□□□ 0.1
SHMT2P34897 AMT-233ENST00000636522 1620 ntTSL 2 BASIC15.68■□□□□ 0.1
SHMT2P34897 TAOK2-203ENST00000416441 4780 ntTSL 1 (best) BASIC15.68■□□□□ 0.1
SHMT2P34897 TNFRSF14-AS1-202ENST00000432521 3608 ntTSL 2 BASIC15.68■□□□□ 0.1
SHMT2P34897 C12orf42-201ENST00000378113 1513 ntAPPRIS P2 TSL 5 BASIC15.68■□□□□ 0.1
SHMT2P34897 COG5-203ENST00000393603 5418 ntAPPRIS ALT2 TSL 1 (best) BASIC15.68■□□□□ 0.1
SHMT2P34897 GPR152-201ENST00000312457 1429 ntAPPRIS P1 BASIC15.68■□□□□ 0.1
SHMT2P34897 KREMEN1-203ENST00000407188 1422 ntAPPRIS ALT2 TSL 1 (best) BASIC15.68■□□□□ 0.1
SHMT2P34897 CHMP1A-202ENST00000535997 2295 ntTSL 2 BASIC15.68■□□□□ 0.1
SHMT2P34897 DDOST-206ENST00000602624 1963 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
SHMT2P34897 CMKLR1-204ENST00000550402 1893 ntAPPRIS ALT2 TSL 1 (best) BASIC15.67■□□□□ 0.1
SHMT2P34897 VIPR1-204ENST00000438259 2427 ntTSL 2 BASIC15.67■□□□□ 0.1
SHMT2P34897 ASB7-202ENST00000343276 1694 ntTSL 1 (best) BASIC15.67■□□□□ 0.1
SHMT2P34897 RASSF1-205ENST00000395126 1657 ntTSL 1 (best) BASIC15.67■□□□□ 0.1
SHMT2P34897 APBB2-204ENST00000502841 1681 ntTSL 2 BASIC15.67■□□□□ 0.1
SHMT2P34897 TSC2-207ENST00000439673 5287 ntAPPRIS ALT2 TSL 2 BASIC15.67■□□□□ 0.1
SHMT2P34897 AL603832.2-201ENST00000566195 2125 ntBASIC15.67■□□□□ 0.1
SHMT2P34897 GRIK5-204ENST00000593562 3308 ntAPPRIS P1 TSL 5 BASIC15.67■□□□□ 0.1
SHMT2P34897 ABHD10-201ENST00000273359 2590 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
SHMT2P34897 CDK18-201ENST00000360066 3141 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
SHMT2P34897 L2HGDH-202ENST00000267436 6414 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
SHMT2P34897 TUBA1C-201ENST00000301072 3001 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
SHMT2P34897 DAB2IP-205ENST00000408936 6784 ntAPPRIS ALT2 TSL 5 BASIC15.67■□□□□ 0.1
SHMT2P34897 TBC1D10A-203ENST00000403362 1833 ntAPPRIS ALT2 TSL 5 BASIC15.67■□□□□ 0.1
SHMT2P34897 SPDYC-201ENST00000377185 991 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
SHMT2P34897 IGHV3-23-201ENST00000390609 432 ntAPPRIS P1 BASIC15.67■□□□□ 0.1
SHMT2P34897 NDUFA3-204ENST00000391764 267 ntTSL 3 BASIC15.67■□□□□ 0.1
SHMT2P34897 IQCF3-201ENST00000437810 1270 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
SHMT2P34897 CALML4-206ENST00000467889 987 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
SHMT2P34897 SATB1-217ENST00000493952 626 ntTSL 3 BASIC15.67■□□□□ 0.1
SHMT2P34897 DUX4L27-201ENST00000554796 1261 ntBASIC15.67■□□□□ 0.1
SHMT2P34897 AC010336.3-201ENST00000597156 667 ntTSL 2 BASIC15.67■□□□□ 0.1
SHMT2P34897 AC073592.8-201ENST00000624126 511 ntBASIC15.67■□□□□ 0.1
SHMT2P34897 EPS8-201ENST00000281172 4061 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
SHMT2P34897 AKR1B15-202ENST00000457545 1621 ntAPPRIS P1 TSL 5 BASIC15.67■□□□□ 0.1
SHMT2P34897 RIC8B-213ENST00000638198 1611 ntTSL 5 BASIC15.67■□□□□ 0.1
SHMT2P34897 AC010491.1-201ENST00000563101 2797 ntBASIC15.67■□□□□ 0.1
SHMT2P34897 C14orf93-202ENST00000341470 2221 ntTSL 1 (best) BASIC15.67■□□□□ 0.1
SHMT2P34897 ICMT-201ENST00000343813 4771 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
SHMT2P34897 SNAPC4-201ENST00000298532 5010 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
SHMT2P34897 CFLAR-214ENST00000443227 1679 ntTSL 2 BASIC15.67■□□□□ 0.1
SHMT2P34897 EPHA8-201ENST00000166244 4943 ntAPPRIS P1 TSL 2 BASIC15.67■□□□□ 0.1
SHMT2P34897 EGLN3-201ENST00000250457 2709 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
SHMT2P34897 KITLG-202ENST00000347404 1948 ntTSL 1 (best) BASIC15.66■□□□□ 0.1
SHMT2P34897 AC012313.3-202ENST00000599109 3322 ntTSL 5 BASIC15.66■□□□□ 0.1
SHMT2P34897 SNAP47-213ENST00000617596 1905 ntAPPRIS ALT2 TSL 1 (best) BASIC15.66■□□□□ 0.1
SHMT2P34897 ATP6V1B2-201ENST00000276390 2875 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
SHMT2P34897 ARSE-206ENST00000545496 2506 ntTSL 2 BASIC15.66■□□□□ 0.1
SHMT2P34897 CETN4P-206ENST00000642099 2168 ntBASIC15.66■□□□□ 0.1
SHMT2P34897 TNRC18-202ENST00000399434 1459 ntTSL 2 BASIC15.66■□□□□ 0.1
SHMT2P34897 AC069281.2-201ENST00000485071 4401 ntTSL 2 BASIC15.66■□□□□ 0.1
SHMT2P34897 LOXL3-203ENST00000409249 2431 ntTSL 5 BASIC15.66■□□□□ 0.1
SHMT2P34897 NECAP2-201ENST00000337132 2070 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
SHMT2P34897 ZNF180-202ENST00000391956 3049 ntAPPRIS ALT2 TSL 2 BASIC15.66■□□□□ 0.1
SHMT2P34897 QRICH1-202ENST00000395443 3549 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
SHMT2P34897 PELI2-201ENST00000267460 5909 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
SHMT2P34897 ASIC1-202ENST00000447966 3778 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
SHMT2P34897 BDKRB2-201ENST00000539359 1600 ntTSL 2 BASIC15.66■□□□□ 0.1
SHMT2P34897 GLIPR2-205ENST00000619700 1645 ntTSL 3 BASIC15.66■□□□□ 0.1
SHMT2P34897 FER1L4-210ENST00000615531 5998 ntBASIC15.66■□□□□ 0.1
SHMT2P34897 INPP4A-202ENST00000409016 9996 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
SHMT2P34897 C2orf48-201ENST00000381786 1897 ntTSL 2 BASIC15.66■□□□□ 0.1
SHMT2P34897 HHATL-205ENST00000441594 1865 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
SHMT2P34897 MRPL43-201ENST00000299179 747 ntTSL 1 (best) BASIC15.66■□□□□ 0.1
SHMT2P34897 PAM16-201ENST00000318059 587 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
SHMT2P34897 NECTIN1-202ENST00000340882 1059 ntTSL 1 (best) BASIC15.66■□□□□ 0.1
SHMT2P34897 SERTAD1-201ENST00000357949 2114 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
SHMT2P34897 C6orf99-202ENST00000367073 769 ntTSL 5 BASIC15.66■□□□□ 0.1
SHMT2P34897 ASMT-201ENST00000381229 1087 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
SHMT2P34897 RBM39-205ENST00000397370 612 ntTSL 2 BASIC15.66■□□□□ 0.1
SHMT2P34897 PABPN1L-201ENST00000411789 873 ntTSL 1 (best) BASIC15.66■□□□□ 0.1
SHMT2P34897 TREML5P-201ENST00000421694 576 ntBASIC15.66■□□□□ 0.1
SHMT2P34897 AC124057.1-201ENST00000433035 404 ntTSL 5 BASIC15.66■□□□□ 0.1
SHMT2P34897 HLA-V-204ENST00000476601 1289 ntBASIC15.66■□□□□ 0.1
SHMT2P34897 IGHV3-42-201ENST00000520410 361 ntBASIC15.66■□□□□ 0.1
SHMT2P34897 BANF1P1-201ENST00000553684 263 ntBASIC15.66■□□□□ 0.1
SHMT2P34897 NDUFA4L2-202ENST00000554503 1177 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
SHMT2P34897 COMMD4-207ENST00000562789 746 ntTSL 2 BASIC15.66■□□□□ 0.1
SHMT2P34897 ERCC1-212ENST00000591636 836 ntTSL 2 BASIC15.66■□□□□ 0.1
SHMT2P34897 AC005523.1-201ENST00000598782 418 ntTSL 5 BASIC15.66■□□□□ 0.1
SHMT2P34897 ZNF550-208ENST00000601415 515 ntTSL 4 BASIC15.66■□□□□ 0.1
SHMT2P34897 GPER1-207ENST00000619052 571 ntTSL 2 BASIC15.66■□□□□ 0.1
SHMT2P34897 ASTN2-201ENST00000288520 2356 ntTSL 1 (best) BASIC15.66■□□□□ 0.1
SHMT2P34897 MANBAL-204ENST00000397151 1503 ntAPPRIS P1 TSL 3 BASIC15.66■□□□□ 0.1
SHMT2P34897 MANBAL-205ENST00000397152 1539 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
SHMT2P34897 ZMYND12-201ENST00000372565 1775 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
SHMT2P34897 RNPS1-223ENST00000568631 1792 ntAPPRIS P1 TSL 5 BASIC15.66■□□□□ 0.1
SHMT2P34897 CNTLN-202ENST00000380647 5576 ntAPPRIS P3 TSL 1 (best) BASIC15.66■□□□□ 0.1
Retrieved 100 of 98,524 protein–RNA pairs in 38.8 ms