Protein–RNA interactions for Protein: P02649

APOE, Apolipoprotein E, humanhuman

Predictions only

Length 317 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
APOEP02649 CDC25C-207ENST00000513970 1968 ntAPPRIS P1 TSL 2 BASIC16.78■□□□□ 0.28
APOEP02649 CD1E-212ENST00000368167 1458 ntAPPRIS P4 TSL 1 (best) BASIC16.78■□□□□ 0.28
APOEP02649 TNRC18-202ENST00000399434 1459 ntTSL 2 BASIC16.78■□□□□ 0.28
APOEP02649 CTCF-201ENST00000264010 3939 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
APOEP02649 CACFD1-201ENST00000291722 2688 ntTSL 2 BASIC16.78■□□□□ 0.28
APOEP02649 CYP21A2-221ENST00000418967 2182 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
APOEP02649 CETN4P-206ENST00000642099 2168 ntBASIC16.78■□□□□ 0.28
APOEP02649 NSMF-205ENST00000371474 3571 ntAPPRIS ALT1 TSL 1 (best) BASIC16.78■□□□□ 0.28
APOEP02649 NSMF-208ENST00000437259 3577 ntAPPRIS ALT1 TSL 5 BASIC16.78■□□□□ 0.28
APOEP02649 KREMEN1-203ENST00000407188 1422 ntAPPRIS ALT2 TSL 1 (best) BASIC16.78■□□□□ 0.28
APOEP02649 MPL-202ENST00000413998 1887 ntAPPRIS ALT2 TSL 1 (best) BASIC16.78■□□□□ 0.28
APOEP02649 CRY1-201ENST00000008527 3267 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
APOEP02649 DYRK3-201ENST00000367106 2329 ntTSL 1 (best) BASIC16.78■□□□□ 0.28
APOEP02649 AC097376.2-201ENST00000608661 2510 ntTSL 5 BASIC16.77■□□□□ 0.28
APOEP02649 IER2-203ENST00000588173 2934 ntAPPRIS P1 BASIC16.77■□□□□ 0.28
APOEP02649 ZMYND12-201ENST00000372565 1775 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.28
APOEP02649 RNPS1-223ENST00000568631 1792 ntAPPRIS P1 TSL 5 BASIC16.77■□□□□ 0.28
APOEP02649 CCDC110-201ENST00000307588 2898 ntAPPRIS P3 TSL 1 (best) BASIC16.77■□□□□ 0.28
APOEP02649 ZNF671-201ENST00000317398 2431 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.28
APOEP02649 LRRC57-204ENST00000563454 2407 ntAPPRIS P1 TSL 2 BASIC16.77■□□□□ 0.28
APOEP02649 RALGAPA1-203ENST00000389698 7864 ntTSL 1 (best) BASIC16.77■□□□□ 0.28
APOEP02649 MANBAL-204ENST00000397151 1503 ntAPPRIS P1 TSL 3 BASIC16.77■□□□□ 0.28
APOEP02649 MANBAL-205ENST00000397152 1539 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.28
APOEP02649 SLC34A2-202ENST00000503434 2174 ntAPPRIS ALT2 TSL 1 (best) BASIC16.77■□□□□ 0.28
APOEP02649 TP53INP1-201ENST00000342697 5638 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.28
APOEP02649 NECTIN1-202ENST00000340882 1059 ntTSL 1 (best) BASIC16.77■□□□□ 0.28
APOEP02649 POLR3GL-202ENST00000369314 1165 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.28
APOEP02649 HFE-208ENST00000397022 1280 ntTSL 1 (best) BASIC16.77■□□□□ 0.28
APOEP02649 TREML5P-201ENST00000421694 576 ntBASIC16.77■□□□□ 0.28
APOEP02649 XXYLT1-204ENST00000429994 865 ntTSL 3 BASIC16.77■□□□□ 0.28
APOEP02649 AC124057.1-201ENST00000433035 404 ntTSL 5 BASIC16.77■□□□□ 0.28
APOEP02649 HFE-214ENST00000488199 781 ntTSL 1 (best) BASIC16.77■□□□□ 0.28
APOEP02649 SATB1-217ENST00000493952 626 ntTSL 3 BASIC16.77■□□□□ 0.28
APOEP02649 BANF1P1-201ENST00000553684 263 ntBASIC16.77■□□□□ 0.28
APOEP02649 ERCC1-212ENST00000591636 836 ntTSL 2 BASIC16.77■□□□□ 0.28
APOEP02649 AL589739.1-201ENST00000607720 493 ntBASIC16.77■□□□□ 0.28
APOEP02649 AC073592.8-201ENST00000624126 511 ntBASIC16.77■□□□□ 0.28
APOEP02649 PDLIM1-201ENST00000329399 1452 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.28
APOEP02649 ANKRD2-203ENST00000370655 1451 ntTSL 1 (best) BASIC16.77■□□□□ 0.28
APOEP02649 IRGQ-201ENST00000422989 9685 ntAPPRIS P1 TSL 5 BASIC16.77■□□□□ 0.28
APOEP02649 MVB12B-201ENST00000361171 4819 ntAPPRIS P1 TSL 2 BASIC16.77■□□□□ 0.28
APOEP02649 KIFC1-211ENST00000428849 2706 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.28
APOEP02649 LRRC20-206ENST00000395011 2903 ntTSL 4 BASIC16.77■□□□□ 0.27
APOEP02649 MEIS3-210ENST00000561096 1883 ntAPPRIS ALT2 TSL 2 BASIC16.77■□□□□ 0.27
APOEP02649 TACR3-201ENST00000304883 5190 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.27
APOEP02649 ASAH1-223ENST00000636171 2283 ntTSL 5 BASIC16.77■□□□□ 0.27
APOEP02649 MCF2L2-208ENST00000473233 4748 ntAPPRIS ALT2 TSL 5 BASIC16.77■□□□□ 0.27
APOEP02649 SLC29A1-205ENST00000371740 2219 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.27
APOEP02649 GMPPB-201ENST00000308375 3217 ntTSL 2 BASIC16.77■□□□□ 0.27
APOEP02649 ADGRA1-AS1-201ENST00000366099 3236 ntBASIC16.77■□□□□ 0.27
APOEP02649 APLN-201ENST00000429967 3205 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.27
APOEP02649 RB1CC1-202ENST00000435644 6614 ntAPPRIS ALT1 TSL 1 (best) BASIC16.77■□□□□ 0.27
APOEP02649 FGF4-201ENST00000168712 3233 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
APOEP02649 GLYCTK-207ENST00000477382 1304 ntTSL 1 (best) BASIC16.76■□□□□ 0.27
APOEP02649 C11orf24-201ENST00000304271 2063 ntAPPRIS P3 TSL 1 (best) BASIC16.76■□□□□ 0.27
APOEP02649 SNCAIP-202ENST00000261368 3745 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
APOEP02649 GMIP-204ENST00000587238 2987 ntTSL 1 (best) BASIC16.76■□□□□ 0.27
APOEP02649 DNAJC7-201ENST00000316603 1468 ntTSL 1 (best) BASIC16.76■□□□□ 0.27
APOEP02649 NTNG1-202ENST00000370065 1485 ntTSL 5 BASIC16.76■□□□□ 0.27
APOEP02649 IQCF5-AS1-201ENST00000440723 2000 ntTSL 2 BASIC16.76■□□□□ 0.27
APOEP02649 EXT2-210ENST00000533608 3136 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
APOEP02649 UCKL1-201ENST00000354216 1837 ntTSL 1 (best) BASIC16.76■□□□□ 0.27
APOEP02649 VMA21-202ENST00000370361 693 ntTSL 5 BASIC16.76■□□□□ 0.27
APOEP02649 HSD17B10-203ENST00000375304 916 ntTSL 1 (best) BASIC16.76■□□□□ 0.27
APOEP02649 ASMT-201ENST00000381229 1087 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
APOEP02649 CSHL1-204ENST00000392824 823 ntAPPRIS ALT1 TSL 1 (best) BASIC16.76■□□□□ 0.27
APOEP02649 RBM39-205ENST00000397370 612 ntTSL 2 BASIC16.76■□□□□ 0.27
APOEP02649 RAB30-AS1-202ENST00000526795 567 ntTSL 5 BASIC16.76■□□□□ 0.27
APOEP02649 TMEM120B-206ENST00000540377 962 ntTSL 3 BASIC16.76■□□□□ 0.27
APOEP02649 AC005523.1-201ENST00000598782 418 ntTSL 5 BASIC16.76■□□□□ 0.27
APOEP02649 SLC29A1-209ENST00000427851 2171 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
APOEP02649 RUSC1-203ENST00000368349 1968 ntAPPRIS P3 TSL 1 (best) BASIC16.76■□□□□ 0.27
APOEP02649 TMTC2-203ENST00000548305 2682 ntTSL 1 (best) BASIC16.76■□□□□ 0.27
APOEP02649 CXorf38-201ENST00000327877 2118 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
APOEP02649 APBB1-202ENST00000311051 2619 ntAPPRIS P3 TSL 1 (best) BASIC16.76■□□□□ 0.27
APOEP02649 TCP10-201ENST00000366827 2250 ntAPPRIS ALT2 TSL 5 BASIC16.76■□□□□ 0.27
APOEP02649 PTPRN2-201ENST00000389413 4723 ntTSL 1 (best) BASIC16.76■□□□□ 0.27
APOEP02649 ICA1L-201ENST00000358299 3457 ntAPPRIS P1 TSL 2 BASIC16.76■□□□□ 0.27
APOEP02649 AC010491.1-201ENST00000563101 2797 ntBASIC16.76■□□□□ 0.27
APOEP02649 CDC14A-202ENST00000361544 2417 ntAPPRIS P4 TSL 1 (best) BASIC16.76■□□□□ 0.27
APOEP02649 IL1RN-202ENST00000354115 1747 ntTSL 1 (best) BASIC16.76■□□□□ 0.27
APOEP02649 ZFPL1-201ENST00000294258 1371 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
APOEP02649 FO538757.1-201ENST00000623083 1397 ntBASIC16.76■□□□□ 0.27
APOEP02649 GBA2-202ENST00000378094 3757 ntAPPRIS ALT2 TSL 1 (best) BASIC16.76■□□□□ 0.27
APOEP02649 TGFBR2-201ENST00000295754 4621 ntAPPRIS P3 TSL 1 (best) BASIC16.76■□□□□ 0.27
APOEP02649 MANSC1-201ENST00000396349 2220 ntTSL 2 BASIC16.76■□□□□ 0.27
APOEP02649 SOX30-202ENST00000311371 2716 ntAPPRIS ALT2 TSL 1 (best) BASIC16.76■□□□□ 0.27
APOEP02649 EPS8-201ENST00000281172 4061 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
APOEP02649 ADAM9-206ENST00000481513 2387 ntTSL 2 BASIC16.75■□□□□ 0.27
APOEP02649 CNPY4-201ENST00000262932 1502 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
APOEP02649 POR-218ENST00000461988 2522 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
APOEP02649 PHF8-203ENST00000338946 4651 ntAPPRIS ALT2 TSL 2 BASIC16.75■□□□□ 0.27
APOEP02649 RASA4-204ENST00000462172 2634 ntTSL 1 (best) BASIC16.75■□□□□ 0.27
APOEP02649 KRT73-201ENST00000305748 2284 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
APOEP02649 MIR155HG-201ENST00000456917 1600 ntTSL 5 BASIC16.75■□□□□ 0.27
APOEP02649 AKT1-214ENST00000555528 3066 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
APOEP02649 MFSD1-203ENST00000415822 2423 ntTSL 1 (best) BASIC16.75■□□□□ 0.27
APOEP02649 KCTD7-206ENST00000639828 5951 ntAPPRIS P3 TSL 2 BASIC16.75■□□□□ 0.27
APOEP02649 TRAF3-204ENST00000539721 1786 ntTSL 2 BASIC16.75■□□□□ 0.27
APOEP02649 LATS1-202ENST00000392273 2567 ntTSL 1 (best) BASIC16.75■□□□□ 0.27
Retrieved 100 of 98,524 protein–RNA pairs in 53.1 ms