Protein–RNA interactions for Protein: Q9NY93

DDX56, Probable ATP-dependent RNA helicase DDX56, humanhuman

Known RBP Predictions only

Length 547 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
DDX56Q9NY93 BDH1-207ENST00000441275 1605 ntTSL 5 BASIC24.44■■□□□ 1.5
DDX56Q9NY93 LYPD6B-204ENST00000409876 1248 ntAPPRIS ALT2 TSL 1 (best) BASIC24.44■■□□□ 1.5
DDX56Q9NY93 AL592293.1-201ENST00000502889 1188 ntBASIC24.44■■□□□ 1.5
DDX56Q9NY93 FAM159A-204ENST00000517870 748 ntAPPRIS P1 TSL 1 (best) BASIC24.44■■□□□ 1.5
DDX56Q9NY93 NKX2-5-204ENST00000521848 1027 ntTSL 2 BASIC24.44■■□□□ 1.5
DDX56Q9NY93 AC018755.3-202ENST00000596210 929 ntBASIC24.44■■□□□ 1.5
DDX56Q9NY93 UBE2E3-213ENST00000602959 909 ntAPPRIS P1 TSL 5 BASIC24.44■■□□□ 1.5
DDX56Q9NY93 SAP25-204ENST00000622764 1031 ntAPPRIS ALT2 TSL 5 BASIC24.44■■□□□ 1.5
DDX56Q9NY93 TMEM51-205ENST00000434578 1861 ntTSL 1 (best) BASIC24.44■■□□□ 1.5
DDX56Q9NY93 RAB11FIP1-203ENST00000522727 1866 ntTSL 1 (best) BASIC24.44■■□□□ 1.5
DDX56Q9NY93 GOLGA7-201ENST00000357743 2027 ntAPPRIS P1 TSL 1 (best) BASIC24.43■■□□□ 1.5
DDX56Q9NY93 TXNRD2-201ENST00000334363 1893 ntTSL 1 (best) BASIC24.43■■□□□ 1.5
DDX56Q9NY93 ALDH16A1-203ENST00000540132 2174 ntTSL 2 BASIC24.42■■□□□ 1.5
DDX56Q9NY93 KCNMA1-283ENST00000640523 5425 ntAPPRIS ALT2 TSL 5 BASIC24.42■■□□□ 1.5
DDX56Q9NY93 RILPL1-205ENST00000636882 2258 ntTSL 5 BASIC24.41■■□□□ 1.5
DDX56Q9NY93 ESR2-202ENST00000341099 2060 ntAPPRIS P1 TSL 1 (best) BASIC24.41■■□□□ 1.5
DDX56Q9NY93 BTBD2-201ENST00000255608 2649 ntAPPRIS P1 TSL 1 (best) BASIC24.41■■□□□ 1.5
DDX56Q9NY93 DOK3-205ENST00000501403 1872 ntAPPRIS P1 TSL 5 BASIC24.41■■□□□ 1.5
DDX56Q9NY93 RARRES2P2-201ENST00000394842 485 ntBASIC24.41■■□□□ 1.5
DDX56Q9NY93 RPS2P7-201ENST00000447334 885 ntBASIC24.41■■□□□ 1.5
DDX56Q9NY93 PTPRF-216ENST00000617451 1129 ntTSL 5 BASIC24.41■■□□□ 1.5
DDX56Q9NY93 ARMC10-208ENST00000441711 2524 ntAPPRIS P1 TSL 1 (best) BASIC24.41■■□□□ 1.5
DDX56Q9NY93 RARA-AS1-201ENST00000581080 1790 ntTSL 1 (best) BASIC24.41■■□□□ 1.5
DDX56Q9NY93 ATG16L2-205ENST00000534905 1614 ntTSL 1 (best) BASIC24.4■■□□□ 1.5
DDX56Q9NY93 ARMC10-204ENST00000425331 2443 ntTSL 2 BASIC24.4■■□□□ 1.5
DDX56Q9NY93 TMED2-201ENST00000262225 2560 ntAPPRIS P1 TSL 1 (best) BASIC24.4■■□□□ 1.5
DDX56Q9NY93 AKT1-203ENST00000407796 2710 ntAPPRIS P1 TSL 1 (best) BASIC24.4■■□□□ 1.5
DDX56Q9NY93 TSPAN4-203ENST00000397397 1423 ntAPPRIS P1 TSL 1 (best) BASIC24.4■■□□□ 1.5
DDX56Q9NY93 RHOBTB3-206ENST00000506817 1432 ntTSL 2 BASIC24.4■■□□□ 1.5
DDX56Q9NY93 RRAD-201ENST00000299759 1569 ntAPPRIS P1 TSL 1 (best) BASIC24.4■■□□□ 1.5
DDX56Q9NY93 RAB20-201ENST00000267328 1518 ntAPPRIS P1 TSL 1 (best) BASIC24.4■■□□□ 1.5
DDX56Q9NY93 QKI-207ENST00000453779 5685 ntTSL 1 (best) BASIC24.39■■□□□ 1.5
DDX56Q9NY93 HSPBP1-201ENST00000255631 1768 ntAPPRIS P1 TSL 1 (best) BASIC24.39■■□□□ 1.5
DDX56Q9NY93 PFN2-210ENST00000481767 1620 ntTSL 2 BASIC24.39■■□□□ 1.5
DDX56Q9NY93 SLC9A3-AS1-207ENST00000607286 1357 ntTSL 5 BASIC24.39■■□□□ 1.49
DDX56Q9NY93 BSPRY-201ENST00000374183 2339 ntAPPRIS P1 TSL 1 (best) BASIC24.39■■□□□ 1.49
DDX56Q9NY93 CDH23-206ENST00000398842 1759 ntTSL 5 BASIC24.39■■□□□ 1.49
DDX56Q9NY93 KLF15-201ENST00000296233 2574 ntAPPRIS P1 TSL 1 (best) BASIC24.39■■□□□ 1.49
DDX56Q9NY93 LTBP3-212ENST00000529189 1997 ntTSL 2 BASIC24.38■■□□□ 1.49
DDX56Q9NY93 R3HDM4-201ENST00000361574 1815 ntAPPRIS P1 TSL 1 (best) BASIC24.38■■□□□ 1.49
DDX56Q9NY93 SSTR4-201ENST00000255008 1427 ntAPPRIS P1 BASIC24.38■■□□□ 1.49
DDX56Q9NY93 SPCS2P3-201ENST00000500401 656 ntBASIC24.38■■□□□ 1.49
DDX56Q9NY93 HSD17B1P1-201ENST00000590052 955 ntBASIC24.38■■□□□ 1.49
DDX56Q9NY93 RBM42-205ENST00000589871 1487 ntTSL 5 BASIC24.38■■□□□ 1.49
DDX56Q9NY93 TMEM202-AS1-202ENST00000565181 2325 ntBASIC24.38■■□□□ 1.49
DDX56Q9NY93 ST3GAL5-269ENST00000640992 2292 ntAPPRIS ALT2 TSL 5 BASIC24.37■■□□□ 1.49
DDX56Q9NY93 SLC52A2-202ENST00000402965 1777 ntAPPRIS P1 TSL 2 BASIC24.37■■□□□ 1.49
DDX56Q9NY93 FAM136A-202ENST00000430566 885 ntTSL 3 BASIC24.37■■□□□ 1.49
DDX56Q9NY93 CAPN10-207ENST00000391984 2644 ntAPPRIS P2 TSL 1 (best) BASIC24.37■■□□□ 1.49
DDX56Q9NY93 RFNG-201ENST00000310496 1828 ntAPPRIS P1 TSL 2 BASIC24.37■■□□□ 1.49
DDX56Q9NY93 DUSP22-201ENST00000344450 1485 ntTSL 1 (best) BASIC24.37■■□□□ 1.49
DDX56Q9NY93 PGF-203ENST00000553716 1699 ntAPPRIS ALT2 TSL 1 (best) BASIC24.37■■□□□ 1.49
DDX56Q9NY93 TMEM191C-206ENST00000432134 1129 ntAPPRIS ALT2 TSL 5 BASIC24.36■■□□□ 1.49
DDX56Q9NY93 RAX2-202ENST00000555978 2145 ntAPPRIS P1 TSL 1 (best) BASIC24.36■■□□□ 1.49
DDX56Q9NY93 MYO10-205ENST00000507288 1677 ntTSL 1 (best) BASIC24.36■■□□□ 1.49
DDX56Q9NY93 NKAIN3-202ENST00000523211 1988 ntAPPRIS P1 TSL 2 BASIC24.35■■□□□ 1.49
DDX56Q9NY93 HLA-L-211ENST00000482052 1765 ntBASIC24.35■■□□□ 1.49
DDX56Q9NY93 LRRC24-201ENST00000529415 1758 ntAPPRIS P2 TSL 1 (best) BASIC24.35■■□□□ 1.49
DDX56Q9NY93 IDNK-203ENST00000405990 629 ntTSL 2 BASIC24.35■■□□□ 1.49
DDX56Q9NY93 PXMP2-205ENST00000543589 632 ntTSL 3 BASIC24.35■■□□□ 1.49
DDX56Q9NY93 MIR6765-201ENST00000614092 87 ntBASIC24.35■■□□□ 1.49
DDX56Q9NY93 GNAS-AS1_1.1-201ENST00000621898 103 ntBASIC24.35■■□□□ 1.49
DDX56Q9NY93 DVL1-201ENST00000378888 3239 ntAPPRIS ALT1 TSL 5 BASIC24.35■■□□□ 1.49
DDX56Q9NY93 JMJD8-201ENST00000412368 2038 ntAPPRIS P2 TSL 1 (best) BASIC24.35■■□□□ 1.49
DDX56Q9NY93 KLC3-202ENST00000470402 1820 ntTSL 1 (best) BASIC24.35■■□□□ 1.49
DDX56Q9NY93 CBARP-202ENST00000382477 2453 ntAPPRIS ALT2 TSL 5 BASIC24.35■■□□□ 1.49
DDX56Q9NY93 GNPTG-201ENST00000204679 1983 ntAPPRIS P1 TSL 1 (best) BASIC24.34■■□□□ 1.49
DDX56Q9NY93 HNRNPD-203ENST00000353341 1585 ntAPPRIS ALT1 TSL 1 (best) BASIC24.34■■□□□ 1.49
DDX56Q9NY93 YPEL1-202ENST00000403503 466 ntTSL 3 BASIC24.34■■□□□ 1.49
DDX56Q9NY93 EML2-209ENST00000587152 2763 ntAPPRIS ALT2 TSL 2 BASIC24.34■■□□□ 1.49
DDX56Q9NY93 CTF1-201ENST00000279804 1664 ntAPPRIS P3 TSL 1 (best) BASIC24.34■■□□□ 1.49
DDX56Q9NY93 CYP4V2-201ENST00000378802 2042 ntAPPRIS P1 TSL 1 (best) BASIC24.34■■□□□ 1.49
DDX56Q9NY93 DLK2-202ENST00000372485 1572 ntAPPRIS ALT1 TSL 5 BASIC24.33■■□□□ 1.49
DDX56Q9NY93 AGTR1-203ENST00000404754 2252 ntAPPRIS P1 TSL 1 (best) BASIC24.33■■□□□ 1.49
DDX56Q9NY93 NKX2-3-201ENST00000344586 2097 ntAPPRIS P1 TSL 2 BASIC24.33■■□□□ 1.49
DDX56Q9NY93 ARL4D-201ENST00000320033 1612 ntAPPRIS P1 TSL 1 (best) BASIC24.33■■□□□ 1.49
DDX56Q9NY93 AC087393.1-201ENST00000582896 145 ntBASIC24.33■■□□□ 1.49
DDX56Q9NY93 ZNF503-AS2-201ENST00000425916 2026 ntTSL 1 (best) BASIC24.33■■□□□ 1.49
DDX56Q9NY93 HSD11B2-201ENST00000326152 1900 ntAPPRIS P1 TSL 1 (best) BASIC24.33■■□□□ 1.49
DDX56Q9NY93 TMEM256-PLSCR3-204ENST00000573331 2557 ntAPPRIS P5 TSL 2 BASIC24.33■■□□□ 1.48
DDX56Q9NY93 P4HA3-201ENST00000331597 2274 ntAPPRIS P1 TSL 1 (best) BASIC24.32■■□□□ 1.48
DDX56Q9NY93 FAM57A-202ENST00000308278 2412 ntAPPRIS P1 TSL 1 (best) BASIC24.32■■□□□ 1.48
DDX56Q9NY93 BCKDHB-202ENST00000356489 1514 ntAPPRIS P1 TSL 1 (best) BASIC24.32■■□□□ 1.48
DDX56Q9NY93 C20orf24-201ENST00000342422 896 ntTSL 2 BASIC24.32■■□□□ 1.48
DDX56Q9NY93 C20orf24-202ENST00000344795 1114 ntAPPRIS P1 TSL 1 (best) BASIC24.32■■□□□ 1.48
DDX56Q9NY93 DUX4L9-201ENST00000449051 1259 ntBASIC24.32■■□□□ 1.48
DDX56Q9NY93 FGF22-202ENST00000586042 1288 ntTSL 1 (best) BASIC24.32■■□□□ 1.48
DDX56Q9NY93 TCEA1-211ENST00000522635 1432 ntTSL 2 BASIC24.32■■□□□ 1.48
DDX56Q9NY93 GPR160-201ENST00000355897 2039 ntAPPRIS P1 TSL 1 (best) BASIC24.32■■□□□ 1.48
DDX56Q9NY93 PTRH1-205ENST00000423807 1570 ntTSL 2 BASIC24.31■■□□□ 1.48
DDX56Q9NY93 FAM222B-205ENST00000577682 549 ntTSL 4 BASIC24.31■■□□□ 1.48
DDX56Q9NY93 LINC01233-202ENST00000598832 568 ntTSL 2 BASIC24.31■■□□□ 1.48
DDX56Q9NY93 TMEM44-202ENST00000347147 2245 ntAPPRIS P1 TSL 1 (best) BASIC24.31■■□□□ 1.48
DDX56Q9NY93 PDSS1-201ENST00000376215 1626 ntAPPRIS P1 TSL 1 (best) BASIC24.31■■□□□ 1.48
DDX56Q9NY93 TMEM260-202ENST00000538838 1638 ntTSL 1 (best) BASIC24.31■■□□□ 1.48
DDX56Q9NY93 GALNT12-201ENST00000375011 2735 ntAPPRIS P1 TSL 1 (best) BASIC24.31■■□□□ 1.48
DDX56Q9NY93 KRT72-203ENST00000537672 1813 ntAPPRIS P1 TSL 2 BASIC24.31■■□□□ 1.48
DDX56Q9NY93 RAB40B-201ENST00000269347 2189 ntTSL 2 BASIC24.3■■□□□ 1.48
DDX56Q9NY93 ZDHHC1-201ENST00000348579 2047 ntAPPRIS P2 TSL 1 (best) BASIC24.3■■□□□ 1.48
DDX56Q9NY93 SLC35B2-204ENST00000537814 1715 ntTSL 2 BASIC24.3■■□□□ 1.48
Retrieved 100 of 98,524 protein–RNA pairs in 18.2 ms