Protein–RNA interactions for Protein: Q8TB33

LINC01560, Putative uncharacterized protein encoded by LINC01560, humanhuman

Predictions only

Length 94 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LINC01560Q8TB33 FAM228B-208ENST00000613899 1238 ntAPPRIS ALT2 TSL 1 (best) BASIC20.5■□□□□ 0.87
LINC01560Q8TB33 FHL2-203ENST00000358129 1578 ntTSL 5 BASIC20.5■□□□□ 0.87
LINC01560Q8TB33 RNF166-201ENST00000312838 1883 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
LINC01560Q8TB33 DACT2-202ENST00000366796 2028 ntAPPRIS ALT2 TSL 1 (best) BASIC20.49■□□□□ 0.87
LINC01560Q8TB33 DPY19L1-209ENST00000638088 5075 ntAPPRIS ALT2 TSL 5 BASIC20.49■□□□□ 0.87
LINC01560Q8TB33 AC004540.2-202ENST00000451264 508 ntTSL 2 BASIC20.49■□□□□ 0.87
LINC01560Q8TB33 RAB40C-201ENST00000248139 2699 ntAPPRIS P1 TSL 1 (best) BASIC20.48■□□□□ 0.87
LINC01560Q8TB33 EMC9-201ENST00000216799 835 ntAPPRIS P1 TSL 1 (best) BASIC20.48■□□□□ 0.87
LINC01560Q8TB33 AC092807.3-205ENST00000467666 531 ntTSL 3 BASIC20.48■□□□□ 0.87
LINC01560Q8TB33 RNF225-201ENST00000601382 990 ntAPPRIS P1 BASIC20.48■□□□□ 0.87
LINC01560Q8TB33 KLC3-201ENST00000391946 1780 ntAPPRIS P2 TSL 1 (best) BASIC20.48■□□□□ 0.87
LINC01560Q8TB33 ARL4D-201ENST00000320033 1612 ntAPPRIS P1 TSL 1 (best) BASIC20.48■□□□□ 0.87
LINC01560Q8TB33 SPOCK3-221ENST00000512648 1456 ntTSL 1 (best) BASIC20.48■□□□□ 0.87
LINC01560Q8TB33 TMEM9-201ENST00000367330 1959 ntAPPRIS P3 TSL 1 (best) BASIC20.48■□□□□ 0.87
LINC01560Q8TB33 BTBD6-204ENST00000463376 2195 ntAPPRIS ALT2 TSL 2 BASIC20.48■□□□□ 0.87
LINC01560Q8TB33 RRAD-201ENST00000299759 1569 ntAPPRIS P1 TSL 1 (best) BASIC20.47■□□□□ 0.87
LINC01560Q8TB33 NKX2-8-201ENST00000258829 1261 ntAPPRIS P1 TSL 1 (best) BASIC20.47■□□□□ 0.87
LINC01560Q8TB33 TMEM80-201ENST00000397510 1094 ntAPPRIS P2 TSL 5 BASIC20.47■□□□□ 0.87
LINC01560Q8TB33 PCGF3-202ENST00000400151 1175 ntTSL 2 BASIC20.47■□□□□ 0.87
LINC01560Q8TB33 MIR4466-201ENST00000606121 54 ntBASIC20.47■□□□□ 0.87
LINC01560Q8TB33 PPP1CC-206ENST00000550991 1882 ntTSL 2 BASIC20.47■□□□□ 0.87
LINC01560Q8TB33 CCR10-201ENST00000332438 1773 ntAPPRIS P1 TSL 1 (best) BASIC20.46■□□□□ 0.87
LINC01560Q8TB33 NR6A1-201ENST00000344523 1846 ntAPPRIS ALT2 TSL 5 BASIC20.46■□□□□ 0.87
LINC01560Q8TB33 ZNF775-201ENST00000329630 2257 ntAPPRIS P1 TSL 1 (best) BASIC20.46■□□□□ 0.87
LINC01560Q8TB33 SPAG16-201ENST00000272898 1059 ntTSL 5 BASIC20.46■□□□□ 0.87
LINC01560Q8TB33 SENCR-201ENST00000526269 1298 ntTSL 1 (best) BASIC20.46■□□□□ 0.87
LINC01560Q8TB33 LY6H-205ENST00000615409 980 ntAPPRIS P3 TSL 1 (best) BASIC20.46■□□□□ 0.87
LINC01560Q8TB33 TMEM260-202ENST00000538838 1638 ntTSL 1 (best) BASIC20.45■□□□□ 0.87
LINC01560Q8TB33 CD72-202ENST00000378430 585 ntTSL 3 BASIC20.45■□□□□ 0.86
LINC01560Q8TB33 MCRIP1-202ENST00000457257 942 ntTSL 3 BASIC20.45■□□□□ 0.86
LINC01560Q8TB33 IFNL4-201ENST00000606380 1637 ntAPPRIS P5 TSL 1 (best) BASIC20.45■□□□□ 0.86
LINC01560Q8TB33 TST-202ENST00000403892 1797 ntAPPRIS P1 TSL 1 (best) BASIC20.44■□□□□ 0.86
LINC01560Q8TB33 DNMT3A-206ENST00000406659 1775 ntTSL 1 (best) BASIC20.44■□□□□ 0.86
LINC01560Q8TB33 AC096631.2-201ENST00000436136 790 ntBASIC20.44■□□□□ 0.86
LINC01560Q8TB33 AC079305.3-201ENST00000455416 218 ntTSL 5 BASIC20.44■□□□□ 0.86
LINC01560Q8TB33 CDKN2A-208ENST00000498124 880 ntTSL 1 (best) BASIC20.44■□□□□ 0.86
LINC01560Q8TB33 FEZ1-205ENST00000524435 750 ntTSL 2 BASIC20.44■□□□□ 0.86
LINC01560Q8TB33 AC110285.6-201ENST00000617652 491 ntBASIC20.44■□□□□ 0.86
LINC01560Q8TB33 PHF23-212ENST00000576955 1944 ntTSL 2 BASIC20.44■□□□□ 0.86
LINC01560Q8TB33 C1QTNF1-206ENST00000579760 1672 ntAPPRIS P1 TSL 1 (best) BASIC20.44■□□□□ 0.86
LINC01560Q8TB33 ERN1-208ENST00000606895 2068 ntBASIC20.44■□□□□ 0.86
LINC01560Q8TB33 TTBK2-205ENST00000567274 1777 ntTSL 5 BASIC20.44■□□□□ 0.86
LINC01560Q8TB33 HES4-201ENST00000304952 899 ntAPPRIS P1 TSL 1 (best) BASIC20.43■□□□□ 0.86
LINC01560Q8TB33 PYCARD-202ENST00000350605 696 ntTSL 1 (best) BASIC20.43■□□□□ 0.86
LINC01560Q8TB33 ERRFI1-204ENST00000474874 479 ntTSL 3 BASIC20.43■□□□□ 0.86
LINC01560Q8TB33 AC119427.1-201ENST00000633182 556 ntTSL 4 BASIC20.43■□□□□ 0.86
LINC01560Q8TB33 AKAP8L-208ENST00000595465 1933 ntTSL 2 BASIC20.43■□□□□ 0.86
LINC01560Q8TB33 PEX26-202ENST00000399744 1672 ntAPPRIS P1 TSL 1 (best) BASIC20.42■□□□□ 0.86
LINC01560Q8TB33 RNF19B-201ENST00000235150 2334 ntAPPRIS ALT2 TSL 1 (best) BASIC20.42■□□□□ 0.86
LINC01560Q8TB33 QDPR-206ENST00000508623 601 ntTSL 3 BASIC20.42■□□□□ 0.86
LINC01560Q8TB33 RASSF5-204ENST00000580449 1932 ntTSL 1 (best) BASIC20.42■□□□□ 0.86
LINC01560Q8TB33 CDH24-206ENST00000610348 2037 ntTSL 1 (best) BASIC20.42■□□□□ 0.86
LINC01560Q8TB33 GSK3A-201ENST00000222330 2188 ntAPPRIS P2 TSL 1 (best) BASIC20.42■□□□□ 0.86
LINC01560Q8TB33 EEF1D-203ENST00000419152 1452 ntAPPRIS ALT2 TSL 5 BASIC20.42■□□□□ 0.86
LINC01560Q8TB33 ZNF784-202ENST00000591479 1559 ntTSL 1 (best) BASIC20.42■□□□□ 0.86
LINC01560Q8TB33 DHFR-203ENST00000505337 1719 ntAPPRIS P1 TSL 2 BASIC20.41■□□□□ 0.86
LINC01560Q8TB33 AC090877.2-201ENST00000558441 1738 ntBASIC20.41■□□□□ 0.86
LINC01560Q8TB33 PKM-203ENST00000389093 2279 ntTSL 5 BASIC20.41■□□□□ 0.86
LINC01560Q8TB33 CHTF8-208ENST00000522091 863 ntTSL 2 BASIC20.41■□□□□ 0.86
LINC01560Q8TB33 TOLLIP-208ENST00000527938 549 ntTSL 4 BASIC20.41■□□□□ 0.86
LINC01560Q8TB33 AP003068.2-202ENST00000526623 1662 ntTSL 2 BASIC20.41■□□□□ 0.86
LINC01560Q8TB33 RTN2-208ENST00000590526 2357 ntTSL 5 BASIC20.41■□□□□ 0.86
LINC01560Q8TB33 LURAP1L-201ENST00000319264 1753 ntAPPRIS P1 TSL 1 (best) BASIC20.4■□□□□ 0.86
LINC01560Q8TB33 TRIM7-202ENST00000334421 1228 ntTSL 1 (best) BASIC20.4■□□□□ 0.86
LINC01560Q8TB33 DAZAP1-202ENST00000336761 2290 ntTSL 5 BASIC20.4■□□□□ 0.86
LINC01560Q8TB33 DNAJC21-201ENST00000342382 2309 ntAPPRIS P1 TSL 1 (best) BASIC20.4■□□□□ 0.86
LINC01560Q8TB33 CARM1-202ENST00000344150 2722 ntAPPRIS ALT2 TSL 5 BASIC20.4■□□□□ 0.86
LINC01560Q8TB33 SURF2-201ENST00000371964 842 ntAPPRIS P1 TSL 1 (best) BASIC20.4■□□□□ 0.86
LINC01560Q8TB33 PHF11-202ENST00000378319 1359 ntAPPRIS P3 TSL 1 (best) BASIC20.4■□□□□ 0.86
LINC01560Q8TB33 GABRA5-203ENST00000400081 2761 ntAPPRIS P1 TSL 5 BASIC20.4■□□□□ 0.86
LINC01560Q8TB33 PPP1R14A-205ENST00000591585 949 ntTSL 2 BASIC20.4■□□□□ 0.86
LINC01560Q8TB33 AL512631.2-201ENST00000604634 923 ntBASIC20.4■□□□□ 0.86
LINC01560Q8TB33 DUSP22-214ENST00000605315 867 ntTSL 5 BASIC20.4■□□□□ 0.86
LINC01560Q8TB33 TAZ-216ENST00000613002 1485 ntTSL 1 (best) BASIC20.4■□□□□ 0.86
LINC01560Q8TB33 RCOR3-202ENST00000367006 2525 ntTSL 1 (best) BASIC20.4■□□□□ 0.86
LINC01560Q8TB33 EVA1C-201ENST00000300255 1998 ntAPPRIS P3 TSL 1 (best) BASIC20.39■□□□□ 0.86
LINC01560Q8TB33 AC096887.2-201ENST00000623443 1957 ntBASIC20.39■□□□□ 0.86
LINC01560Q8TB33 GNB2-203ENST00000393926 1641 ntAPPRIS P1 TSL 5 BASIC20.39■□□□□ 0.86
LINC01560Q8TB33 TFPT-201ENST00000391757 774 ntTSL 5 BASIC20.39■□□□□ 0.85
LINC01560Q8TB33 TFPT-202ENST00000391758 804 ntAPPRIS ALT2 TSL 1 (best) BASIC20.39■□□□□ 0.85
LINC01560Q8TB33 AC097639.1-201ENST00000565519 1891 ntBASIC20.39■□□□□ 0.85
LINC01560Q8TB33 RUNDC3A-201ENST00000225441 1821 ntTSL 1 (best) BASIC20.39■□□□□ 0.85
LINC01560Q8TB33 CRACR2B-202ENST00000525077 1578 ntAPPRIS P1 TSL 1 (best) BASIC20.38■□□□□ 0.85
LINC01560Q8TB33 IHH-201ENST00000295731 2023 ntAPPRIS P1 TSL 1 (best) BASIC20.38■□□□□ 0.85
LINC01560Q8TB33 POLR2F-211ENST00000488684 564 ntTSL 2 BASIC20.38■□□□□ 0.85
LINC01560Q8TB33 ZNRF1-205ENST00000566250 1069 ntTSL 1 (best) BASIC20.38■□□□□ 0.85
LINC01560Q8TB33 ZNRF1-206ENST00000567962 1234 ntAPPRIS P1 TSL 1 (best) BASIC20.38■□□□□ 0.85
LINC01560Q8TB33 RASSF1-AS1-201ENST00000629828 790 ntBASIC20.38■□□□□ 0.85
LINC01560Q8TB33 CEND1-201ENST00000330106 1649 ntAPPRIS P1 TSL 1 (best) BASIC20.38■□□□□ 0.85
LINC01560Q8TB33 RAPGEF1-203ENST00000372195 6256 ntTSL 1 (best) BASIC20.37■□□□□ 0.85
LINC01560Q8TB33 HAND2-201ENST00000359562 2780 ntAPPRIS P1 TSL 1 (best) BASIC20.37■□□□□ 0.85
LINC01560Q8TB33 KDELR3-202ENST00000409006 931 ntTSL 1 (best) BASIC20.37■□□□□ 0.85
LINC01560Q8TB33 AC005837.3-201ENST00000612163 286 ntBASIC20.37■□□□□ 0.85
LINC01560Q8TB33 KAT5-208ENST00000530446 1697 ntTSL 1 (best) BASIC20.37■□□□□ 0.85
LINC01560Q8TB33 FAAH-201ENST00000243167 2094 ntAPPRIS P1 TSL 1 (best) BASIC20.37■□□□□ 0.85
LINC01560Q8TB33 ZDHHC16-204ENST00000370842 1877 ntAPPRIS ALT1 TSL 5 BASIC20.37■□□□□ 0.85
LINC01560Q8TB33 P2RX4-203ENST00000359949 1836 ntTSL 5 BASIC20.37■□□□□ 0.85
LINC01560Q8TB33 LCNL1-201ENST00000408973 1839 ntAPPRIS P1 TSL 2 BASIC20.37■□□□□ 0.85
LINC01560Q8TB33 NKPD1-202ENST00000589776 1950 ntAPPRIS P1 BASIC20.36■□□□□ 0.85
LINC01560Q8TB33 SNX5-217ENST00000606557 1087 ntBASIC20.36■□□□□ 0.85
Retrieved 100 of 98,524 protein–RNA pairs in 15.4 ms