Protein–RNA interactions for Protein: H3BMG3

SMKR1, Small lysine-rich protein 1, humanhuman

Predictions only

Length 65 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SMKR1H3BMG3 DUSP27-201ENST00000271385 3597 ntAPPRIS P1 TSL 1 (best) BASIC11.75□□□□□ -0.53
SMKR1H3BMG3 AC009690.1-201ENST00000379915 4374 ntAPPRIS P1 TSL 2 BASIC11.75□□□□□ -0.53
SMKR1H3BMG3 ZNF219-203ENST00000451119 2918 ntAPPRIS P1 TSL 5 BASIC11.75□□□□□ -0.53
SMKR1H3BMG3 RIOX2-202ENST00000360258 2232 ntAPPRIS P3 TSL 1 (best) BASIC11.75□□□□□ -0.53
SMKR1H3BMG3 CAB39-201ENST00000258418 3826 ntAPPRIS P1 TSL 1 (best) BASIC11.75□□□□□ -0.53
SMKR1H3BMG3 SLC6A20-202ENST00000358525 5423 ntAPPRIS P1 TSL 1 (best) BASIC11.75□□□□□ -0.53
SMKR1H3BMG3 POLL-206ENST00000370172 2308 ntTSL 2 BASIC11.75□□□□□ -0.53
SMKR1H3BMG3 RHCE-201ENST00000294413 1591 ntAPPRIS P2 TSL 1 (best) BASIC11.75□□□□□ -0.53
SMKR1H3BMG3 AXL-201ENST00000301178 4737 ntAPPRIS P4 TSL 1 (best) BASIC11.75□□□□□ -0.53
SMKR1H3BMG3 HOXA-AS2-202ENST00000517635 2455 ntTSL 2 BASIC11.75□□□□□ -0.53
SMKR1H3BMG3 PHF14-201ENST00000403050 4276 ntTSL 1 (best) BASIC11.74□□□□□ -0.53
SMKR1H3BMG3 RECQL5-202ENST00000340830 1749 ntTSL 1 (best) BASIC11.74□□□□□ -0.53
SMKR1H3BMG3 CLDN6-202ENST00000396925 1739 ntAPPRIS P1 TSL 5 BASIC11.74□□□□□ -0.53
SMKR1H3BMG3 DCUN1D2-201ENST00000332592 2626 ntTSL 2 BASIC11.74□□□□□ -0.53
SMKR1H3BMG3 KAT7-213ENST00000510819 1769 ntTSL 2 BASIC11.74□□□□□ -0.53
SMKR1H3BMG3 STIP1-207ENST00000538945 1900 ntTSL 2 BASIC11.74□□□□□ -0.53
SMKR1H3BMG3 TIE1-201ENST00000372476 3882 ntAPPRIS P1 TSL 1 (best) BASIC11.74□□□□□ -0.53
SMKR1H3BMG3 ARC-201ENST00000356613 2948 ntAPPRIS P1 TSL 1 (best) BASIC11.74□□□□□ -0.53
SMKR1H3BMG3 NCKIPSD-204ENST00000416649 2925 ntAPPRIS ALT2 TSL 1 (best) BASIC11.74□□□□□ -0.53
SMKR1H3BMG3 AZGP1-202ENST00000411734 2027 ntTSL 1 (best) BASIC11.74□□□□□ -0.53
SMKR1H3BMG3 FGFR1-202ENST00000335922 4157 ntTSL 1 (best) BASIC11.74□□□□□ -0.53
SMKR1H3BMG3 CIAPIN1-201ENST00000394391 2182 ntAPPRIS P1 TSL 1 (best) BASIC11.74□□□□□ -0.53
SMKR1H3BMG3 CYP21A2-221ENST00000418967 2182 ntAPPRIS P1 TSL 1 (best) BASIC11.74□□□□□ -0.53
SMKR1H3BMG3 PAPOLA-201ENST00000216277 4519 ntAPPRIS P1 TSL 1 (best) BASIC11.74□□□□□ -0.53
SMKR1H3BMG3 TPD52L2-202ENST00000346249 2297 ntAPPRIS ALT1 TSL 1 (best) BASIC11.74□□□□□ -0.53
SMKR1H3BMG3 NSUN5-203ENST00000428206 2269 ntAPPRIS ALT2 TSL 2 BASIC11.74□□□□□ -0.53
SMKR1H3BMG3 AC013726.1-201ENST00000563747 2285 ntBASIC11.74□□□□□ -0.53
SMKR1H3BMG3 NKIRAS1-201ENST00000388759 2335 ntAPPRIS P2 TSL 3 BASIC11.74□□□□□ -0.53
SMKR1H3BMG3 PI4K2B-201ENST00000264864 3540 ntAPPRIS P1 TSL 1 (best) BASIC11.74□□□□□ -0.53
SMKR1H3BMG3 MTRF1L-202ENST00000367231 3539 ntTSL 1 (best) BASIC11.74□□□□□ -0.53
SMKR1H3BMG3 PHLDB2-203ENST00000412622 5996 ntTSL 5 BASIC11.74□□□□□ -0.53
SMKR1H3BMG3 GPRASP1-205ENST00000537097 5980 ntAPPRIS P1 TSL 2 BASIC11.74□□□□□ -0.53
SMKR1H3BMG3 PTS-201ENST00000280362 935 ntAPPRIS P1 TSL 1 (best) BASIC11.74□□□□□ -0.53
SMKR1H3BMG3 YIF1B-203ENST00000339413 1225 ntAPPRIS P1 TSL 1 (best) BASIC11.74□□□□□ -0.53
SMKR1H3BMG3 MPIG6B-202ENST00000375805 668 ntAPPRIS ALT2 TSL 1 (best) BASIC11.74□□□□□ -0.53
SMKR1H3BMG3 HAUS4P1-201ENST00000406739 1145 ntBASIC11.74□□□□□ -0.53
SMKR1H3BMG3 NAT6-202ENST00000417393 1163 ntAPPRIS ALT2 TSL 1 (best) BASIC11.74□□□□□ -0.53
SMKR1H3BMG3 ABCD1P5-201ENST00000445663 754 ntBASIC11.74□□□□□ -0.53
SMKR1H3BMG3 CDV3-207ENST00000508481 661 ntTSL 3 BASIC11.74□□□□□ -0.53
SMKR1H3BMG3 AP001453.1-201ENST00000534988 923 ntTSL 3 BASIC11.74□□□□□ -0.53
SMKR1H3BMG3 BRICD5-203ENST00000566018 555 ntTSL 2 BASIC11.74□□□□□ -0.53
SMKR1H3BMG3 PSMD8-202ENST00000585598 541 ntTSL 5 BASIC11.74□□□□□ -0.53
SMKR1H3BMG3 MED16-213ENST00000616387 1078 ntTSL 1 (best) BASIC11.74□□□□□ -0.53
SMKR1H3BMG3 AC114341.1-201ENST00000618070 349 ntBASIC11.74□□□□□ -0.53
SMKR1H3BMG3 KLHDC7A-201ENST00000400664 5145 ntAPPRIS P1 BASIC11.74□□□□□ -0.53
SMKR1H3BMG3 MGRN1-202ENST00000399577 6425 ntAPPRIS ALT2 TSL 1 (best) BASIC11.74□□□□□ -0.53
SMKR1H3BMG3 UHRF1BP1L-201ENST00000279907 5168 ntAPPRIS P4 TSL 1 (best) BASIC11.74□□□□□ -0.53
SMKR1H3BMG3 CUTC-202ENST00000370476 1346 ntAPPRIS P1 TSL 1 (best) BASIC11.74□□□□□ -0.53
SMKR1H3BMG3 KRT18P1-202ENST00000452408 1331 ntBASIC11.74□□□□□ -0.53
SMKR1H3BMG3 LINC00960-201ENST00000463183 1333 ntTSL 1 (best) BASIC11.74□□□□□ -0.53
SMKR1H3BMG3 ABHD14B-204ENST00000461108 1397 ntTSL 2 BASIC11.74□□□□□ -0.53
SMKR1H3BMG3 TMEM92-201ENST00000300433 2767 ntAPPRIS P1 TSL 1 (best) BASIC11.74□□□□□ -0.53
SMKR1H3BMG3 MPPED2-202ENST00000448418 5591 ntTSL 1 (best) BASIC11.74□□□□□ -0.53
SMKR1H3BMG3 TCP11L1-201ENST00000334274 2817 ntAPPRIS P1 TSL 1 (best) BASIC11.74□□□□□ -0.53
SMKR1H3BMG3 RAC2-201ENST00000249071 1482 ntAPPRIS P2 TSL 1 (best) BASIC11.74□□□□□ -0.53
SMKR1H3BMG3 IL3RA-202ENST00000381469 1476 ntTSL 5 BASIC11.74□□□□□ -0.53
SMKR1H3BMG3 CHID1-203ENST00000436108 1477 ntAPPRIS P1 TSL 1 (best) BASIC11.74□□□□□ -0.53
SMKR1H3BMG3 AL353732.1-201ENST00000569618 1459 ntBASIC11.74□□□□□ -0.53
SMKR1H3BMG3 STAM-202ENST00000377524 2972 ntAPPRIS P1 TSL 1 (best) BASIC11.74□□□□□ -0.53
SMKR1H3BMG3 PIP4K2C-207ENST00000550465 1532 ntTSL 2 BASIC11.74□□□□□ -0.53
SMKR1H3BMG3 TJP3-207ENST00000589378 3068 ntAPPRIS ALT2 TSL 2 BASIC11.74□□□□□ -0.53
SMKR1H3BMG3 ZDHHC3-201ENST00000296127 3101 ntTSL 1 (best) BASIC11.74□□□□□ -0.53
SMKR1H3BMG3 MAPK4-201ENST00000400384 4770 ntAPPRIS P1 TSL 1 (best) BASIC11.74□□□□□ -0.53
SMKR1H3BMG3 KCNC3-202ENST00000474951 3347 ntTSL 2 BASIC11.74□□□□□ -0.53
SMKR1H3BMG3 CUX2-201ENST00000261726 6844 ntAPPRIS P1 TSL 1 (best) BASIC11.74□□□□□ -0.53
SMKR1H3BMG3 APH1A-203ENST00000369109 1713 ntAPPRIS P4 TSL 1 (best) BASIC11.74□□□□□ -0.53
SMKR1H3BMG3 PDPK1-202ENST00000342085 7241 ntAPPRIS P1 TSL 1 (best) BASIC11.74□□□□□ -0.53
SMKR1H3BMG3 CPSF7-202ENST00000394888 3650 ntAPPRIS P4 TSL 2 BASIC11.74□□□□□ -0.53
SMKR1H3BMG3 SPIRE1-201ENST00000309836 1877 ntTSL 2 BASIC11.74□□□□□ -0.53
SMKR1H3BMG3 U82695.1-201ENST00000635752 1889 ntBASIC11.74□□□□□ -0.53
SMKR1H3BMG3 PTPRN-201ENST00000295718 3784 ntAPPRIS P3 TSL 1 (best) BASIC11.74□□□□□ -0.53
SMKR1H3BMG3 DOK5-201ENST00000262593 1963 ntAPPRIS P1 TSL 1 (best) BASIC11.74□□□□□ -0.53
SMKR1H3BMG3 IL9R-202ENST00000369423 2032 ntAPPRIS ALT2 TSL 1 (best) BASIC11.74□□□□□ -0.53
SMKR1H3BMG3 PCDH17-201ENST00000377918 8232 ntAPPRIS P1 TSL 1 (best) BASIC11.74□□□□□ -0.53
SMKR1H3BMG3 GPR17-201ENST00000272644 2062 ntAPPRIS P1 TSL 1 (best) BASIC11.74□□□□□ -0.53
SMKR1H3BMG3 TRAF1-201ENST00000373887 6324 ntAPPRIS P1 TSL 1 (best) BASIC11.74□□□□□ -0.53
SMKR1H3BMG3 CALD1-222ENST00000495522 2199 ntTSL 5 BASIC11.74□□□□□ -0.53
SMKR1H3BMG3 TMEM132E-203ENST00000631683 4379 ntAPPRIS P2 TSL 5 BASIC11.74□□□□□ -0.53
SMKR1H3BMG3 KNDC1-201ENST00000304613 6793 ntAPPRIS P1 TSL 1 (best) BASIC11.74□□□□□ -0.53
SMKR1H3BMG3 SFMBT1-201ENST00000394752 4548 ntAPPRIS P1 TSL 1 (best) BASIC11.74□□□□□ -0.53
SMKR1H3BMG3 LINC00839-202ENST00000429940 2253 ntTSL 2 BASIC11.74□□□□□ -0.53
SMKR1H3BMG3 AC009090.5-201ENST00000624886 2285 ntBASIC11.74□□□□□ -0.53
SMKR1H3BMG3 ODF2-202ENST00000372791 2375 ntAPPRIS P3 TSL 1 (best) BASIC11.74□□□□□ -0.53
SMKR1H3BMG3 KDM3A-203ENST00000409556 4928 ntAPPRIS P1 TSL 5 BASIC11.74□□□□□ -0.53
SMKR1H3BMG3 SPHK2-202ENST00000340932 2492 ntTSL 5 BASIC11.74□□□□□ -0.53
SMKR1H3BMG3 AL390038.1-201ENST00000419814 2481 ntTSL 1 (best) BASIC11.74□□□□□ -0.53
SMKR1H3BMG3 AL359258.1-201ENST00000438965 2481 ntTSL 1 (best) BASIC11.74□□□□□ -0.53
SMKR1H3BMG3 ASIC4-201ENST00000347842 2684 ntAPPRIS P2 TSL 1 (best) BASIC11.73□□□□□ -0.53
SMKR1H3BMG3 GORASP2-201ENST00000234160 3173 ntAPPRIS P1 TSL 1 (best) BASIC11.73□□□□□ -0.53
SMKR1H3BMG3 KHNYN-201ENST00000251343 6725 ntAPPRIS P1 TSL 1 (best) BASIC11.73□□□□□ -0.53
SMKR1H3BMG3 ZNF365-207ENST00000410046 3379 ntTSL 2 BASIC11.73□□□□□ -0.53
SMKR1H3BMG3 GRIK5-201ENST00000262895 3493 ntAPPRIS P1 TSL 1 (best) BASIC11.73□□□□□ -0.53
SMKR1H3BMG3 ZNF664-202ENST00000392404 4262 ntAPPRIS P1 TSL 1 (best) BASIC11.73□□□□□ -0.53
SMKR1H3BMG3 PML-201ENST00000268058 4508 ntAPPRIS P4 TSL 1 (best) BASIC11.73□□□□□ -0.53
SMKR1H3BMG3 AC126335.2-201ENST00000623362 4637 ntBASIC11.73□□□□□ -0.53
SMKR1H3BMG3 METTL25-201ENST00000248306 2093 ntAPPRIS P1 TSL 1 (best) BASIC11.73□□□□□ -0.53
SMKR1H3BMG3 KCNN2-201ENST00000264773 2512 ntAPPRIS P2 TSL 1 (best) BASIC11.73□□□□□ -0.53
SMKR1H3BMG3 PKN2-201ENST00000316005 2632 ntTSL 5 BASIC11.73□□□□□ -0.53
SMKR1H3BMG3 REEP4-202ENST00000334530 1476 ntTSL 1 (best) BASIC11.73□□□□□ -0.53
SMKR1H3BMG3 EIF2B3-201ENST00000360403 1659 ntAPPRIS P1 TSL 1 (best) BASIC11.73□□□□□ -0.53
Retrieved 100 of 98,524 protein–RNA pairs in 45.8 ms